Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00184 ATGGGATCTGGAGCGGCCAGTTTTTTCAAGGTCGTCCTAAAAAACTTCGATGTTCTTGCCGGGCCTCTGGTGAGTCTTGTTTATCCTCTATATGCATCAGTTAGGGCCATTGAAACAAAGTCTCATGTGGACGATCAGCAATGGCTTACTTACTGGATTCTATATTCTATGCTCACCCTCTTTGAGCTTACATTTACTAAGGTTCTCGAATGGATCCCTATCTGGCCATATGCAAAGTTAATTTTGTCCTGCTGGTTGGTCATTCCATACTTTAGTGGTGCTGCATATGTGTACGAGCATTTTGTGAGGCCTCTATTCATCAACAAACAGACAGTTAACATTTGGTATGTTCCAAAGATGAAGGACTTCTTCAGCAAGCCCGACGACATCCTAACTGCTGCTGAGAAGTACATCGCCGAAAATGGTACTGAAGACCTCCAAAATATCATCAACAGGGCTGATAAGGCTCGGACAAGTAATCGTTACATGAGCTATTCAGAGGGTCTCGACCATGACCATGACCATGAGTACTGGCACTAG 540 44.07 MGSGAASFFKVVLKNFDVLAGPLVSLVYPLYASVRAIETKSHVDDQQWLTYWILYSMLTLFELTFTKVLEWIPIWPYAKLILSCWLVIPYFSGAAYVYEHFVRPLFINKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTEDLQNIINRADKARTSNRYMSYSEGLDHDHDHEYWH 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 842053 845689 - CmaCh10G001840.1 Cma10g00184 301500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00184 179 Pfam TB2/DP1, HVA22 family 29 105 IPR004345 -
Cma10g00184 179 PANTHER HVA22-LIKE PROTEINS 1 158 IPR004345 -
Cma10g00184 179 PANTHER HVA22-LIKE PROTEIN 1 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00184 K17279 REEP5_6; receptor expression-enhancing protein 5/6 - csv:101220028 348.591
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00184 Cma13g01121 CCT
Cma10g00184 Cma13g01121 ECH
Cma10g00184 Cma11g00151 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00049 Cma-Chr10:180893 Cma10g00184 Cma-Chr10:842053 1.83E-33 dispersed
Cma10g00184 Cma-Chr10:842053 Cma20g00252 Cma-Chr20:1235582 3.58E-36 dispersed
Cma01g00778 Cma-Chr1:4204892 Cma10g00184 Cma-Chr10:842053 7.45E-80 wgd
Cma10g00184 Cma-Chr10:842053 Cma11g00151 Cma-Chr11:794669 2.95E-93 wgd
Cma10g00184 Cma-Chr10:842053 Cma13g01121 Cma-Chr13:8354129 1.92E-85 wgd
Cma10g00184 Cma-Chr10:842053 Cma18g01160 Cma-Chr18:9296551 3.87E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g534 . Blo16g00189 . . . Bpe13g00285 Bma06g00179 . Cmo13g01174 . Cma10g00184 Cma11g00151 Car10g00174 Car11g00143 Sed08g0206 . . Bhi02g00334 Tan09g2137 Cmetu02g1078 . Hepe09g0128 . . Cla06g01598 Cam06g1772 Cec06g1824 Cco06g1831 Clacu06g1735 Cmu06g1679 Cre06g2495 Cone2ag0850 . Cone13ag0078 Cone19ag0078 Lsi02g00059 Csa01g00532 Chy12g01555 Cme12g02009 . . Bda11g01695 Bda14g00845 . Bpe15g00606 Bma03g00823 . . Cmo10g00201 Cmo11g00156 Cma13g01121 . Car13g00956 . . . . . . . . . . Cla04g01210 Cam04g1276 Cec01g1784 Cco01g1831 Clacu04g1305 Cmu04g1280 Cre01g1571 Lsi06g01474 Csa01g00225 Chy02g02507 Cme02g01893
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000844 3 4 0 3 3 3 5 2 3 2 3 3 3 3 3 4 3 5 2 3 3 3 3 2 3 3 3 5 3 2 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00184 Cma_Chr10 FPKM 17.747427 18.050898 20.820948 19.264519 17.973345 22.609621 17.775406 7.842679 8.062368 7.224499