Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00190 ATGGCAGAAGAAACAATCCCTCAACCGGCTGACAACAATCAGGAGGTAACCAACGCCGAAGACATGGAATTGGAGAATACAGAGCCCGGAGCAGAACCGAAAGGATCAAATGATGAAGCAAATGAGGCTTCAAAAATAACTAATGGCGATGCAAATTCGAAGCGGGAGAGGGAGGAAGAAAGCGCCGATGGAAGCGTCGAAGAGGCGAAAAAGCAGAAGATGGAGAAGTCAGTTGAAGAGGGAAGGGTTGAGAAGGCGCAAGGAGACGGGAAGGGAGAGGAGGAGCCCGGTCCTGTGACTATAGGCCCTAAGAGCTTTCGATCGTCCAGGGAATTGTTTGATCACTTCTATAAGTTCCTCCACCACTGGCCTGCCTACTTGAACGTGAACCAGTACGAGAAGATGATGTTGCTGGATTTGCTGAAGAAGGGGCATGCAGAACCAGAGAAAAAGATAGGGTGTGGTATTCATTCTTTCCAAATTCGAAACCATCCTATGTGGAAAAACAAGTGCTTCTTCCTCATTCGGGAGGACGAGTCTGTTGATGACTTCAGCTTCAGAAAGTGTGTGGATCATATCCTTCCCCTTCCTGAAAACCTCAAAGGTAGATCTGATGCAAACAAGGCATTTGGCGGTGGCAAGCACCGCGGTGGCGGTGGCGGTGGCGGTAGCGGTGGAGGACGAGGTGGGGGTGGTGGTGGCCGTGGAAGAGGAGGTAGAACCGACAATTATTCTGCGTTGGATTGGAACTGCAATTTTGGGTTTCCGGACACCTTTTTTGACGTTGTTCCTTTGCTTGAGAGTTGCGCTAATAATGACTCGTTTTTCAACCCCAAGGACATAGATCCTATTAGCACTTTTATATCAGAAGATGGGGGCGTTGGGATTTGGAGTGAATTCGAGAGTGAAGCATTTGGGCTTGAGGAAGGAAGCGGAGAAAATGGTAATGGAGGGATGGGAAACGAGGGGACGATGATGAGGAAGGCCAAAAGAAAGTGCTGCAGAGAAACGAGCAATAGCAGTGGCAGTGGCAGTGCATCAACAAAAACGTTGTCAAGAGAAGCAATATCTGAGTTCTTCTACATGCCCATAACTCAGGCGGCTAAACAGCTGAATGTCGGACTCACTCTGTTGAAGAAGAGATGCAGAGAATTGGGTATAAGAAGATGGCCTCATAGGAAGCTCATGAGCCTACAGACACTAATCAAGAACGAGCTTCAAAAGGAAGATGGAGATCAGGGAGTGAATAAGTTGAGCAATGTATTGAAGATTTTAGAGAATGAGAAGAAATTAATGGAGGAGAGACCAGATTTGCAGTTGGAGGACAATACAAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAACGGAAGCTTTCAGGAACCAACAATGGCTCCCAGTATTTCTCCATTAATGGTGGAATGATTTGCAGAGATGATCAAGAACAAGGGGAGGAGGAGGAAGAAGATGATGAAGAAATGAAATATCTGTTGATGGGTTGCTCGTTTTCGTCGAGTATTGGCAGCCCATTGATGTAA 1545 46.99 MAEETIPQPADNNQEVTNAEDMELENTEPGAEPKGSNDEANEASKITNGDANSKREREEESADGSVEEAKKQKMEKSVEEGRVEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPMWKNKCFFLIREDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGGGGGGSGGGRGGGGGGRGRGGRTDNYSALDWNCNFGFPDTFFDVVPLLESCANNDSFFNPKDIDPISTFISEDGGVGIWSEFESEAFGLEEGSGENGNGGMGNEGTMMRKAKRKCCRETSNSSGSGSASTKTLSREAISEFFYMPITQAAKQLNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNELQKEDGDQGVNKLSNVLKILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGTNNGSQYFSINGGMICRDDQEQGEEEEEDDEEMKYLLMGCSFSSSIGSPLM 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 865735 870638 + CmaCh10G001900.1 Cma10g00190 301506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00190 514 Gene3D - 95 193 - -
Cma10g00190 514 MobiDBLite consensus disorder prediction 205 237 - -
Cma10g00190 514 Pfam Protein of unknown function (DUF3223) 118 190 - -
Cma10g00190 514 Coils Coil 415 435 - -
Cma10g00190 514 MobiDBLite consensus disorder prediction 1 105 - -
Cma10g00190 514 PANTHER PROTEIN EMBRYO DEFECTIVE 514 12 226 - -
Cma10g00190 514 ProSiteProfiles RWP-RK domain profile. 335 418 IPR003035 -
Cma10g00190 514 Pfam RWP-RK domain 351 398 IPR003035 -
Cma10g00190 514 MobiDBLite consensus disorder prediction 49 92 - -
Cma10g00190 514 PANTHER - 12 226 IPR044673 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00190 Cma11g00144 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00190 Cma-Chr10:865735 Cma18g01327 Cma-Chr18:10140319 1.56E-30 dispersed
Cma11g00144 Cma-Chr11:769297 Cma10g00190 Cma-Chr10:865735 2.73E-102 transposed
Cma10g00190 Cma-Chr10:865735 Cma11g00143 Cma-Chr11:765229 3.01E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35693 PF11523 DUF3223 3.20E-23 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00190 - - cmax:111484822 443.736