Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00180 ATGTGGCTCATGCTGTGCTCTTCCTTGCTTCCGATGACTCAGCCTTTGTCACGGGCCATGACCTTGTGGTCGACGGATGAGCAGCATGATGAAGAAAGAATGAAAAGGAGGAAAGCTGAAATGAGGGAAGTAAGGGAAGAAAACGAGAGGCTAAAGAAATGTTTGGATGAAACAATGAAGAATTACGAGACACTGAAAAGGCAGCTCCATGAAATGGGTCAAACCAGAGAGGCAAAAAAGTCAACACAAACAACTGCAATTGCCATACATAACCATGAGGTTGAAGAAATGGACCAAATGGTTTCACTCACATTAGGAAGAAGATTATTCAACAACATTTCCTCACCAACAAAATCAGATCCTCAAAACGTGGGCTTTCTGGGAGTGGCTGAAACAAATGTTCAGACCCCATCAACTCATCAAACTCAAACTCCAACGGATAGTGAAGCTAAAGAGGAAGAAACCACACCCATTTGGCCGCCGGGTAAATCCATGAAGGGTTTGCCGGCGCCCCCCACCGGAGAAGATGAAGTTTCTCGGCAGAATCCTCCCAAGAAGCCTAGGGTTTCTGTGAGAGCCCGGTGTGATGCCCCGTTGGTGCAGATGAACGATGGATGCCAGTGGAGAAAATACGGGCAGAAGACAGCAAAAGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACAGGTGCACCCTCATGTCCCGTTAGAAAACAGGTGCAAAGGAGTGTTGATGATATATCCATACTAATCACCACCTATGAAGGAACTCACAACCATCCTTTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCTGCTGCCGCCTCGATGCTCCTCTCGGGCCCTTCTTCATTCGCCACCTCTGCCACCGCCACCGCTGTGGCGAATCTCCATGGATTGAACTCGTATCTCTCTAACAACACCAATTCAAAGGGATTCTACTTGCCAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACTTTAGACCTCACTTCAAACTCTCTCTCAACTAATTATCCCCCAAAGTTTCCTCCTGATTTTGGCTCTTCTCAATACAGCTTCATGCCTTGGAACAATAGTAACAGTGGCTATGGCTATGGCAATGCCAATCAAGCCGGGCATCTACAATTTTCCAGATCTTCAACTCCGCCCCCGCCATTGTCGTCACCTCTACTGGACACGATCGCGGCAGCAACTAAGGCGATTACGTCTGACCCAAATTTCCATTCGGCATTGGCAGCTGCCCTGAGCTCGATCATCGGCGGTGGAAATGGGAGCAAGACAGTTCTTCCAATGGCTAGCTATGTTGAAGAACCTCAGGGAAATGTGTGTGCATCAAGTTTAAGCTCTCAACAAGGAAGTAAGGGGTTTGAGGCAGCTAAATCATTATCATGCTCCACCTCCAAGAGTCCTTCCTCATCTCCTGGGGATAGTAGAGAAAATGGCAAGTGA 1470 47.62 MWLMLCSSLLPMTQPLSRAMTLWSTDEQHDEERMKRRKAEMREVREENERLKKCLDETMKNYETLKRQLHEMGQTREAKKSTQTTAIAIHNHEVEEMDQMVSLTLGRRLFNNISSPTKSDPQNVGFLGVAETNVQTPSTHQTQTPTDSEAKEEETTPIWPPGKSMKGLPAPPTGEDEVSRQNPPKKPRVSVRARCDAPLVQMNDGCQWRKYGQKTAKGNPCPRAYYRCTGAPSCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGPSSFATSATATAVANLHGLNSYLSNNTNSKGFYLPNSSMLSSSLNHPTITLDLTSNSLSTNYPPKFPPDFGSSQYSFMPWNNSNSGYGYGNANQAGHLQFSRSSTPPPPLSSPLLDTIAAATKAITSDPNFHSALAAALSSIIGGGNGSKTVLPMASYVEEPQGNVCASSLSSQQGSKGFEAAKSLSCSTSKSPSSSPGDSRENGK 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 826059 829561 + CmaCh10G001800.1 Cma10g00180 301496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00180 489 Gene3D WRKY domain 187 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma10g00180 489 ProSiteProfiles WRKY domain profile. 197 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma10g00180 489 Pfam WRKY DNA -binding domain 203 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma10g00180 489 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 26 485 - -
Cma10g00180 489 MobiDBLite consensus disorder prediction 132 190 - -
Cma10g00180 489 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 26 485 IPR044810 GO:0003700
Cma10g00180 489 MobiDBLite consensus disorder prediction 465 489 - -
Cma10g00180 489 Coils Coil 34 75 - -
Cma10g00180 489 SMART WRKY_cls 202 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma10g00180 489 SUPERFAMILY WRKY DNA-binding domain 200 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00180 Cma13g00932 CCT
Cma10g00180 Cma13g00932 ECH
Cma10g00180 Cma11g00161 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00324 Cma-Chr7:1412905 Cma10g00180 Cma-Chr10:826059 2.10E-49 dispersed
Cma10g00180 Cma-Chr10:826059 Cma19g00912 Cma-Chr19:8235872 2.57E-62 dispersed
Cma10g00180 Cma-Chr10:826059 Cma11g00161 Cma-Chr11:830454 1.27E-146 wgd
Cma10g00180 Cma-Chr10:826059 Cma13g00932 Cma-Chr13:7382978 3.65E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35689 PF03106 WRKY 5.40E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00180 - - cmax:111484813 817.379