Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00172 ATGGACGGCGCCACCGCCGCCTCTCTTGATCGCTCCTCCCACGCAAATCAATATCATGAAACGCCGGAAACGCCGGAGGATTTCTACTCCGATTCCGGACTCTCACATGTTCCGCTGGCCCAGGCTCCGGTTCTAGTGCTTATTAAATTCCACACAGCGCTGCGATCAGAGCTTGCGGATTTACGGCGCGTGACATTGGCCGCGGCGGAGAGTGGCTGTTATGGCTGCGAGTTCGTGTCGGAATTGATTCGGAGAGTTGAGTTTCTGAAACTTGCTTATAAGTATCATTGCGCCGCCGAGGATGAGCATGAAAGCTTAGATGGCCTCTTCACCTCCATTTCTGAACACTGTGAAGAAATCAATGCAGAAAACAAAGATATCTCCAAGCCATTTCAGGAACTGGTTTTCTGTTTGGGCACAATTCAAACCACCATTTGCCAGCATATGATCAAAGAAGAACAACAGGTTTTTCCATTGCTGATGAAACAGTTCTCTGCAAGAGAACAGGCGTCACTTGTGTGGCAATTCATTTGCAGTGTGCCGATGATACTATTGGAGGAGCTTCTGCCATGGATGATGTCTTTTCTTCCATCGGAGCAACAATCAGAAGTCGTAATCTGCCTAAGAGATGTAGTGCCGAACGAGAAACTTCTGCAAGAGGTGATAATGTCTTGGCTTGGCAACAGTGAGGCGCCTTGTAGAGATGTAGAAGCAGAAGGTATGAAGGTGCATTCATCTCAGGACAGTGGACAGAGCCCCGTCGATAGCCTCCACATCTGGCATGGTGCCATTATGAAGGATCTGAAGGAAGTTCTAAAATGTCTGTTCCAACTCAAGAGCTGCACTTCAACAGCTCTTTCTAATCTTGATTCCTTGGTTGTCCAAATAAGGTTCCTGGCTGATGTAATTCTTTTTTATCGAAAGGCAATGGAGAAATTCTTTCGTCCAGTGTTCAATCAATATTCGGACGCATACCTAATCTCCTCCGACCAGGCATTTCTTAGTGATAGTCATATTGAAGCCTTACAACGGTTGCTGCAGCACGGTGCCCAAGACACTATACCTTTGAGCAACTTTTTGGAAAAATTGTGCTGGGACATGGAGTCGTTTGTTGTCCGAGTTAGCAAACAGTTCACGTTTCAAGAAACGAAGGTGCTTCCAGTGATTAGAAGGAGCTGCAGCCATAAAACACAGCAACAGCTTCTGTATATGAGCCTCCGCACCTTGCCACTTGGGCTCTTGAAGTGTATTGTTAGTTGGTTTTCAACTCACTTATCTGAGGAAGAAATGAGATCTGTACTTCACACCAAATCGAAGGGAGATCTTCGGGTCAACAATGCGCTTGTTGCCCTCTTACATGAGTGGTTACGAATTGGCTACTCGGGCAAAACTTCGGTCGAACAATTTGGACAAGAATTGCAGAAAATTTTTCAAACCAGAAGCTATTTGTTGCATGGACAGGTGGAACAAACGAAGGGAGTTGTTGGAACTTTATCCTTGAGCTCAAATGTTCAATCTTATAAGGGCTCAAACTCTGAGGAAATTGGATTACTTTCCAACAACAAGAACAAGGGTTTCATGTCACATTCTTCGCCTGATGGTTCTTGCACTGCTTCAGTGTATGGAACATCTTATTCTAGTGGAATCAATCTGCAGATACATTTTCCAGGAACAGTGAAGGTGCCATGTCCTTACACTAAGCATCTTTATGAGGAACGCCCACATTCTGCTTTTAATCAGCCAAAACCAATAGACCTCATTTTCTTCTTCCACAAAGCTCTCAAGAAAGAATTGGATTACTTTGTTCTCGGTTCGGCTAAGATGGTTGAAAATGTTGGGATCTTGACAGAGTTTATCAGGCGGTTCCAATTGGTAAAATATTTATACCAAATCCATACGGATGCTGAGGACCAGATTGCTTTTCCAGCATTGGAGAAGAAGGGAAAGTTCCAAAATATTAGCTACTCCTACTCCATTGATCATAAACTTGAAGTACACCAATTCAGTACAATATCCCTCATTCTTAATGAAATGTCTGAATTGCACGCTTCGATTTTTTATGGCAATACTGATAGGAAAATGTTTGGTCACCGGCAGCTCTGCCTGGAACTCCATGATATGTGCAAATCTCTGCACAAGTCGCTCTCTGACCACGTTGATCGTGAAGAAATTGAGCTTTGGCCCTTGTTCAGAGAATTCTTCTCAATCGAAGAGCAAGAAAAGCTTATTGGAGCAATATTTGGCAGAACAAAAGCTGAAATATTGCAAGATATGATACCTTGGCAAATGGCATATTTAACACCTTCTGATCAACATGACATGATGTCTATGTTCCACAAGGTAACAAGGAATACAATGTTCAATGAATGGTTAAGAGAGTGGTGGGAAGGTTATGACCATGAGAGGGTGACAGCTGAGGTGACGACTACTACTCCCTCACTGACTTCAGATCCCTTGGAAATCATCTCAAAATATCTTTCCACGGAAGTAACTGATGAATGTGAAGGAAATGTTTTTGGAAAACCCATCACCTCAGAACAGAATGAAGGTCAATGGCATGCAACCGATGTCGAGAAGACGGTAATATTCAACTTGAATGATGAAACAAAAGATTTTGATGGCAGCCAACGTAACAGAACATTTGAAGAATGCACAAAACTTGTTTCTCATGGGGATGTTGATAGGGATGCTGATGTTATAACAGAACATATGATCGATACAGAACGACCTGAAGAACATGAGAAATCAATCCAACATGACCACCTTCTTACAATTAGTCAAGAAGATCTGGAAGCAGCAATAAGAAGGGTCTCGAGAGACTCATCCTTAGACCCCAAAACTAAATCCTATATGATACAGAATTTGCTAATGAGCCGTTGGAATGCCAAGCACCATACCCAATTAGAGACAAACGTTACAACGGAAAGCCAAGGATTTGCAGGTCAGTATCCATCCTATAAGGATTCTTTGAAGAAAGAATTTGGTTGCAAACATTACAAAAGAAACTGCAAGCTTCTAGCTCCATGTTGCAACCAACTACACACATGCATACATTGTCATGATGAGACAACCGATCACTCGTTGGATAGAAAATCCATCACAAAGATGATGTGCATGAACTGCTTGGTAGTTCAGCCTATTGGCAAGACATGTTCAACTGTCTCTTGTGGCAATTTGTCAATGGGAAAATATTTCTGCAAGATCTGCAAACTATTTGACGATTCTAGAGATATCTACCATTGTCCATACTGCAACCTGTGCCGAGTGGGAAAGGGATTGGGGATTGACTACTTCCATTGCATGAACTGCAATGCCTGCATGTCCCGTGCACTCTCAGTTCATGTATGCAGAGAGAAGTGCCTTGAAGACAACTGCCCTATTTGCCACGAATACATCTTCACTTCCACCCTTCCAGTCAAGTCCCTCCCATGTGGCCATTTGATGCATTCAGCATGTTTTCAGGAATACACCTACACACATTATACCTGTCCTATCTGTAGCAAGTCACTGGGAGACATGCAGGTGTACTTTGAGATGCTGGATGCATTGTTGGCTGAAGAGAAAATTCCAGATGAGTATTCTGGGAAAACTCAGGTCATACTGTGCAATGACTGTGAGAAGCGTGGAATAGCAGCATTCCACTGGTTGTACCATAAATGTCCCTTCTGCGGTTCATATAATACCAGGGTATTGTAA 3696 43.13 MDGATAASLDRSSHANQYHETPETPEDFYSDSGLSHVPLAQAPVLVLIKFHTALRSELADLRRVTLAAAESGCYGCEFVSELIRRVEFLKLAYKYHCAAEDEHESLDGLFTSISEHCEEINAENKDISKPFQELVFCLGTIQTTICQHMIKEEQQVFPLLMKQFSAREQASLVWQFICSVPMILLEELLPWMMSFLPSEQQSEVVICLRDVVPNEKLLQEVIMSWLGNSEAPCRDVEAEGMKVHSSQDSGQSPVDSLHIWHGAIMKDLKEVLKCLFQLKSCTSTALSNLDSLVVQIRFLADVILFYRKAMEKFFRPVFNQYSDAYLISSDQAFLSDSHIEALQRLLQHGAQDTIPLSNFLEKLCWDMESFVVRVSKQFTFQETKVLPVIRRSCSHKTQQQLLYMSLRTLPLGLLKCIVSWFSTHLSEEEMRSVLHTKSKGDLRVNNALVALLHEWLRIGYSGKTSVEQFGQELQKIFQTRSYLLHGQVEQTKGVVGTLSLSSNVQSYKGSNSEEIGLLSNNKNKGFMSHSSPDGSCTASVYGTSYSSGINLQIHFPGTVKVPCPYTKHLYEERPHSAFNQPKPIDLIFFFHKALKKELDYFVLGSAKMVENVGILTEFIRRFQLVKYLYQIHTDAEDQIAFPALEKKGKFQNISYSYSIDHKLEVHQFSTISLILNEMSELHASIFYGNTDRKMFGHRQLCLELHDMCKSLHKSLSDHVDREEIELWPLFREFFSIEEQEKLIGAIFGRTKAEILQDMIPWQMAYLTPSDQHDMMSMFHKVTRNTMFNEWLREWWEGYDHERVTAEVTTTTPSLTSDPLEIISKYLSTEVTDECEGNVFGKPITSEQNEGQWHATDVEKTVIFNLNDETKDFDGSQRNRTFEECTKLVSHGDVDRDADVITEHMIDTERPEEHEKSIQHDHLLTISQEDLEAAIRRVSRDSSLDPKTKSYMIQNLLMSRWNAKHHTQLETNVTTESQGFAGQYPSYKDSLKKEFGCKHYKRNCKLLAPCCNQLHTCIHCHDETTDHSLDRKSITKMMCMNCLVVQPIGKTCSTVSCGNLSMGKYFCKICKLFDDSRDIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRALSVHVCREKCLEDNCPICHEYIFTSTLPVKSLPCGHLMHSACFQEYTYTHYTCPICSKSLGDMQVYFEMLDALLAEEKIPDEYSGKTQVILCNDCEKRGIAAFHWLYHKCPFCGSYNTRVL 1231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 779481 785782 + CmaCh10G001720.1 Cma10g00172 301488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00172 1231 MobiDBLite consensus disorder prediction 1 30 - -
Cma10g00172 1231 CDD RING-H2_Pirh2 1124 1167 - -
Cma10g00172 1231 SUPERFAMILY Zinc hairpin stack 1062 1116 IPR037275 -
Cma10g00172 1231 Pfam Zinc-ribbon 1172 1229 IPR039512 -
Cma10g00172 1231 Gene3D nmb1532 protein domain like 101 178 - -
Cma10g00172 1231 Gene3D nmb1532 protein domain like 578 749 - -
Cma10g00172 1231 SUPERFAMILY CHY zinc finger-like 987 1052 IPR037274 GO:0008270
Cma10g00172 1231 ProSiteProfiles Zinc finger CTCHY-type profile. 1061 1124 IPR017921 -
Cma10g00172 1231 Pfam Ring finger domain 1123 1166 IPR001841 -
Cma10g00172 1231 Gene3D - 1196 1231 - -
Cma10g00172 1231 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 239 1231 - -
Cma10g00172 1231 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 34 230 - -
Cma10g00172 1231 CDD Hr-like 46 158 - -
Cma10g00172 1231 ProSiteProfiles Zinc finger CHY-type profile. 989 1058 IPR008913 GO:0008270
Cma10g00172 1231 ProSiteProfiles Zinc finger RING-type profile. 1125 1167 IPR001841 -
Cma10g00172 1231 SMART ring_2 1125 1166 IPR001841 -
Cma10g00172 1231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1118 1169 IPR013083 -
Cma10g00172 1231 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 239 1231 - -
Cma10g00172 1231 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 34 230 - -
Cma10g00172 1231 SUPERFAMILY RING/U-box 1113 1171 - -
Cma10g00172 1231 CDD Hr-like 585 728 - -
Cma10g00172 1231 Pfam CHY zinc finger 996 1071 IPR008913 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00172 K16276 K16276, BTS; zinc finger protein-like protein - csv:101212459 2125.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01497 Cma-Chr4:7606180 Cma10g00172 Cma-Chr10:779481 4.14E-07 dispersed
Cma10g00172 Cma-Chr10:779481 Cma10g00305 Cma-Chr10:1377743 2.21E-11 dispersed
Cma10g00172 Cma-Chr10:779481 Cma11g00284 Cma-Chr11:1408956 4.56E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g484 . . . . . . . . . . Cma10g00172 . Car10g00161 . . . . . . . . . . . Cla06g01615 Cam06g1794 Cec06g1843 Cco06g1849 Clacu06g1753 Cmu06g1697 Cre06g2514 . . . . . . . . . Blo15g00295 . . . . . . . Cmo10g00185 . . . . . . Cpe18g00697 . . . . . . . . . . . . . . Lsi06g01496 Csa01g00206 Chy02g02353 Cme02g01912
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00172 Cma_Chr10 FPKM 43.385494 47.482548 0.0 0.0 1.069383 1.319384 0.902765 0.035785 0.0 0.0