Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00190 ATGGCAGAAGAAACAATCCCTCAACCGGCTGACAACAATCAGGAGGTAACCAACGCCGAAGACATGGAATTGGAGAATACAGAGCCCGGAGCAGAACCGAAAGGATCAAATGATGAAGCAAATGAGGCTTCAAAAATAACTAATGGCGATGCAAATTCGAAGCGGGAGAGGGAGGAAGAAAGCGCCGATGGAAGCGTCGAAGAGGCGAAAAAGCAGAAGATGGAGAAGTCAGTTGAAGAGGGAAGGGTTGAGAAGGCGCAAGGAGACGGGAAGGGAGAGGAGGAGCCCGGTCCTGTGACTATAGGCCCTAAGAGCTTTCGATCGTCCAGGGAATTGTTTGATCACTTCTATAAGTTCCTCCACCACTGGCCTGCCTACTTGAACGTGAACCAGTACGAGAAGATGATGTTGCTGGATTTGCTGAAGAAGGGGCATGCAGAACCAGAGAAAAAGATAGGGTGTGGTATTCATTCTTTCCAAATTCGAAACCATCCTATGTGGAAAAACAAGTGCTTCTTCCTCATTCGGGAGGACGAGTCTGTTGATGACTTCAGCTTCAGAAAGTGTGTGGATCATATCCTTCCCCTTCCTGAAAACCTCAAAGGTAGATCTGATGCAAACAAGGCATTTGGCGGTGGCAAGCACCGCGGTGGCGGTGGCGGTGGCGGTAGCGGTGGAGGACGAGGTGGGGGTGGTGGTGGCCGTGGAAGAGGAGGTAGAACCGACAATTATTCTGCGTTGGATTGGAACTGCAATTTTGGGTTTCCGGACACCTTTTTTGACGTTGTTCCTTTGCTTGAGAGTTGCGCTAATAATGACTCGTTTTTCAACCCCAAGGACATAGATCCTATTAGCACTTTTATATCAGAAGATGGGGGCGTTGGGATTTGGAGTGAATTCGAGAGTGAAGCATTTGGGCTTGAGGAAGGAAGCGGAGAAAATGGTAATGGAGGGATGGGAAACGAGGGGACGATGATGAGGAAGGCCAAAAGAAAGTGCTGCAGAGAAACGAGCAATAGCAGTGGCAGTGGCAGTGCATCAACAAAAACGTTGTCAAGAGAAGCAATATCTGAGTTCTTCTACATGCCCATAACTCAGGCGGCTAAACAGCTGAATGTCGGACTCACTCTGTTGAAGAAGAGATGCAGAGAATTGGGTATAAGAAGATGGCCTCATAGGAAGCTCATGAGCCTACAGACACTAATCAAGAACGAGCTTCAAAAGGAAGATGGAGATCAGGGAGTGAATAAGTTGAGCAATGTATTGAAGATTTTAGAGAATGAGAAGAAATTAATGGAGGAGAGACCAGATTTGCAGTTGGAGGACAATACAAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAACGGAAGCTTTCAGGAACCAACAATGGCTCCCAGTATTTCTCCATTAATGGTGGAATGATTTGCAGAGATGATCAAGAACAAGGGGAGGAGGAGGAAGAAGATGATGAAGAAATGAAATATCTGTTGATGGGTTGCTCGTTTTCGTCGAGTATTGGCAGCCCATTGATGTAA 1545 46.99 MAEETIPQPADNNQEVTNAEDMELENTEPGAEPKGSNDEANEASKITNGDANSKREREEESADGSVEEAKKQKMEKSVEEGRVEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPMWKNKCFFLIREDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGGGGGGSGGGRGGGGGGRGRGGRTDNYSALDWNCNFGFPDTFFDVVPLLESCANNDSFFNPKDIDPISTFISEDGGVGIWSEFESEAFGLEEGSGENGNGGMGNEGTMMRKAKRKCCRETSNSSGSGSASTKTLSREAISEFFYMPITQAAKQLNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNELQKEDGDQGVNKLSNVLKILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGTNNGSQYFSINGGMICRDDQEQGEEEEEDDEEMKYLLMGCSFSSSIGSPLM 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 865735 870638 + CmaCh10G001900.1 Cma10g00190 301506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00190 514 Gene3D - 95 193 - -
Cma10g00190 514 MobiDBLite consensus disorder prediction 205 237 - -
Cma10g00190 514 Pfam Protein of unknown function (DUF3223) 118 190 - -
Cma10g00190 514 Coils Coil 415 435 - -
Cma10g00190 514 MobiDBLite consensus disorder prediction 1 105 - -
Cma10g00190 514 PANTHER PROTEIN EMBRYO DEFECTIVE 514 12 226 - -
Cma10g00190 514 ProSiteProfiles RWP-RK domain profile. 335 418 IPR003035 -
Cma10g00190 514 Pfam RWP-RK domain 351 398 IPR003035 -
Cma10g00190 514 MobiDBLite consensus disorder prediction 49 92 - -
Cma10g00190 514 PANTHER - 12 226 IPR044673 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00190 - - - cmax:111484822 443.736
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00190 Cma11g00144 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00190 Cma-Chr10:865735 Cma18g01327 Cma-Chr18:10140319 1.56E-30 dispersed
Cma11g00144 Cma-Chr11:769297 Cma10g00190 Cma-Chr10:865735 2.73E-102 transposed
Cma10g00190 Cma-Chr10:865735 Cma11g00143 Cma-Chr11:765229 3.01E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g556 . . . . . . Bma06g00170 . . . Cma10g00190 Cma11g00144 Car10g00180 Car11g00150 Sed08g0214 . Cpe04g01500 Bhi02g00326 Tan09g2124 Cmetu02g0201 . Hepe09g0121 . . Cla06g01592 Cam06g1765 Cec06g1818 Cco06g1824 Clacu06g1728 Cmu06g1672 Cre06g2488 Cone2ag0844 Cone16ag0171 . . . . . . . . . Bda14g00853 . . . . . Cmo10g00207 Cmo11g00165 . . . . . Cpe18g00795 . . . . . . . . . . . . . . Lsi06g01465 Csa01g00233 Chy02g02499 Cme02g01885
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00143 CST 137 262 AtRKD Transcription Factor Family AT1G18790 68.4 3.5e-39 159.5
Cma10g00190 CST 330 463 AtRKD Transcription Factor Family AT1G18790 64.7 2.3e-38 156.8
Cma10g00190 CST 345 513 AtRKD Transcription Factor Family AT1G74480 54.7 5.6e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006381 1 1 1 1 0 1 3 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35693 PF11523 DUF3223 3.20E-23 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00190 Cma_Chr10 FPKM 3.367511 4.119494 3.429403 3.167952 4.116808 3.981223 4.064769 3.49979 3.401482 3.522372