Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00196 ATGCTGGAAATTAAGGACCCTGCGATTAAGATTTTCGGCAAGGAGATTCAACTTCCGGCCGACTGTGAAGTTCCGTTGATCGAAAGTGACGATTCGGATTCTAGTTCCCAGAAAGAAAATCGAGATGAGGCAGTAGAAAAGGATGTAGGAAAAGCCACTGAGAATTCAGCTGCAAAAGAAGAAACTCTACATGATTCGGAGGATTCTGCATGTGTACAAACGGCTAATGAGGCACACATGAATCCTGAAGTGCTATCAATGAATGAGAATGACAAACCAGAGAAGGAACAAAATGACGCACCCAACTCAAAAGAGAAATTGAAGAAGCCAGACAAAATACTTCCATGTCCCCGCTGCAATAGCATGGAAACCAAGTTTTGTTATTACAATAATTATAATGTCAACCAACCACGCCATTTTTGCAAAGCCTGTCAAAGATATTGGACTGAAGGCGGTAATAGGAGAAATGTCCCTGTTGGAGCTGGCCGCCGAAAGAACAAGAACTCTGCCTCACATTACCGTCATATTACAATCTCAGAGGCTCTTCAAGCTGCACAAATGGATATTCCCAATGGGGTCAACCACCTACCATCCAAAAGCAATGGCCGAGTCCTCAATTTTAGTGCAAACACATCTGTGTGTGAATCTATGGCCACTGTCCTCAATCCTCCGGAAAGAAAGGTCTTGAATGGAACTAGGAATGAATTTCATAGACTCGAAGACCAAGGAATTAAAGCACCTTGTAAGGGTGGGGAAACTGGCGATGATTGTTCCAGTGCATCTTCAGTGACTGTGTCAAGTTCAACGGAGGAAGGAGCTAGGAAGTGCCCTCAAGAACCACAGATGCAGAACATCAATGGTTTCCCTCAAATCCCATATCTTCCCGGTGTTCCTTGGCCTTGTACATGGAATGCACCACTACCTCCACCGGCATTCTTCCCTCCTGGAGTTCCTTTATCATTCTATCCTGCGACATACTGGAGCTGTAGCGTTCCAGGTGCTTGGAATGTACCTTGGTTCTCTCCACATCCCTGTTCTCCAAACTCTGGTCCAATTTCTCTTATACTAGGGAAGCATTCCAGAGATGGTGACAAACTCCAGGCTGATAATTCTGGGAGGGAAGAGCCTCCAAAACAGAAAAAAGGATCTGTTTTGGTTCCCAAAACTTTGAGGATTGATGATCCAAATGAAGCCGCTAAGAGTTCGATATGGGAGACACTTGGTATTAAGAATGATTCAACCAAAGCTGTTAATCTGTCTAAGATCTTCCAATCAAAGGGTGGTCAAAAGAATAGTGTATCTGAAGTGTTATCTCCTGTTTTGCAAGCCAACCCTGCAGCGTTCTCAAGATCTCTTACTTTCCGTGAGCATTCGTGA 1377 44.23 MLEIKDPAIKIFGKEIQLPADCEVPLIESDDSDSSSQKENRDEAVEKDVGKATENSAAKEETLHDSEDSACVQTANEAHMNPEVLSMNENDKPEKEQNDAPNSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGNRRNVPVGAGRRKNKNSASHYRHITISEALQAAQMDIPNGVNHLPSKSNGRVLNFSANTSVCESMATVLNPPERKVLNGTRNEFHRLEDQGIKAPCKGGETGDDCSSASSVTVSSSTEEGARKCPQEPQMQNINGFPQIPYLPGVPWPCTWNAPLPPPAFFPPGVPLSFYPATYWSCSVPGAWNVPWFSPHPCSPNSGPISLILGKHSRDGDKLQADNSGREEPPKQKKGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSTKAVNLSKIFQSKGGQKNSVSEVLSPVLQANPAAFSRSLTFREHS 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 882611 885624 + CmaCh10G001960.1 Cma10g00196 301512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00196 458 ProSiteProfiles Zinc finger Dof-type profile. 114 168 IPR003851 GO:0003677|GO:0006355
Cma10g00196 458 MobiDBLite consensus disorder prediction 362 381 - -
Cma10g00196 458 PANTHER CYCLIC DOF FACTOR 1 1 457 - -
Cma10g00196 458 MobiDBLite consensus disorder prediction 20 112 - -
Cma10g00196 458 MobiDBLite consensus disorder prediction 255 282 - -
Cma10g00196 458 MobiDBLite consensus disorder prediction 88 112 - -
Cma10g00196 458 ProSitePatterns Zinc finger Dof-type signature. 116 152 IPR003851 GO:0003677|GO:0006355
Cma10g00196 458 MobiDBLite consensus disorder prediction 362 383 - -
Cma10g00196 458 PANTHER CYCLIC DOF FACTOR 2 1 457 IPR045174 GO:0003700|GO:0006355
Cma10g00196 458 MobiDBLite consensus disorder prediction 68 83 - -
Cma10g00196 458 MobiDBLite consensus disorder prediction 250 282 - -
Cma10g00196 458 Pfam Dof domain, zinc finger 111 168 IPR003851 GO:0003677|GO:0006355
Cma10g00196 458 MobiDBLite consensus disorder prediction 32 67 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00196 Cma13g01138 CCT
Cma10g00196 Cma13g01138 ECH
Cma10g00196 Cma11g00141 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00196 Cma-Chr10:882611 Cma11g01017 Cma-Chr11:5512350 2.94E-116 dispersed
Cma01g00791 Cma-Chr1:4266501 Cma10g00196 Cma-Chr10:882611 1.85E-122 wgd
Cma10g00196 Cma-Chr10:882611 Cma11g00141 Cma-Chr11:757756 0 wgd
Cma10g00196 Cma-Chr10:882611 Cma13g01138 Cma-Chr13:8406675 9.53E-114 wgd
Cma10g00196 Cma-Chr10:882611 Cma14g00586 Cma-Chr14:2908640 1.22E-72 wgd
Cma10g00196 Cma-Chr10:882611 Cma18g01146 Cma-Chr18:9232241 2.23E-70 wgd
Cma10g00196 Cma-Chr10:882611 Cma04g01665 Cma-Chr4:8375928 1.73E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35694 PF02701 zf-Dof 1.50E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00196 - - csv:101222224 778.089