Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00186 ATGGAAGGAGGTGATGAGCTCCACCACCATCACCACCACCACCACCACCACCACAACAACCACCACCGTCCCACCTTCCCATTTCAATTGCTCGAGAAAAAAGACGACGACGCTGCCTCTTGCTCCACTTCTCCTTACCCTTCTCTCGCCATCTCTCCCGACCCCACCACCACCACCGCCACCGCCACCGCCACCACCACCTCCGTCGCTGAGCCTTCTTCCAAGAAGCCACCAGCGAAAAGAACCTCCACGAAAGACCGTCACACGAAAGTCGACGGTCGTGGTCGACGCATCCGAATGCCAGCCCTATGTGCAGCTAGGGTATTTCAACTCACCCGAGAATTGGGTCACAAGTCCGACGGCGAAACCATCGAGTGGCTCCTCCAGCAAGCGGAGCCTGCCGTGATTGCCGCCACCGGAACTGGTACCATCCCGGCTAACTTCACATCCCTCAATATCTCATTACGTAGCTCCGGCTCCACCATGTCCGTCCCTTCGCAGCTTCGGTCATCCTCCTATTACAACCCTAATTTCTCCCTGCATCAACCACGCCGAACCCTCTTCCCAGGATTCGGCCTCTCATCGGAATCCTCCTCCACCGCTCTCCTCAATTTCCAGTCCTCCAACATCGGTAACTCTCTACTCCAAGCCAAACCTGAACTCAGAGACAACACTACCTCTTCATTAGACCTCTCCGATGCCGCGGAGGAAATCAGCATAGGGCGGAAGAGAAGACCGTCCACGGAGCAGGAGTTGTCGTCGTCATCGTCGCAGCATCAAATGGGAGGGTATCTGCTACAGTCAAGTGCAGGGTCGATTCCAGCGAGCCACGGAGGAGGTCAGGTTCCGGCGAATTTTTGGATGCTTACAAATACAAATAACCAAGTGATGGGGGGTGATCCCATATGGACGTTTCCATCGGTTAATAACAGCGGGTTGTACAGAGGGACGATGTCTAGTGGGTTACATTTCATGAACTTCCCAGCCCCAGTCGCGCTAGTTCCAGGTCAGCAATTTGGTTCCGGCGCCGGCGGAGGGAATAATAGTTCCAGTGAGGGACACTTGAATATACTCGCAGGCCTCAATCCGTATCGCTCGGTTTCCACCACCGGCATCATGGAACAGCAGGGAAGTGGATCGCACTCACATCACGGCGGCGGTGGAGATGATCGACATGATTCAACCAGCCACCACTCATAA 1200 55.17 MEGGDELHHHHHHHHHHHNNHHRPTFPFQLLEKKDDDAASCSTSPYPSLAISPDPTTTTATATATTTSVAEPSSKKPPAKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSSYYNPNFSLHQPRRTLFPGFGLSSESSSTALLNFQSSNIGNSLLQAKPELRDNTTSSLDLSDAAEEISIGRKRRPSTEQELSSSSSQHQMGGYLLQSSAGSIPASHGGGQVPANFWMLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGAGGGNNSSSEGHLNILAGLNPYRSVSTTGIMEQQGSGSHSHHGGGGDDRHDSTSHHS 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 850757 851956 - CmaCh10G001860.1 Cma10g00186 301502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00186 399 MobiDBLite consensus disorder prediction 38 96 - -
Cma10g00186 399 MobiDBLite consensus disorder prediction 384 399 - -
Cma10g00186 399 MobiDBLite consensus disorder prediction 1 24 - -
Cma10g00186 399 MobiDBLite consensus disorder prediction 223 261 - -
Cma10g00186 399 ProSiteProfiles TCP domain profile. 84 138 IPR017887 -
Cma10g00186 399 MobiDBLite consensus disorder prediction 9 23 - -
Cma10g00186 399 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 398 IPR005333 GO:0003700
Cma10g00186 399 MobiDBLite consensus disorder prediction 373 399 - -
Cma10g00186 399 Pfam TCP family transcription factor 82 253 IPR017887 -
Cma10g00186 399 MobiDBLite consensus disorder prediction 41 73 - -
Cma10g00186 399 MobiDBLite consensus disorder prediction 78 96 - -
Cma10g00186 399 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 20 398 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00186 Cma13g01122 CCT
Cma10g00186 Cma13g01122 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01856 Cma-Chr4:9424413 Cma10g00186 Cma-Chr10:850757 3.49E-47 dispersed
Cma10g00186 Cma-Chr10:850757 Cma18g01160 Cma-Chr18:9296551 2.11E-93 dispersed
Cma17g01429 Cma-Chr17:9416103 Cma10g00186 Cma-Chr10:850757 4.84E-37 dispersed
Cma18g01215 Cma-Chr18:9602680 Cma10g00186 Cma-Chr10:850757 9.66E-35 dispersed
Cma10g00186 Cma-Chr10:850757 Cma13g01122 Cma-Chr13:8356359 1.03E-17 wgd
Cma10g00186 Cma-Chr10:850757 Cma04g01649 Cma-Chr4:8317424 8.99E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35691 PF03634 TCP 3.40E-39 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00186 - - csv:101221049 606.29