Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00179 ATGGGTCTTTTCATTTGTGTCTTCTCCATGGTTGTAGCAGCAACCCTTTTAAGCCACTGCTCTGTTTCTCTCACTGAAGATGGTTTAACATTGTTGGAAATCAAAAGTGGTTTAAACGACACTAAGAACGCTCTCAGTAATTGGAGCCCTTCAGATGAATCTCCCTGCAAATGGACTGGTATCTCTTGCCATCCCCAGGACTCTCGTGTCAGCTCAATTAATCTACCATACATGCAACTAGGAGGGATTATATCTCCCAGCATTGGTAAACTTAGCAGATTGCAAAGACTGGCTCTCCACCAAAACGGCTTACATGGGTATATCCCCAATGAACTTGCTAATTGTTCTGAACTTAGAGCACTGTACCTGAGGGCTAATTATCTTGAAGGTGGCATTCCATCAAATATTGGAAACCTTTCTTACCTTGCCATACTGGATCTATCAAGCAATTCCTTTAAGGGAAGCATACCATCATCAATTGGTCGTCTCACACACTTGCGCAATCTGAATTTATCTACCAACTTCTTCTTTGGAGAAATCCCAGATTTTGGAGTTCTTAGCACCTTTGGGAATGACTCGTTCCTTGACAATCAAGATCTTTGTGGCCGGCAAGTGAACAAGCCGTGCCGGACCTCACTGGGATTTCCTGCCGTCTTACCACATGCTGAAAGTGATGAAGCTGCAGTTCCTGCAAAACGACCCTCTCATTACTTGAAGGGACTGTTGATTGGTGCAATATCGACAGCGGGGTTCGTGTTGGTCGTACTTATTGTGTTCATGTGGACTCGTTTGCTGTCAAACAAAGAAAGAACTGCAAAGAGTTACATGGAAGTTAAGAAGCAAAGAAACTACGAACCAAGTGAGAAGCTTATTACATTCCATGGAAATCTTCCATATCCAACATGTGAGATCATAGAGAAGCTGGAGGGCCTGAATGAGACACATGTTATTGGCTCGGGCGGGTTAGGCACTGTGTATCGGATGGTCATGAATGATCGTGGAACATTTGCTGTAAAGAAAATTGATAGGACTCAGGATGGTTCAGAGCAAGTAGTTGAAAGAGAATTGGAGATATTGGGAAGCATTAAACACATAAACTTAGTGAAATTGCGTGGCTATTGCAGGCTTCCTTCTTCAAAGCTTCTGATATATGATTATCTGACAGAGGGTAGCTTGGATGATTTCTTGCACGAACATGGAGCAGGGAAGTGTTTGGATTGGAGTGCTCGGTTAAACATAGCGCTCGGCACCGCTCGAGGACTGGCATACTTGCACCATGATTGCTGTCCAAAGATTGTGCACTGCAACATAAAATCCAGCAACATTCTTCTTGATGAGAACTTAGAGGCGCACGTAGCGGACTTTGGTCTTGCAAAGCTTTCGGTTGATGGGGATTCCCATATCACAACAGTTGTTGCTGGCACATTTGGTTATCTAGCTCCAGAATACTTGCAAAGTGGGATAGGAACTGAGAAGTCTGATGTTTATAGCTTCGGAGTTCTGTTGCTGGAGCTTGTTACAGGGAAGAGACCAAGTGATGCATTTTTCTCAAAGAGGGGCCTAAATGTCGTTGGTTGGTTGAACACCCTGCGGGGAGAAGACCCATTGGAGAACATAGTGGATAATAGGTGCAAGAATGCAGATGCGGAAACATTAGAAGCGATTCTCGAAATAGCAGCAAGGTGCACTAATGGCAACCCGGCTATGCGGCCTACAATGAACCAAGTACTGCAGCTGCTAGAGCGAGAGGTTATGTCGCCCTACCCGAGCGATTACTCCGAGTCTCACTCGGATTATTCATGA 1803 44.65 MGLFICVFSMVVAATLLSHCSVSLTEDGLTLLEIKSGLNDTKNALSNWSPSDESPCKWTGISCHPQDSRVSSINLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNELANCSELRALYLRANYLEGGIPSNIGNLSYLAILDLSSNSFKGSIPSSIGRLTHLRNLNLSTNFFFGEIPDFGVLSTFGNDSFLDNQDLCGRQVNKPCRTSLGFPAVLPHAESDEAAVPAKRPSHYLKGLLIGAISTAGFVLVVLIVFMWTRLLSNKERTAKSYMEVKKQRNYEPSEKLITFHGNLPYPTCEIIEKLEGLNETHVIGSGGLGTVYRMVMNDRGTFAVKKIDRTQDGSEQVVERELEILGSIKHINLVKLRGYCRLPSSKLLIYDYLTEGSLDDFLHEHGAGKCLDWSARLNIALGTARGLAYLHHDCCPKIVHCNIKSSNILLDENLEAHVADFGLAKLSVDGDSHITTVVAGTFGYLAPEYLQSGIGTEKSDVYSFGVLLLELVTGKRPSDAFFSKRGLNVVGWLNTLRGEDPLENIVDNRCKNADAETLEAILEIAARCTNGNPAMRPTMNQVLQLLEREVMSPYPSDYSESHSDYS 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 821374 825418 + CmaCh10G001790.1 Cma10g00179 301495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00179 600 Gene3D Phosphorylase Kinase; domain 1 271 386 - -
Cma10g00179 600 Gene3D Transferase(Phosphotransferase) domain 1 387 591 - -
Cma10g00179 600 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 35 592 - -
Cma10g00179 600 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 592 - -
Cma10g00179 600 SUPERFAMILY L domain-like 25 191 - -
Cma10g00179 600 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cma10g00179 600 SUPERFAMILY Protein kinase-like (PK-like) 285 581 IPR011009 -
Cma10g00179 600 Pfam Protein kinase domain 313 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00179 600 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Cma10g00179 600 ProSiteProfiles Protein kinase domain profile. 311 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00179 600 Pfam Leucine rich repeat 118 174 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00179 Cma18g00130 CCT
Cma10g00179 Cma11g00165 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00179 Cma-Chr10:821374 Cma18g00130 Cma-Chr18:635192 1.04E-29 dispersed
Cma11g00059 Cma-Chr11:301170 Cma10g00179 Cma-Chr10:821374 5.60E-78 dispersed
Cma10g00179 Cma-Chr10:821374 Cma11g00165 Cma-Chr11:851940 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68824 PF00069 Pkinase 1.20E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00179 - - csv:101217728 1073.92