Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00167 ATGGTGGCCATTTCCCTTTACAGAGGGAACCTCCACAGGGTCCCCGATGTGCCTCGTCGCTGGCTTATGCCGATCCACAACATTTCTATTAGAGACTTCAAATCCCTTCTGCACCGTCGTTCAAAAGCCCTCTCTCGCCTCTTCGCCACCGCCTCTTCTTCTCCGGCTAAAGTTTCTACTTCCCCTAACTCTAATCCTATTTCGAATTCTTTAATCAAACCAGACGTTGAAGGACCTAGAAATAATGCGTCTGCTCCTGAGGTGCCATTGGAAACTGAAAGGGTTGGTGTTGGTGATGAAAGACCTTCTGCGCATGTTAAGAAGAGGAAGAAGTCGGACATTGGCGATGATTGTTTGGGGAAATCGACTGAGGGGTTTGATTCTGTGAATGGAACAAAACCTTGTTTTATTGATCAAGGTTCTGATCCAGTGGAAAATGGTGGCGCGCATTCTAACGAGGAAAATCATGCTGTATTAGAAAACCCTAACAAAGAGGCAAATGAGGATTTGTTAGATGTCGAGGAGAACAGGAAAAAGGAAGTTGAAGAGAAGCTAAAAGTTTTGAATGAGACAACACATAATCTTGTGCAAGTGTTAAAACAGATCTTCCATGTGGAAGAGGAAGTAAAAAGGCGTAGGAGTTTGCAAGGGACAGAAATTCGCGCTTCTGCTCCTCCTCTTCAAGTGGATGCCTCAGCCGATACGGGGTCGATGACCAGACCGCTTGCTCCTAGGGTAGCCACAGAAGTGAATGCTAATGGAGATACTGAAGGTGGAGAAGCTGATGATCTTTTGAACCAGAATGTTCCTTCAGAGTCTCCTCTTAGAAGGCCTGCCCACATACAACCTAATATGGGCTTGCATCCATCCCGAACAAATTTTAGCCTTACTGGAAGCCCGTCGTGTTTACCTCCGGCTGGGCAATCTGGGCTTCCTCCAAACCTGCCCACACTATCTGTATCTGGGACCAACTACATTGCATTCTCACATTCTCCTGCAGCATCTGGGGGCACTTCAGTTCTCAGAGATGCTCGGCAGCCTAGCCCATGGAATTAG 1056 47.06 MVAISLYRGNLHRVPDVPRRWLMPIHNISIRDFKSLLHRRSKALSRLFATASSSPAKVSTSPNSNPISNSLIKPDVEGPRNNASAPEVPLETERVGVGDERPSAHVKKRKKSDIGDDCLGKSTEGFDSVNGTKPCFIDQGSDPVENGGAHSNEENHAVLENPNKEANEDLLDVEENRKKEVEEKLKVLNETTHNLVQVLKQIFHVEEEVKRRRSLQGTEIRASAPPLQVDASADTGSMTRPLAPRVATEVNANGDTEGGEADDLLNQNVPSESPLRRPAHIQPNMGLHPSRTNFSLTGSPSCLPPAGQSGLPPNLPTLSVSGTNYIAFSHSPAASGGTSVLRDARQPSPWN 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 759949 762594 - CmaCh10G001670.1 Cma10g00167 301483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00167 351 MobiDBLite consensus disorder prediction 50 71 - -
Cma10g00167 351 Coils Coil 163 191 - -
Cma10g00167 351 MobiDBLite consensus disorder prediction 286 304 - -
Cma10g00167 351 MobiDBLite consensus disorder prediction 50 109 - -
Cma10g00167 351 MobiDBLite consensus disorder prediction 252 310 - -
Cma10g00167 351 MobiDBLite consensus disorder prediction 330 351 - -
Cma10g00167 351 PANTHER TRNA (ILE)-LYSIDINE SYNTHASE 1 351 - -
Cma10g00167 351 MobiDBLite consensus disorder prediction 93 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00167 - - K09422 cpep:111780276 552.362
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00167 Cma11g00172 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00167 Cma-Chr10:759949 Cma11g00172 Cma-Chr11:900140 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g474 . . Bda06g00564 . . . . Bma12g01017 . . Cma10g00167 Cma11g00172 Car10g00156 Car11g00128 Sed08g0187 . Cpe04g01524 Bhi02g00372 Tan09g2177 Cmetu02g1628 . Hepe09g0152 . . Cla06g01621 Cam06g1800 Cec06g1850 Cco06g1857 Clacu06g1760 Cmu06g1704 Cre06g2522 Cone2ag0874 Cone16ag0136 . . . . . . . Blo15g00290 . . Bpe07g00806 . . . . Cmo10g00179 Cmo11g00136 . . . . . . . . . . . . . . . . . . . . Lsi06g01501 Csa01g00198 Chy02g02533 Cme02g01917
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007145 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00167 Cma_Chr10 FPKM 7.179181 5.780001 5.680459 5.498822 8.766754 9.423497 10.644046 7.174687 6.675353 6.127798