Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00173 | ATGGGGCGCAAGAAGAAAAACATTGATCCGCGTTCTAAACAATCTCCGTCGGTTCGTGGAGTCGCCGTTGATGCTCCGAGTTTACCAAACGCCGCCGACAAGAGTTCAATACCTGATAAGGCAAGTAGTAACAACCAAAGTAGGATCGAGTCGGTGTCTGTCAATGAATCGGATGGCTTCTCTTATTCCACAATTAAACTCGAATGCGAGCGGGCTCTTAACGTGCTTCGGCGCGGGAACCACTCTAAGGCACTCAGGCTTATGAAGGAGTTGAACTCCAAGATTAATAACTCTGTTCACTCTGCATTGATTCATCGGGTTCAAGGTACTATTTGTGTCAAACTAGCATCGGTTATTGAGGACGTGAATACGAAGCAGCGGCATTTGAAGAATGCGATTGAGTCTGCTCGTAAAGCAGTCGAGCTCTCACCAAACTCGATTGAGTTTTCCCATTTTTATGCAAATTTGCTTTACGAGGGTGCAAATGATGCTAGGGAGTACGAGGAGGTGGTGCAAGAGTGTGAGCGGGCCCTTGGCATTGAAAATCCAATCGATCCCGCTAAAGAAAGCTTGCAGGATGAAAAGGATCAGAAAATACCTACTCCAGAAGCGCGAATTACACACGTTCAGACTGAATTGAGGCATTTAGTTCAAAAATCAAACATATACTCGATATCATCTTGGATGAAGAACTTGGGTAATGGGGAGGAGAAATTTAGGTTGATTCCGATTAGAAAAGTGACCGAGGACCCAATGGAGGCAACGTTGGTTCAGGCTAAGAGGGCAAATGAAATCAAGAAGGCAACGAAAACGCCTGAGGAGCGAAGGAAGGAGATTGAAGTCCGTGTTGCTGCTGCAAGGCTGTTGCAACAGAAGTTTGAGTCGCCTCAAATGCAAAACGAAGGAGGTAAAGCTGATCGGACCCTGGATTCATCTTCAGGGTCTAGTACAAAAGTTGGTGAGCGGCGAAAACACGCCAATGTGCGGAAACATGGCTCTTCACGTGAAAGTAGGGATTGGGTTTATTCTTTTTGGAATTCCAAGAGTACAGAATCAAAGAAAGAGTTGCTTAAGATCAAGATAAGTGATCTTAAGACTCATTTTAGTTCTTCAAAGGATACCTTGGCAAATGAAGTTATTTCAGAAGCTGTGTCCTTTTATGATGCCAATAAAACATGGAATTTTTTGGTGTGTTGCAAATGTGATGAGAAATTTGTGTATCCGGAATCCCATATGCATCATGTGCTTCAAGAGCACATGGGTAACCTTTTGCCGAAAATGCAATCTATCATGCCACAGAATGTTGACAATGATTGGAGTCAAATGCTTCTTAATTGCTCTTGGAAACCATTTGATGTTTCAGCTGCAGCTAAAATACTCATAGGTCAAACAAAATGCAATGACTCGGAGTTGGTTAAGGATATCGGCTTACAGCATCACTCAGAATGTGAAGAGTCTCTCAAAGATGCATGTGATTCATCTCCAGAGAAGCATAATCATGGGCATGGTTTAAATGAATTCAAGCTTTATGAAAAAATTAGCAACAGCGGATTTGCATTATCTGATAGTTTTCCAGTATCTGATGACTCTGAGCGAACTAGGCTTCTTGAAAAAATTCATGCGGTATTTGAGTTACTCATTGGACATAAATGCCTTGCTGCAAGCCATCTAAACAAGGTGATACAATTTGCAATGGATGAGTTACAGGGCATTGTTTCTGGATCTCATTTTCTAAAGCGGGGTCTGGACCAAACACCTCTATGCATTTGCTTTCTGGGCGCTTCTCAGCTTGGAAAAATCCTCAAGTTCTTGCAAGAATTATCTCAGTCTTGTGGTATTGGTAGATACTCTGATAAAAGTACTGGTCAAGTTGAAGATCCAGAGAGTGATAAACAAGCTGTTGATGTCAAAGAGAAAGTTGTTCTCAATGGAGATGCGTCACTTCTCCTCCTAAACGAGTGTTTTCTGTCGTCTGATATCCCTCATGCCAATGATCAGGTTGCAGCCACAGATCATATGCCTGCTGCAACTGTTAAAGATGCTACTGCAAATGAGGTTCTTTCTGATGTCGATTCTTTCCTATCTTGGATATATGCAGATCCCTCTAATGGGGAACAGGTAGCATCATGGACAAAAACAAAGGAAGAAAAGACAAAACAACAATTGGAAATTTTTCAAATGCTTGAGAAGGAATTTTACCTTCTGCAGAACCTTTGTGAGAGAAAATGTGAGCATTTGAACTATGAGGAAGCGTTGCAGTCAGTAGAGGATCTATTCTTTGAGGAGAGCAAGAAGGAGGAAGCTACGGCTGAATTTATCCCCAAGAGTTATGTGTCAGTCCTGAGGAAGCGAAGAGAGGAGCTTCTTGAGACTGAGAATAATGTGATGTATATCGGCAGTAGGTTTGAGTTAGATGTTGTAACTAATATTTTGAAAGAAGCTGAAGCTCTGAAGGTTAATCAATTTGGATATGAGGAAACTGTTGCCAATGTGCCTTCTCAGTCATGTGATCTGGAATCTGGTGAAGATGAAAATTGGAGGGCTAAGGGTTATTTGCATCAAGTTGATACTTGTATAGAAATTGCAATAAAGAGACAGAAAGAACAATTATCTATTGAGGTTAGCAAAATCGATGCACGTATCATGCGGAATGTTTCTGGAATGCAACAGATGGAACTTAAGCTCGAGCCTGTTTCAGCACATGATTATCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCATATTTAGAAGATTTGGCTGAAAAAGATGCTACGAAGAAGTCTGATGCTGCAAGAGAGGCATTTTTAGCTGAACTGGCACTGGATTCAGAAAAAGGTATCAAAGGAGGAAGTGATAATTCGAGACATGCACATGAAAAGCCAAAGGAAAAGAAAAGGAGCAAGGAGTTTAGGAAATCCAAGGACTCTAAGGTGGTCAGTGGTCCTGAGCAGAATGTGCTTCATGATGGGGCTGTCGATGGAGTTCCCGTTCAAGTTTCACCTGATGGTGATGTGGCAAAGGTAGACGTTGCTGCTTTTGAGAACTCTGATGCTTTAAGACTACAGGAGGAAGGGCTTAGACGCAAAATTGAGCTGGAAGCAGATGAAAGAAGGTTAGAAGAGGCTCTGGAGTATCAAAGACGGGTTGAGAATGAGGCTAAACAAAAGCTTCTGGCTGAACTACAAAAGAAATCTGCCCAGACAAATCTAGAGGACAAAGTTGCTCTGGCAGAACATGATAATCCCATTGAACTCGTCCCCAGTGTTGAGGGTGCTGAAGAGCATTTTAAACCCACTGTTGTGGATCAATTGGCAGAAAGTGAATCGATTCCCGGCTTGTCTAGGAATTTTCCTGCAATGCCAAATGCTGTTTCAGGTTCATACAATGCAGGAATTGTAGAGAATACCCCACCGCCTTCTGATAGGAAGAAGGGGAGGAAAGGTAGACGACACAAGGTTGCAATCAAACGAGTTGATGGAAATCAGCCTTCACAATCTTATAATGATAATGTAGCCTTTGACAACCAATTGAATGAGCAAGTCAGAGATCATGACAATCTCGTAGTAGATAGTGTTAATCCACTCTCTGAAGAAAATGGCACAAAGACTTTGGGACAACAACATGCGGAGGATGATGAGGAAAGATTTCAAGCTGACCTTAAGAAGGCTGTACGCCAGAGCCTTGATGCATTTCAAGAACAGCAGGAATTGCCCTTGATTACAAGTTCCAGTACACCATCGATCAGCTGTGGTGAAGTAGATGGTAATGATCTTCCATCAAATGAACTCAACGTAGAGAATGTGCAGGAAGAAGATGTATTTGGTACAGGACTTAAAAATGAAGTTGGTGAATATAATTGCTTTCTGAATGTGATTATTCAGTCCTTATGGCATTTAAGACGGTTTCGAGAAGAGTTCCTGAGAAGATCTACGACTGAACATGTTCATGTTGGGGATCCTTGTGTTCTTTGTGCATTATATGAAATCCTTGCTGCCTTGAGCACGGCATCTGCAGATGCTAGAAGAGAAGCAGTCGCCCCCACTTCTTTGAGAATAGCTCTGAGCAATTTTTGTCCTGATAGTAATTTCTTCCAAGAGGGCCAGATGAATGATGCCTCTGAAGTGCTAGCAGTCATTTTTGATTGCCTACACAAGTCGTTGACTCGTAGTTCGAGTGTTTCTGATACAGAATCAGTGGAAAGCAATTGCATGGGGTCGTGGGACTGTGCAAGTGACACTTGTTTGGTTCATTCCATCTTTGGTATGGACATTTTTGAACGAATGAATTGCTATAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCCCATGCCCTTCGAACAATGAAGGTTATGTGTACAGAAAGCTCCTTTGATGAACTTCTGAATGTTGTTGAAATGAATCATCAGCTAGCTTGTGATTTGGATGTTGGTGGCTGCGGAAAGCTCAATTACATTCATCGATTTCTCTCTGCAGCACCACACGTGTTCACAACAGTCTTGGGTTGGCAGAACACTTGTGAGAGTGCTGATGACATCACAGCGACATTAGCTGCTCTGAATACTGAAGTAGATATCAGTGTTCTTTATCGGGGTCTAGATCCAAATATTACCCATAATTTAGTATCAGTGGTTTGCTATTATGGTCAACACTATCATTGTTTTGCCTACAGTCACGACAAGAAATGCTGGATAATGTACGATGATAAAACTGTTAAGGTAATTGGCGGCTGGCCTGATGTTCTTACCATGTGCGAAAAAGGACACTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG | 4839 | 41.99 | MGRKKKNIDPRSKQSPSVRGVAVDAPSLPNAADKSSIPDKASSNNQSRIESVSVNESDGFSYSTIKLECERALNVLRRGNHSKALRLMKELNSKINNSVHSALIHRVQGTICVKLASVIEDVNTKQRHLKNAIESARKAVELSPNSIEFSHFYANLLYEGANDAREYEEVVQECERALGIENPIDPAKESLQDEKDQKIPTPEARITHVQTELRHLVQKSNIYSISSWMKNLGNGEEKFRLIPIRKVTEDPMEATLVQAKRANEIKKATKTPEERRKEIEVRVAAARLLQQKFESPQMQNEGGKADRTLDSSSGSSTKVGERRKHANVRKHGSSRESRDWVYSFWNSKSTESKKELLKIKISDLKTHFSSSKDTLANEVISEAVSFYDANKTWNFLVCCKCDEKFVYPESHMHHVLQEHMGNLLPKMQSIMPQNVDNDWSQMLLNCSWKPFDVSAAAKILIGQTKCNDSELVKDIGLQHHSECEESLKDACDSSPEKHNHGHGLNEFKLYEKISNSGFALSDSFPVSDDSERTRLLEKIHAVFELLIGHKCLAASHLNKVIQFAMDELQGIVSGSHFLKRGLDQTPLCICFLGASQLGKILKFLQELSQSCGIGRYSDKSTGQVEDPESDKQAVDVKEKVVLNGDASLLLLNECFLSSDIPHANDQVAATDHMPAATVKDATANEVLSDVDSFLSWIYADPSNGEQVASWTKTKEEKTKQQLEIFQMLEKEFYLLQNLCERKCEHLNYEEALQSVEDLFFEESKKEEATAEFIPKSYVSVLRKRREELLETENNVMYIGSRFELDVVTNILKEAEALKVNQFGYEETVANVPSQSCDLESGEDENWRAKGYLHQVDTCIEIAIKRQKEQLSIEVSKIDARIMRNVSGMQQMELKLEPVSAHDYQSILLPLVNSYLRAYLEDLAEKDATKKSDAAREAFLAELALDSEKGIKGGSDNSRHAHEKPKEKKRSKEFRKSKDSKVVSGPEQNVLHDGAVDGVPVQVSPDGDVAKVDVAAFENSDALRLQEEGLRRKIELEADERRLEEALEYQRRVENEAKQKLLAELQKKSAQTNLEDKVALAEHDNPIELVPSVEGAEEHFKPTVVDQLAESESIPGLSRNFPAMPNAVSGSYNAGIVENTPPPSDRKKGRKGRRHKVAIKRVDGNQPSQSYNDNVAFDNQLNEQVRDHDNLVVDSVNPLSEENGTKTLGQQHAEDDEERFQADLKKAVRQSLDAFQEQQELPLITSSSTPSISCGEVDGNDLPSNELNVENVQEEDVFGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLRRSTTEHVHVGDPCVLCALYEILAALSTASADARREAVAPTSLRIALSNFCPDSNFFQEGQMNDASEVLAVIFDCLHKSLTRSSSVSDTESVESNCMGSWDCASDTCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINAHALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHRFLSAAPHVFTTVLGWQNTCESADDITATLAALNTEVDISVLYRGLDPNITHNLVSVVCYYGQHYHCFAYSHDKKCWIMYDDKTVKVIGGWPDVLTMCEKGHLQPQVLFFEAVN | 1612 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 785799 | 794228 | - | CmaCh10G001730.1 | Cma10g00173 | 301489 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00173 | 1612 | CDD | Peptidase_C19 | 1371 | 1609 | - | - | |
Cma10g00173 | 1612 | Pfam | Protein of unknown function (DUF629) | 342 | 861 | IPR006865 | - | |
Cma10g00173 | 1612 | MobiDBLite | consensus disorder prediction | 949 | 992 | - | - | |
Cma10g00173 | 1612 | MobiDBLite | consensus disorder prediction | 292 | 332 | - | - | |
Cma10g00173 | 1612 | PANTHER | UBIQUITIN SPECIFIC PROTEINASE | 1 | 1612 | - | - | |
Cma10g00173 | 1612 | Gene3D | Tetratricopeptide repeat domain | 62 | 189 | IPR011990 | GO:0005515 | |
Cma10g00173 | 1612 | Coils | Coil | 119 | 139 | - | - | |
Cma10g00173 | 1612 | PANTHER | INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE | 1 | 1612 | - | - | |
Cma10g00173 | 1612 | MobiDBLite | consensus disorder prediction | 1131 | 1154 | - | - | |
Cma10g00173 | 1612 | SUPERFAMILY | Cysteine proteinases | 1279 | 1609 | IPR038765 | - | |
Cma10g00173 | 1612 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 398 | 419 | IPR013087 | - | |
Cma10g00173 | 1612 | Pfam | Protein of unknown function (DUF627) | 71 | 181 | IPR006866 | - | |
Cma10g00173 | 1612 | ProSiteProfiles | Ubiquitin specific protease (USP) domain profile. | 1279 | 1611 | IPR028889 | - | |
Cma10g00173 | 1612 | MobiDBLite | consensus disorder prediction | 292 | 316 | - | - | |
Cma10g00173 | 1612 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Cma10g00173 | 1612 | MobiDBLite | consensus disorder prediction | 36 | 53 | - | - | |
Cma10g00173 | 1612 | Gene3D | Cysteine proteinases | 1265 | 1612 | - | - | |
Cma10g00173 | 1612 | Pfam | Ubiquitin carboxyl-terminal hydrolase | 1280 | 1587 | IPR001394 | GO:0004843|GO:0016579 | |
Cma10g00173 | 1612 | MobiDBLite | consensus disorder prediction | 951 | 981 | - | - | |
Cma10g00173 | 1612 | Coils | Coil | 1035 | 1074 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00173 | Cma11g00167 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00173 | Cma-Chr10:785799 | Cma12g00861 | Cma-Chr12:6386568 | 3.62E-07 | dispersed | |
Cma10g00173 | Cma-Chr10:785799 | Cma11g00167 | Cma-Chr11:870841 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00173 | - | - | mcha:111007268 | 2551.93 |