Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00192 ATGGAAGCAATATCGGCAGCTACTTTGTCCATTGGAGCAACTGCATCACATAATTCTAAACTCATCTCATTTTCTCAATCAAAATCTGCAGCCTTGAGGGTCAATTCACGAGAGTCTCTTCCAAGCTTCTGCGGCCTCAAGGCAGCTTCGTTTCTTCGATGCGACTCGGAGTCATCTTTCCTAGGGAACCAGAGCAGTACCGCCCTATGGCGTCATCTTGCTCCGTCAGCTCAAAGAGTGAACCAGAATGTATATAAAAATCTTCAACCTCAAGCCTCTTACAAAGTGGCTGTTCTTGGAGCTGCTGGAGGTATAGGTCAGCCTCTGTCGCTTCTCATCAAGATGTCGCCGTTAATTTCGACCCTGAACCTTTATGATATTGCAAATGTTAAGGGTGTTGCTGCTGATATTAGCCACTGTAACACTCCCTCAAAAGTTCAGGCTTTCACTGGACCCTCTGAATTAGCCAATGCTTTAAAAGATGTAGATGTTGTGGTCATACCTGCTGGGGTTCCAAGAAAGCCTGGTATGACTCGTGATGATCTCTTTAACATAAATGCTGGCATAGTGAAAACTTTGGTCGAGGCAGTCGCTGATAATTGTCCTGATGCATTCATTCATATCATTAGCAACCCTGTGAACTCGACTGTGCCGATAGCAGCAGAAGTTCTAAAGCAGAAGGGCGTGTTTGATCCAAAGAAGCTTTTCGGGGTTACTACATTGGATGTCGTCCGGGCAAACACGTTTGTCGCTGAAAAGAAGAACCTTAAACTGATTGATGTTGATGTACCGGTTGTTGGGGGGCATGCGGGTATAACAATTCTTCCTTTGCTGTCAAAGACTCAACCATCAGTGAGCTTTACAGATGAAGAAGTTCAAGCACTGACTGTTAGGATTCAAAATGCGGGAACTGAGGTCGTGGAAGCGAAGGCAGGGGCGGGATCTGCTACCCTTTCAATGGCATATGCTGCAGCAAGATTTGTCGAATCATCTCTTCGTGCTTTGGATGGAGACAGTGATGTCTATGAGTGCACATTTGTGCAGTCTGATCTAACTGAGCTTCCCTTCTTTGCATCGAGAGTTAAGCTTGGGAGGAAAGGAATTGAAGCCTTTGTAACGTCTGATCTACAGGGTTTAACCGAGTACGAGGAGAAGGCTCTTGAAGCTCTAAAGCCAGAACTGAAGGCAAGCATTGAGAAGGGCATTGCTTTTACACAGAAGCCTTCGGTGGCTGCTTAA 1239 45.76 MEAISAATLSIGATASHNSKLISFSQSKSAALRVNSRESLPSFCGLKAASFLRCDSESSFLGNQSSTALWRHLAPSAQRVNQNVYKNLQPQASYKVAVLGAAGGIGQPLSLLIKMSPLISTLNLYDIANVKGVAADISHCNTPSKVQAFTGPSELANALKDVDVVVIPAGVPRKPGMTRDDLFNINAGIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVFDPKKLFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTQPSVSFTDEEVQALTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDSDVYECTFVQSDLTELPFFASRVKLGRKGIEAFVTSDLQGLTEYEEKALEALKPELKASIEKGIAFTQKPSVAA 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 873816 875054 - CmaCh10G001920.1 Cma10g00192 301508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00192 412 Pfam lactate/malate dehydrogenase, NAD binding domain 95 237 IPR001236 GO:0016491
Cma10g00192 412 Gene3D - 92 238 - -
Cma10g00192 412 ProSitePatterns Malate dehydrogenase active site signature. 238 250 IPR001252 GO:0006108|GO:0016615
Cma10g00192 412 PANTHER MALATE AND LACTATE DEHYDROGENASE 28 412 - -
Cma10g00192 412 SUPERFAMILY LDH C-terminal domain-like 238 405 IPR015955 GO:0003824|GO:0016616
Cma10g00192 412 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 239 404 IPR022383 GO:0016616
Cma10g00192 412 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 95 406 IPR010097 GO:0006099|GO:0030060
Cma10g00192 412 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 28 412 - -
Cma10g00192 412 CDD MDH_glyoxysomal_mitochondrial 94 404 IPR010097 GO:0006099|GO:0030060
Cma10g00192 412 Gene3D - 239 410 IPR015955 GO:0003824|GO:0016616
Cma10g00192 412 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 84 238 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00192 K00026 MDH2; malate dehydrogenase [EC:1.1.1.37] - csv:101214377 705.286
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00192 Cma11g00142 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00192 Cma-Chr10:873816 Cma16g00418 Cma-Chr16:2090559 1.37E-143 dispersed
Cma10g00192 Cma-Chr10:873816 Cma11g00142 Cma-Chr11:761504 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g558 . . Bda06g00544 . Bpe12g00545 . . Bma12g00996 . . Cma10g00192 Cma11g00142 Car10g00183 Car11g00152 . . . Bhi02g00315 Tan09g2120 . . Hepe09g0117 . . Cla06g01590 Cam06g1762 Cec06g1815 Cco06g1821 Clacu06g1725 Cmu06g1669 Cre06g2485 . . . . . . . . Blo13g00007 Blo15g00310 . . Bpe07g00781 . . Bma08g00222 . . Cmo11g00167 . . . . . . . . . . . . . . . . . . . . Lsi06g01462 Csa01g00236 Chy02g02496 Cme02g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003196 1 4 2 3 2 1 2 2 1 4 1 1 1 3 2 1 1 2 0 2 3 1 1 1 0 0 1 4 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00192 Cma_Chr10 FPKM 141.291367 143.818222 70.178032 66.036865 17.988771 18.06352 18.049526 87.477318 90.644646 92.812927