Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00191 ATGACTGTGATCTTCCGGCGATGCCGTTGTTCGGCGTATCGGCATCCTCATTCTCTTCGCCTTCCTCGTTTCGCATCCACCGCTTCACTCCTTCACTCTCCGATCTCTCTGCTTTCTTCCAAATTTCGTCAACAAAACTCAACGCTTCACTTCGATAGAGAGCCGCTGATTTCTCTCATAAAATCATGCACCCACAAATCACAATTGCTGCAAATCCATGCCCACATGATCCGCACTTCTTTCATTCAAGACCCCATTGTTTCCCTCCGCTTCTTGACTCGCATCGTTTCCGCGCCTTTTCGCGAATTGGGCTATTCGCGAAGATTCTTCTCTCAGCTGACGAACCCATTTGTTTCTCATTACAATACGCTGTTGAGAGCCTATTCGTTGAGCCGTTCACCTCTGGAGGGATTGTACATGTACAGAGATATGGAGAGGCAAGGTGTTCATGCTGATCCTTTGTCTTCTTCCTTTGCCCTTAAGTCGTGTATAAGAATGCTTTCATTATTTAGTGGGATTCAGATTCACGCAAGGATCTTTAGAAATGGGCATCAATCGGATAGTCTTCTGCTCACCTCCATGATGGATTTGTATTCTCATTGTGGCAAACTTAAGGATGCATGCAAACTGTTCGATGAAATTCCTCAAAGAGATGTTGTTGCTTGGAACGTTTTGATTTCGTGTCTAACTCGAAATAAACGAACAAGGGATGCTTTGGGTTTGTTTGAGATCATGCAGAGTCCAACGTATCTCTGCAAACCTGATAAAGTTACCTGTTTACTTCTTCTCCAAGCCTGTGCGGACTTGAATGCATTGGAATTTGGCGAAAGGATTCATAGTCATATTCAACAGCACGGTTATAATACCGAGAGTAATTTGTGCAATTCGCTGATATCCATGTATTCGAGGTGTGGACGTGTGGATAAGGCGTATGAAGTGTTCGATAAAATGCCTGAGAAAAATGTTGTTTCATGGAGTGCGATGATTTCCGGGTTATCAATGAATGGACACGGGAGAGAAGCTATTGAAGCGTTTTGGGCGATGCAAAAGAAGGGTGTTGAGCCTGATGATCACACTTTCACTGCCGTTCTTTCTGCTTGTAGCCATTGTGGTCTGGTTGATGAAGGAATGGCGTTTTTTGATCGTATGAGACAAGAGTTCATGATAGTTCCCACCGTCCATCACTATGGATGTATGGTTGATCTCTTGGGTCGTGCTGGAATGCTCGACCAAGCCTATCAGCTCGTAATGTCAATGGAGGTGAATCCAGATGCGACAATGTGGAGGACCCTTCTTGGAGCTTGCAGAATTCACGGTCATGCAAACCTTGGGGAGCGCGTAATTGAGCATTTGGTTGAACTCAAATCTCAAGAAGCAGGTGATTATGTGCTGCTGCTGAACATTTATTCTTCGGCTGGGAACTGGGACAAGGTAACTGAATTGAGGAAATTCATGAAGGAAAGGGGTATCTATACTACACCCGGCTGCACCACAATAGAACTGAATGGGGTGGTGCATGAGTTTGCTGTGGATGATATTTCGCATCCGATGAAGGACAAGATCTACAAGCAGCTGGATGAGATCAACCAGCAGCTAAAGATTGCAGGTTATGAAGCTGAAATATCATCTGAATTACACAACTTAAAGGCAGAAGATAAGGGGTATGCGCTTTCTTTCCATAGTGAGAAATTGGCCATAGCCTTTGGGGTTCTTGCAACCCCGCCAGGAGGAACCATCAGAGTGGCAAACAATCTTCGTACTTGCCTGGATTGTCATAACTTTGCTAAGTATGTCTCAAGTGTTTATAACAGAAAAGTGGTTGTTAGGGACCGAAGTCAGTTCCATCATTTCCGAGAGGGTCGGTGTTCCTGCAACGATTATTGGTAG 1887 44.73 MTVIFRRCRCSAYRHPHSLRLPRFASTASLLHSPISLLSSKFRQQNSTLHFDREPLISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSHYNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFALKSCIRMLSLFSGIQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLKDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCKPDKVTCLLLLQACADLNALEFGERIHSHIQQHGYNTESNLCNSLISMYSRCGRVDKAYEVFDKMPEKNVVSWSAMISGLSMNGHGREAIEAFWAMQKKGVEPDDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIVPTVHHYGCMVDLLGRAGMLDQAYQLVMSMEVNPDATMWRTLLGACRIHGHANLGERVIEHLVELKSQEAGDYVLLLNIYSSAGNWDKVTELRKFMKERGIYTTPGCTTIELNGVVHEFAVDDISHPMKDKIYKQLDEINQQLKIAGYEAEISSELHNLKAEDKGYALSFHSEKLAIAFGVLATPPGGTIRVANNLRTCLDCHNFAKYVSSVYNRKVVVRDRSQFHHFREGRCSCNDYW 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 870899 872785 + CmaCh10G001910.1 Cma10g00191 301507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00191 628 Pfam PPR repeat family 320 368 IPR002885 -
Cma10g00191 628 Pfam PPR repeat family 217 267 IPR002885 -
Cma10g00191 628 Pfam PPR repeat 295 317 IPR002885 -
Cma10g00191 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Cma10g00191 628 Pfam E motif 440 500 IPR046848 -
Cma10g00191 628 Pfam DYW family of nucleic acid deaminases 536 628 IPR032867 GO:0008270
Cma10g00191 628 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 49 620 - -
Cma10g00191 628 PANTHER OS08G0434000 PROTEIN 49 620 - -
Cma10g00191 628 TIGRFAM PPR: pentatricopeptide repeat domain 323 356 IPR002885 -
Cma10g00191 628 TIGRFAM PPR: pentatricopeptide repeat domain 293 322 IPR002885 -
Cma10g00191 628 TIGRFAM PPR: pentatricopeptide repeat domain 121 152 IPR002885 -
Cma10g00191 628 TIGRFAM PPR: pentatricopeptide repeat domain 358 386 IPR002885 -
Cma10g00191 628 TIGRFAM PPR: pentatricopeptide repeat domain 220 247 IPR002885 -
Cma10g00191 628 Pfam PPR repeat 120 149 IPR002885 -
Cma10g00191 628 Pfam PPR repeat 395 420 IPR002885 -
Cma10g00191 628 Gene3D Tetratricopeptide repeat domain 120 268 IPR011990 GO:0005515
Cma10g00191 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Cma10g00191 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 386 IPR002885 -
Cma10g00191 628 Gene3D Tetratricopeptide repeat domain 269 384 IPR011990 GO:0005515
Cma10g00191 628 Gene3D Tetratricopeptide repeat domain 385 563 IPR011990 GO:0005515
Cma10g00191 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Cma10g00191 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 320 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00191 - - - mcha:111007242 1105.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00191 Cma11g00143 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00191 Cma-Chr10:870899 Cma01g01066 Cma-Chr1:7887582 1.51E-151 dispersed
Cma10g00191 Cma-Chr10:870899 Cma10g00565 Cma-Chr10:2591943 6.62E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g557 . . . Bda15g00603 Bpe12g00547 . . . . . Cma10g00191 Cma11g00143 Car10g00182 Car11g00151 . . . Bhi02g00318 . . . . . . Cla06g01591 . . . . . . Cone2ag0843 . . . . . . . Blo13g00009 . . . . . . Bma08g00221 . Cmo10g00208 Cmo11g00166 . . . . . Cpe18g00794 . . . . . . . . . . . . . . Lsi06g01463 Csa01g00234 Chy02g02498 Cme02g01884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006872 1 7 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 0 2 1 1 0 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00191 Cma_Chr10 FPKM 0.505564 0.826734 1.196481 0.817128 3.823436 3.716242 4.425746 1.267713 1.349186 1.514983