Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00181 ATGGTGTTGGTGTTGGCTTTGGGGGATTTACATATACCGCATAGAGCCCCCGACCTCCCCGAGAAGTTTAAGTCTATGCTTGTTCCTGGCAAGATCCAGCACATCATCTGCACTGGAAACCTTTGTATCAAAGAAGTTCACGACTACTTGAAAACTATTTGTCCTGATTTGCACATTACACGGGGTGAATATGATGAGGAGACTCGCTATCCCGAGACAAAAACTCTGACTATTGGACAATTTAAGTTGGGTCTGTGCCATGGGCATCAGAGCTCCACTCACCGCAAGGATTTGTGTATACAAACTAGAATCATTGTCCCTTTCAATCGGAGCGGGGGAGAGACAGCGGAAAATTCTACTTTTCAATCCCAGATAAACAGAGCCATGGAAGAATCCATCAAGGACCAGCAATCCACTCCACTTCCTGGAAATTCAGCGAGACTGAAGCTTCAGCGCTATACTTTGCGATCGGGGACCAAGTCGAAGGAGGAGAAGCCTCCTGTGCGCCAATTGTCGAATCCTGCATCTTCTGCTTCAAAGAGGGCTAGATCTGTGTCCAGTGTGAGTAAAAGTGTTGGAGTCCTTGATCTGTCTGCCAAGGACAAATATGCTAAACCACCAAGAAGGCTGTCTATTCCAACTAAAAATATAAGCCCAACTCGAAAATTAGTTGGCAACATTACGCCAATATCAGAGGTCCGGAGGACTGCCAGAAGCCAGGGGAAAAGTGACACACCTGTTTCTGATGTTTCACGGTCAAGCAAGAAAAAATTCAACCTATTGTCTTCTACATCATATTGGCTATCACAGATCAAGCTCTCTGAAGCTGCATCTAAGCATTCTGTGTCGCTTGGATTTTTTAAACTTGCATTGGAGGCAGGGTGCAAGCCTCTTCATCGGATGCGTGAGGAGCTAAAGTCCTACATAGATCGTTGCAACCTTGATGAAAGTGAACAAACAGTGAAAGATTTGCTTGAAAACTACAATTCAGCAGAAGATACAGAGCAACTGCAGGATTCTGAAACCTTTTCTCAGGGACCTGAATTGGGAACAAGGTCTTCAGATGAGGAAGTTCATAGCTCTTCATCCACAGTGGAGCCTAGGAAACTTAAACCAAAATCCTTAAACACCGATGTCACCAAAACTACTACCCCGGTCACTGGGGTCAAGCAGAGAAATCTTACTACAACACACGCGAATAGGGGATTTTGGAATAAAAATGCTGCCCCAAGTTCAACTTCAGAGACAGCGAAAAGATCTGGGAAGAAACAGCCTCATAAGCCAAACAAGCAAGAACCCATTCAAGTAAAGGAAAAGGCCAAGAAACATGGAAAAAAACAGCTCAGCGACAAGGCTCCAGGCAGCACGAGTCCTGAAGAAGATTCAGTGCAATCAAACAAAGAAAATTTGGAGTCTCCACCAATTGAAGTGACATCGACAGAAGAAGTGATATGA 1455 44.67 MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHITRGEYDEETRYPETKTLTIGQFKLGLCHGHQSSTHRKDLCIQTRIIVPFNRSGGETAENSTFQSQINRAMEESIKDQQSTPLPGNSARLKLQRYTLRSGTKSKEEKPPVRQLSNPASSASKRARSVSSVSKSVGVLDLSAKDKYAKPPRRLSIPTKNISPTRKLVGNITPISEVRRTARSQGKSDTPVSDVSRSSKKKFNLLSSTSYWLSQIKLSEAASKHSVSLGFFKLALEAGCKPLHRMREELKSYIDRCNLDESEQTVKDLLENYNSAEDTEQLQDSETFSQGPELGTRSSDEEVHSSSSTVEPRKLKPKSLNTDVTKTTTPVTGVKQRNLTTTHANRGFWNKNAAPSSTSETAKRSGKKQPHKPNKQEPIQVKEKAKKHGKKQLSDKAPGSTSPEEDSVQSNKENLESPPIEVTSTEEVI 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 829844 838729 - CmaCh10G001810.1 Cma10g00181 301497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00181 484 MobiDBLite consensus disorder prediction 156 184 - -
Cma10g00181 484 MobiDBLite consensus disorder prediction 376 418 - -
Cma10g00181 484 PANTHER MICROTUBULE-ASSOCIATED FUTSCH-LIKE PROTEIN 129 479 - -
Cma10g00181 484 MobiDBLite consensus disorder prediction 352 375 - -
Cma10g00181 484 MobiDBLite consensus disorder prediction 450 484 - -
Cma10g00181 484 Gene3D - 2 103 IPR029052 -
Cma10g00181 484 PANTHER MICROTUBULE-ASSOCIATED FUTSCH-LIKE PROTEIN 129 479 - -
Cma10g00181 484 Coils Coil 314 334 - -
Cma10g00181 484 MobiDBLite consensus disorder prediction 332 351 - -
Cma10g00181 484 SUPERFAMILY Metallo-dependent phosphatases 1 95 IPR029052 -
Cma10g00181 484 MobiDBLite consensus disorder prediction 332 484 - -
Cma10g00181 484 MobiDBLite consensus disorder prediction 419 449 - -
Cma10g00181 484 MobiDBLite consensus disorder prediction 170 184 - -
Cma10g00181 484 Pfam Calcineurin-like phosphoesterase superfamily domain 4 98 IPR024654 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00181 - - - csv:101218840 542.347
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00181 Cma11g00160 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00882 Cma-Chr2:5241276 Cma10g00181 Cma-Chr10:829844 3.17E-11 dispersed
Cma10g00181 Cma-Chr10:829844 Cma20g00476 Cma-Chr20:2302183 7.79E-12 dispersed
Cma11g00153 Cma-Chr11:803440 Cma10g00181 Cma-Chr10:829844 2.92E-61 transposed
Cma10g00181 Cma-Chr10:829844 Cma11g00160 Cma-Chr11:826825 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g520 . . Bda06g00551 Bda15g00594 . . . Bma12g01002 . . Cma10g00181 Cma11g00160 Car10g00170 Car11g00140 Sed08g0200 . Cpe04g01512 Bhi02g00341 Tan09g2156 Cmetu02g0796 . Hepe09g0134 . . Cla06g01604 Cam06g1778 Cec06g1829 Cco06g1838 Clacu06g1740 Cmu06g1685 Cre06g2501 Cone2ag0859 Cone16ag0153 . . . . . . Blo13g00020 . . . Bpe07g00790 . . Bma08g00209 . Cmo10g00199 Cmo11g00150 . . . . . Cpe18g00804 . . . . . . . . . . . . . . Lsi06g01482 Csa01g00219 Chy02g02514 Cme02g01900
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003808 5 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 0 3 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00181 Cma_Chr10 FPKM 25.666904 25.951742 18.287828 18.68854 34.797695 28.636879 35.713619 7.536217 8.296387 9.345665