Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00171 ATGGAAGCTTCGGGGTTTATGGCCAGTAAATGGATTGCAACGGCGTTTGCGATTTGGATCCAATGCAGCTGCGGTGCTGCCACCTTCAGCATCTACTCGTCGGCTCTCAAGTCCTCACAGGGCTACGACCAATCCACCCTTGGCACCGTTTCCGTTTTCAAGGACATCGGCACCAACGCCGGCATCATTTCTGGCTTTCTTTGCTCCGCCGTCACTTCCCCCATCCCCCGCCGACCCTTCGTTGGGCCATGGATGGTGTACGCGGCGGGAGCGATTCAGTGCTTCCTCGGATATATTTTTATGTGGGCCGCTGTCTCCGGACTGATCGATCGGCCGTCGGTTCCAGTGATGTGCTTCTTCATGTTGCTGGCTTCACATGCGCAAACGTTTTTCAGTACGGCGAATGTGGTAACTGGCGTGCACAATTTCAAGCACTATAGCGGCACGATTGTGGGCATCATGAAGGTACCAACTCAAACCCTTAGTTCTAAATCCTTCTTACCCTTATCAATTGACAGAACAGAGTCCAGAAACGAGAGGAAGCATTTGAACTCATTGTCTGCACATGCCGTGATAGTTGCTTTTTACCTAATGGCTGTCATCATTTTGGACAACACTTTCTCCCTTTCATCATCGACTCGTTCCTTCACATTCTCCATACTCCTAATTCTTCTTTCTGCTCCTCTTGGAATCGCCATTAATGCTCGGAGGGAGGACTTAAAAAGGACTGAAAAACCCCATGTTCTTAACAAATCTAAGTCAGTGGACACAGAGGATCTTGTTGAGTATCACGAGTTGCCCAGGGACGAGCGCCAGATAATGGCTGTTGCAAGCTCTAGCACCCCTCAAGCCATGAATGTCTTGGATGCTTTATGCACTATAAACTTCTGGCTGTTGTTTACAGCCATGGTGTGCGGAATGGGTTCTGGATTGGCCACAATAAACAACATGACACAGCTTGGCCAGTCTCTTGGCTACACAGTAACAGAGACGAAGACATTTGTTTCCTTATGGAGTATATGGAACTTTCTGGGACGTTTTGGAGCTGGTTACGCCTCTGATTATCTTCTCCACTCATACGGCTATGCCAGGCCATTGTTAATGGCAATCACTCTACTCATAATGAGCGGTGGGCACCTAGTGATCGCCTCAAGTTTCTCTGGAAATCTTTACGTGGGTTCAACTCTTGTTGGCATATGCTACGGCTCACAGTGGTCGCTCATGCCCTCAGTTACTTCGGACATATTTGGGTTAGAGCATATGGGAACTATTTTCAACGCCATAGCCACAGCCAGCCCTTTGGGGTCGTACGTTTTTTCTGTTAAAGTGATCGGTTACATCTACGACAGGGAAGGTGCCGGAGAAGATGGGTCCTGCTCTGGCACACACTGTTTTGCGGTGTCTTTTCTAGTCATGGCCGTCGTGGCTTTCGTGGGATTTCTGTCTTCCGTTGCTGGGGTCTTCCTTCGGCCGCCGGGTCTCGCTATGTGCCTTTTCACGTTGGTGGCTGCTCATGCTCAGAGCTTTTCAACACGGCTAACGTTGTCACTGGCGTTCGGAATTTCCCGAGTTATAGTGGGAAGTCTTTCCCAAACTCATAACAAAATGCATTCGAGGAGGAATATTACGAAGGAGGTTAAAAATTTTCTTTGGCTTCTCTTCCTTGAGAAAAAACTGAATACGAATGAGAGGGTGCAAAGGTTGTTAAGAGATTTAGCATCACCTAGAGCACCCCATTATTGGCAAGAGTTGTTATGGACAAAGCTTGTTAGGTCACTACCTCAAAAGAAGAGCAAGAATTCTTTGAAACTGGGAAGAATTCGGATAGACATAGTAGAGTTTTCTAAGATGTCCACAAGGGGTGGGGATTCTGAGGAGGGATCCAGCCCTGGCATCCGTCCAAGCGAGAGGACTCCTGCTTTGAAAGCAAAATCAAATTTGTCTCTGCCAATGTCTGCAGCGCCCGTCAGTCCTACAACATATGCTGTCGAGAAGCAAGAACCAGCCAAAATGGATGACTCTTACATGGCTTCGTGGAGGACATGA 2046 48.19 MEASGFMASKWIATAFAIWIQCSCGAATFSIYSSALKSSQGYDQSTLGTVSVFKDIGTNAGIISGFLCSAVTSPIPRRPFVGPWMVYAAGAIQCFLGYIFMWAAVSGLIDRPSVPVMCFFMLLASHAQTFFSTANVVTGVHNFKHYSGTIVGIMKVPTQTLSSKSFLPLSIDRTESRNERKHLNSLSAHAVIVAFYLMAVIILDNTFSLSSSTRSFTFSILLILLSAPLGIAINARREDLKRTEKPHVLNKSKSVDTEDLVEYHELPRDERQIMAVASSSTPQAMNVLDALCTINFWLLFTAMVCGMGSGLATINNMTQLGQSLGYTVTETKTFVSLWSIWNFLGRFGAGYASDYLLHSYGYARPLLMAITLLIMSGGHLVIASSFSGNLYVGSTLVGICYGSQWSLMPSVTSDIFGLEHMGTIFNAIATASPLGSYVFSVKVIGYIYDREGAGEDGSCSGTHCFAVSFLVMAVVAFVGFLSSVAGVFLRPPGLAMCLFTLVAAHAQSFSTRLTLSLAFGISRVIVGSLSQTHNKMHSRRNITKEVKNFLWLLFLEKKLNTNERVQRLLRDLASPRAPHYWQELLWTKLVRSLPQKKSKNSLKLGRIRIDIVEFSKMSTRGGDSEEGSSPGIRPSERTPALKAKSNLSLPMSAAPVSPTTYAVEKQEPAKMDDSYMASWRT 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 771181 776545 - CmaCh10G001710.1 Cma10g00171 301487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00171 681 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 7 155 - -
Cma10g00171 681 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 172 485 - -
Cma10g00171 681 Gene3D MFS general substrate transporter like domains 183 484 IPR036259 -
Cma10g00171 681 SUPERFAMILY MFS general substrate transporter 277 484 IPR036259 -
Cma10g00171 681 Pfam Nodulin-like 10 155 IPR010658 -
Cma10g00171 681 Pfam Nodulin-like 171 232 IPR010658 -
Cma10g00171 681 PANTHER F25A4.25 PROTEIN 172 485 - -
Cma10g00171 681 PANTHER F25A4.25 PROTEIN 7 155 - -
Cma10g00171 681 MobiDBLite consensus disorder prediction 618 681 - -
Cma10g00171 681 Pfam Major Facilitator Superfamily 298 490 IPR011701 GO:0022857|GO:0055085
Cma10g00171 681 CDD MFS_Mch1p_like 9 479 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00171 Cma11g00168 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00171 Cma-Chr10:771181 Cma11g00169 Cma-Chr11:882867 1.33E-160 dispersed
Cma10g00171 Cma-Chr10:771181 Cma11g00168 Cma-Chr11:880213 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00171 - - csv:101216789 721.85