Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00173 ATGGGGCGCAAGAAGAAAAACATTGATCCGCGTTCTAAACAATCTCCGTCGGTTCGTGGAGTCGCCGTTGATGCTCCGAGTTTACCAAACGCCGCCGACAAGAGTTCAATACCTGATAAGGCAAGTAGTAACAACCAAAGTAGGATCGAGTCGGTGTCTGTCAATGAATCGGATGGCTTCTCTTATTCCACAATTAAACTCGAATGCGAGCGGGCTCTTAACGTGCTTCGGCGCGGGAACCACTCTAAGGCACTCAGGCTTATGAAGGAGTTGAACTCCAAGATTAATAACTCTGTTCACTCTGCATTGATTCATCGGGTTCAAGGTACTATTTGTGTCAAACTAGCATCGGTTATTGAGGACGTGAATACGAAGCAGCGGCATTTGAAGAATGCGATTGAGTCTGCTCGTAAAGCAGTCGAGCTCTCACCAAACTCGATTGAGTTTTCCCATTTTTATGCAAATTTGCTTTACGAGGGTGCAAATGATGCTAGGGAGTACGAGGAGGTGGTGCAAGAGTGTGAGCGGGCCCTTGGCATTGAAAATCCAATCGATCCCGCTAAAGAAAGCTTGCAGGATGAAAAGGATCAGAAAATACCTACTCCAGAAGCGCGAATTACACACGTTCAGACTGAATTGAGGCATTTAGTTCAAAAATCAAACATATACTCGATATCATCTTGGATGAAGAACTTGGGTAATGGGGAGGAGAAATTTAGGTTGATTCCGATTAGAAAAGTGACCGAGGACCCAATGGAGGCAACGTTGGTTCAGGCTAAGAGGGCAAATGAAATCAAGAAGGCAACGAAAACGCCTGAGGAGCGAAGGAAGGAGATTGAAGTCCGTGTTGCTGCTGCAAGGCTGTTGCAACAGAAGTTTGAGTCGCCTCAAATGCAAAACGAAGGAGGTAAAGCTGATCGGACCCTGGATTCATCTTCAGGGTCTAGTACAAAAGTTGGTGAGCGGCGAAAACACGCCAATGTGCGGAAACATGGCTCTTCACGTGAAAGTAGGGATTGGGTTTATTCTTTTTGGAATTCCAAGAGTACAGAATCAAAGAAAGAGTTGCTTAAGATCAAGATAAGTGATCTTAAGACTCATTTTAGTTCTTCAAAGGATACCTTGGCAAATGAAGTTATTTCAGAAGCTGTGTCCTTTTATGATGCCAATAAAACATGGAATTTTTTGGTGTGTTGCAAATGTGATGAGAAATTTGTGTATCCGGAATCCCATATGCATCATGTGCTTCAAGAGCACATGGGTAACCTTTTGCCGAAAATGCAATCTATCATGCCACAGAATGTTGACAATGATTGGAGTCAAATGCTTCTTAATTGCTCTTGGAAACCATTTGATGTTTCAGCTGCAGCTAAAATACTCATAGGTCAAACAAAATGCAATGACTCGGAGTTGGTTAAGGATATCGGCTTACAGCATCACTCAGAATGTGAAGAGTCTCTCAAAGATGCATGTGATTCATCTCCAGAGAAGCATAATCATGGGCATGGTTTAAATGAATTCAAGCTTTATGAAAAAATTAGCAACAGCGGATTTGCATTATCTGATAGTTTTCCAGTATCTGATGACTCTGAGCGAACTAGGCTTCTTGAAAAAATTCATGCGGTATTTGAGTTACTCATTGGACATAAATGCCTTGCTGCAAGCCATCTAAACAAGGTGATACAATTTGCAATGGATGAGTTACAGGGCATTGTTTCTGGATCTCATTTTCTAAAGCGGGGTCTGGACCAAACACCTCTATGCATTTGCTTTCTGGGCGCTTCTCAGCTTGGAAAAATCCTCAAGTTCTTGCAAGAATTATCTCAGTCTTGTGGTATTGGTAGATACTCTGATAAAAGTACTGGTCAAGTTGAAGATCCAGAGAGTGATAAACAAGCTGTTGATGTCAAAGAGAAAGTTGTTCTCAATGGAGATGCGTCACTTCTCCTCCTAAACGAGTGTTTTCTGTCGTCTGATATCCCTCATGCCAATGATCAGGTTGCAGCCACAGATCATATGCCTGCTGCAACTGTTAAAGATGCTACTGCAAATGAGGTTCTTTCTGATGTCGATTCTTTCCTATCTTGGATATATGCAGATCCCTCTAATGGGGAACAGGTAGCATCATGGACAAAAACAAAGGAAGAAAAGACAAAACAACAATTGGAAATTTTTCAAATGCTTGAGAAGGAATTTTACCTTCTGCAGAACCTTTGTGAGAGAAAATGTGAGCATTTGAACTATGAGGAAGCGTTGCAGTCAGTAGAGGATCTATTCTTTGAGGAGAGCAAGAAGGAGGAAGCTACGGCTGAATTTATCCCCAAGAGTTATGTGTCAGTCCTGAGGAAGCGAAGAGAGGAGCTTCTTGAGACTGAGAATAATGTGATGTATATCGGCAGTAGGTTTGAGTTAGATGTTGTAACTAATATTTTGAAAGAAGCTGAAGCTCTGAAGGTTAATCAATTTGGATATGAGGAAACTGTTGCCAATGTGCCTTCTCAGTCATGTGATCTGGAATCTGGTGAAGATGAAAATTGGAGGGCTAAGGGTTATTTGCATCAAGTTGATACTTGTATAGAAATTGCAATAAAGAGACAGAAAGAACAATTATCTATTGAGGTTAGCAAAATCGATGCACGTATCATGCGGAATGTTTCTGGAATGCAACAGATGGAACTTAAGCTCGAGCCTGTTTCAGCACATGATTATCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCATATTTAGAAGATTTGGCTGAAAAAGATGCTACGAAGAAGTCTGATGCTGCAAGAGAGGCATTTTTAGCTGAACTGGCACTGGATTCAGAAAAAGGTATCAAAGGAGGAAGTGATAATTCGAGACATGCACATGAAAAGCCAAAGGAAAAGAAAAGGAGCAAGGAGTTTAGGAAATCCAAGGACTCTAAGGTGGTCAGTGGTCCTGAGCAGAATGTGCTTCATGATGGGGCTGTCGATGGAGTTCCCGTTCAAGTTTCACCTGATGGTGATGTGGCAAAGGTAGACGTTGCTGCTTTTGAGAACTCTGATGCTTTAAGACTACAGGAGGAAGGGCTTAGACGCAAAATTGAGCTGGAAGCAGATGAAAGAAGGTTAGAAGAGGCTCTGGAGTATCAAAGACGGGTTGAGAATGAGGCTAAACAAAAGCTTCTGGCTGAACTACAAAAGAAATCTGCCCAGACAAATCTAGAGGACAAAGTTGCTCTGGCAGAACATGATAATCCCATTGAACTCGTCCCCAGTGTTGAGGGTGCTGAAGAGCATTTTAAACCCACTGTTGTGGATCAATTGGCAGAAAGTGAATCGATTCCCGGCTTGTCTAGGAATTTTCCTGCAATGCCAAATGCTGTTTCAGGTTCATACAATGCAGGAATTGTAGAGAATACCCCACCGCCTTCTGATAGGAAGAAGGGGAGGAAAGGTAGACGACACAAGGTTGCAATCAAACGAGTTGATGGAAATCAGCCTTCACAATCTTATAATGATAATGTAGCCTTTGACAACCAATTGAATGAGCAAGTCAGAGATCATGACAATCTCGTAGTAGATAGTGTTAATCCACTCTCTGAAGAAAATGGCACAAAGACTTTGGGACAACAACATGCGGAGGATGATGAGGAAAGATTTCAAGCTGACCTTAAGAAGGCTGTACGCCAGAGCCTTGATGCATTTCAAGAACAGCAGGAATTGCCCTTGATTACAAGTTCCAGTACACCATCGATCAGCTGTGGTGAAGTAGATGGTAATGATCTTCCATCAAATGAACTCAACGTAGAGAATGTGCAGGAAGAAGATGTATTTGGTACAGGACTTAAAAATGAAGTTGGTGAATATAATTGCTTTCTGAATGTGATTATTCAGTCCTTATGGCATTTAAGACGGTTTCGAGAAGAGTTCCTGAGAAGATCTACGACTGAACATGTTCATGTTGGGGATCCTTGTGTTCTTTGTGCATTATATGAAATCCTTGCTGCCTTGAGCACGGCATCTGCAGATGCTAGAAGAGAAGCAGTCGCCCCCACTTCTTTGAGAATAGCTCTGAGCAATTTTTGTCCTGATAGTAATTTCTTCCAAGAGGGCCAGATGAATGATGCCTCTGAAGTGCTAGCAGTCATTTTTGATTGCCTACACAAGTCGTTGACTCGTAGTTCGAGTGTTTCTGATACAGAATCAGTGGAAAGCAATTGCATGGGGTCGTGGGACTGTGCAAGTGACACTTGTTTGGTTCATTCCATCTTTGGTATGGACATTTTTGAACGAATGAATTGCTATAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCCCATGCCCTTCGAACAATGAAGGTTATGTGTACAGAAAGCTCCTTTGATGAACTTCTGAATGTTGTTGAAATGAATCATCAGCTAGCTTGTGATTTGGATGTTGGTGGCTGCGGAAAGCTCAATTACATTCATCGATTTCTCTCTGCAGCACCACACGTGTTCACAACAGTCTTGGGTTGGCAGAACACTTGTGAGAGTGCTGATGACATCACAGCGACATTAGCTGCTCTGAATACTGAAGTAGATATCAGTGTTCTTTATCGGGGTCTAGATCCAAATATTACCCATAATTTAGTATCAGTGGTTTGCTATTATGGTCAACACTATCATTGTTTTGCCTACAGTCACGACAAGAAATGCTGGATAATGTACGATGATAAAACTGTTAAGGTAATTGGCGGCTGGCCTGATGTTCTTACCATGTGCGAAAAAGGACACTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4839 41.99 MGRKKKNIDPRSKQSPSVRGVAVDAPSLPNAADKSSIPDKASSNNQSRIESVSVNESDGFSYSTIKLECERALNVLRRGNHSKALRLMKELNSKINNSVHSALIHRVQGTICVKLASVIEDVNTKQRHLKNAIESARKAVELSPNSIEFSHFYANLLYEGANDAREYEEVVQECERALGIENPIDPAKESLQDEKDQKIPTPEARITHVQTELRHLVQKSNIYSISSWMKNLGNGEEKFRLIPIRKVTEDPMEATLVQAKRANEIKKATKTPEERRKEIEVRVAAARLLQQKFESPQMQNEGGKADRTLDSSSGSSTKVGERRKHANVRKHGSSRESRDWVYSFWNSKSTESKKELLKIKISDLKTHFSSSKDTLANEVISEAVSFYDANKTWNFLVCCKCDEKFVYPESHMHHVLQEHMGNLLPKMQSIMPQNVDNDWSQMLLNCSWKPFDVSAAAKILIGQTKCNDSELVKDIGLQHHSECEESLKDACDSSPEKHNHGHGLNEFKLYEKISNSGFALSDSFPVSDDSERTRLLEKIHAVFELLIGHKCLAASHLNKVIQFAMDELQGIVSGSHFLKRGLDQTPLCICFLGASQLGKILKFLQELSQSCGIGRYSDKSTGQVEDPESDKQAVDVKEKVVLNGDASLLLLNECFLSSDIPHANDQVAATDHMPAATVKDATANEVLSDVDSFLSWIYADPSNGEQVASWTKTKEEKTKQQLEIFQMLEKEFYLLQNLCERKCEHLNYEEALQSVEDLFFEESKKEEATAEFIPKSYVSVLRKRREELLETENNVMYIGSRFELDVVTNILKEAEALKVNQFGYEETVANVPSQSCDLESGEDENWRAKGYLHQVDTCIEIAIKRQKEQLSIEVSKIDARIMRNVSGMQQMELKLEPVSAHDYQSILLPLVNSYLRAYLEDLAEKDATKKSDAAREAFLAELALDSEKGIKGGSDNSRHAHEKPKEKKRSKEFRKSKDSKVVSGPEQNVLHDGAVDGVPVQVSPDGDVAKVDVAAFENSDALRLQEEGLRRKIELEADERRLEEALEYQRRVENEAKQKLLAELQKKSAQTNLEDKVALAEHDNPIELVPSVEGAEEHFKPTVVDQLAESESIPGLSRNFPAMPNAVSGSYNAGIVENTPPPSDRKKGRKGRRHKVAIKRVDGNQPSQSYNDNVAFDNQLNEQVRDHDNLVVDSVNPLSEENGTKTLGQQHAEDDEERFQADLKKAVRQSLDAFQEQQELPLITSSSTPSISCGEVDGNDLPSNELNVENVQEEDVFGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLRRSTTEHVHVGDPCVLCALYEILAALSTASADARREAVAPTSLRIALSNFCPDSNFFQEGQMNDASEVLAVIFDCLHKSLTRSSSVSDTESVESNCMGSWDCASDTCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINAHALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHRFLSAAPHVFTTVLGWQNTCESADDITATLAALNTEVDISVLYRGLDPNITHNLVSVVCYYGQHYHCFAYSHDKKCWIMYDDKTVKVIGGWPDVLTMCEKGHLQPQVLFFEAVN 1612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 785799 794228 - CmaCh10G001730.1 Cma10g00173 301489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00173 1612 CDD Peptidase_C19 1371 1609 - -
Cma10g00173 1612 Pfam Protein of unknown function (DUF629) 342 861 IPR006865 -
Cma10g00173 1612 MobiDBLite consensus disorder prediction 949 992 - -
Cma10g00173 1612 MobiDBLite consensus disorder prediction 292 332 - -
Cma10g00173 1612 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1612 - -
Cma10g00173 1612 Gene3D Tetratricopeptide repeat domain 62 189 IPR011990 GO:0005515
Cma10g00173 1612 Coils Coil 119 139 - -
Cma10g00173 1612 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1612 - -
Cma10g00173 1612 MobiDBLite consensus disorder prediction 1131 1154 - -
Cma10g00173 1612 SUPERFAMILY Cysteine proteinases 1279 1609 IPR038765 -
Cma10g00173 1612 ProSitePatterns Zinc finger C2H2 type domain signature. 398 419 IPR013087 -
Cma10g00173 1612 Pfam Protein of unknown function (DUF627) 71 181 IPR006866 -
Cma10g00173 1612 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1279 1611 IPR028889 -
Cma10g00173 1612 MobiDBLite consensus disorder prediction 292 316 - -
Cma10g00173 1612 MobiDBLite consensus disorder prediction 1 53 - -
Cma10g00173 1612 MobiDBLite consensus disorder prediction 36 53 - -
Cma10g00173 1612 Gene3D Cysteine proteinases 1265 1612 - -
Cma10g00173 1612 Pfam Ubiquitin carboxyl-terminal hydrolase 1280 1587 IPR001394 GO:0004843|GO:0016579
Cma10g00173 1612 MobiDBLite consensus disorder prediction 951 981 - -
Cma10g00173 1612 Coils Coil 1035 1074 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00173 Cma11g00167 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00173 Cma-Chr10:785799 Cma12g00861 Cma-Chr12:6386568 3.62E-07 dispersed
Cma10g00173 Cma-Chr10:785799 Cma11g00167 Cma-Chr11:870841 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00173 - - mcha:111007268 2551.93