Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00197 ATGCCAACCTTCCTCCCCTGGCCTCATCAAATCAGCCCTTTTGCCTCCTCTTCCTCTTTTCTTTGTCTTAGGCATTTTCACAAACACATTGTAGACCTTCCAAACAGGAAAATGGCGTTTCTTGGATTAGTCTTGGTGGGTCTTCTTCTATCTTTGGGATGTGATTCTGTTCATGGCAACAATGGAGGAGGAGGTTGGACTGATGCCCACGCCACGTTCTACGGTGGGGGCGACGCTGCTGGTACAATGGGAGGGGCTTGTGGGTATGGAAACCTATACAGCCAGGGATATGGGACGAACACAGCAGCTCTGAGCACAGCCCTATTCAACAATGGACTGAGCTGTGGGGCTTGCTTCGAAATCAAGTGCGTAAATGACGCAAGATGGTGTCTTTCAAGCTCCATTGTGGTCACTGCCACCAACTTTTGTCCACCAAACAACGCGCTCCCCAACAACGCCGGCGGCTGGTGTAACCCTCCACAGCACCATTTCGATCTCTCCCAGCCCGTCTTCCAGCAAATCGCCCATTACAAAGCCGGCATTGTCCCAGTGGCATACAGAAGGGTTTCTTGTCAGAAGAAAGGAGGCATCAGATTCACAATCAACGGCCATTCATACTTCAATTTAGTTCTTATAACCAACGTCGGGGGCGCTGGGGATGTTCATGGAGTGTGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAATTCGTATCTGGATGGACAAAGGCTATCGTTCAAAGTAACCACCGGCGATGGGCGGACGGTGATATCCAACGGCGTAGTGCCAGGTGGGTGGAGATTCGGTCAGACATTTAGTGGGCTGCAAGAGAGTTTGTGGGTTTGGGCTTGGGGTTCTGCTGTGTGTTTTGAAGGCAATGGCAGTGTGAAAGATGGTGGCAGCGGTAGGCATTTGACACCCGCCACTTTGTTTCTGCGTTATAGCTTAGGACATGGGAGTGTGTGGGATCGTTCAGTAGAGATGGCCACCGTCACTACTCAAGCTTCCGCCGCCGTTTTCCGGCCATGCGCCGCCCGATCGAGATTCCTTACTGGTTCTTCCGGCAAACTCCACCGTATGCTGTCGGTTAAACCAGTCGCTGCTTCGTCTTCTTCATCCTTCAAGGTTGAAGCCAAGAAGGGAGAGTGGTTGCCTGGTCTGCCATCTCCGGCATACTTAAATGGCAGTCTTCCAGGGGATAATGGATTTGACCCACTGTCTCTAGCCGAAGACCCAGAGAACTTGAAGTGGTTCGTGCAAGCGGAGTTGGTGAACGGCCGGTGGGCTATGCTGGGTGTCGCCGGAATGCTTCTGCCGGAGGTTTTCACGAAGATTGGAATCATCAACGCTCCTCAATGGTACGACGCCGGGAAAGCAGAGTACTTCGCATCGTCTTCGACTCTGTTCGTGATCGAGTTCATCCTTTTCCATTACGTGGAAATCCGAAGGTGGCAGGACATCAAGAACCCCGGCAGCGTGAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCCCCAAATGAAGTGGGTTACCCCGGTGGGATTTTCAACCCCCTCAATTTCGCTCCCACTCAGGAAGCCAAAGAGAAGGAACTAGCCAATGGTAAGCTCTTACAACTAAACCTTCAGATATAA 1668 51.68 MPTFLPWPHQISPFASSSSFLCLRHFHKHIVDLPNRKMAFLGLVLVGLLLSLGCDSVHGNNGGGGWTDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDARWCLSSSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVAYRRVSCQKKGGIRFTINGHSYFNLVLITNVGGAGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLDGQRLSFKVTTGDGRTVISNGVVPGGWRFGQTFSGLQESLWVWAWGSAVCFEGNGSVKDGGSGRHLTPATLFLRYSLGHGSVWDRSVEMATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVAASSSSSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTQEAKEKELANGKLLQLNLQI 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 888640 892358 - CmaCh10G001970.1 Cma10g00197 301513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00197 555 PANTHER EXPANSIN 44 287 - -
Cma10g00197 555 Gene3D - 194 288 IPR036749 -
Cma10g00197 555 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Cma10g00197 555 PRINTS Expansin/Lol pI family signature 65 80 IPR007118 GO:0005576
Cma10g00197 555 PRINTS Expansin/Lol pI family signature 105 123 IPR007118 GO:0005576
Cma10g00197 555 PRINTS Expansin/Lol pI family signature 271 285 IPR007118 GO:0005576
Cma10g00197 555 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Cma10g00197 555 PRINTS Expansin/Lol pI family signature 179 195 IPR007118 GO:0005576
Cma10g00197 555 PANTHER EXPANSIN-A15 44 287 IPR002963 GO:0009664
Cma10g00197 555 SUPERFAMILY Chlorophyll a-b binding protein 391 548 - -
Cma10g00197 555 SUPERFAMILY Barwin-like endoglucanases 65 214 IPR036908 -
Cma10g00197 555 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 84 196 IPR007112 -
Cma10g00197 555 SMART dpbb_1 101 186 IPR007112 -
Cma10g00197 555 Gene3D - 54 192 IPR036908 -
Cma10g00197 555 Pfam Expansin C-terminal domain 197 274 IPR007117 -
Cma10g00197 555 Pfam Lytic transglycolase 101 186 IPR009009 -
Cma10g00197 555 PRINTS Expansin signature 96 110 IPR002963 GO:0009664
Cma10g00197 555 PRINTS Expansin signature 271 287 IPR002963 GO:0009664
Cma10g00197 555 PRINTS Expansin signature 242 263 IPR002963 GO:0009664
Cma10g00197 555 PRINTS Expansin signature 195 207 IPR002963 GO:0009664
Cma10g00197 555 PRINTS Expansin signature 123 134 IPR002963 GO:0009664
Cma10g00197 555 PRINTS Expansin signature 171 184 IPR002963 GO:0009664
Cma10g00197 555 PRINTS Expansin signature 135 145 IPR002963 GO:0009664
Cma10g00197 555 PRINTS Expansin signature 154 171 IPR002963 GO:0009664
Cma10g00197 555 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Cma10g00197 555 SUPERFAMILY PHL pollen allergen 193 284 IPR036749 -
Cma10g00197 555 Gene3D Chlorophyll a/b binding protein domain 401 550 - -
Cma10g00197 555 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 206 285 IPR007117 -
Cma10g00197 555 Pfam Chlorophyll A-B binding protein 401 548 IPR022796 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00197 Cma11g00138 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00197 Cma-Chr10:888640 Cma11g00139 Cma-Chr11:750299 2.25E-140 dispersed
Cma01g00793 Cma-Chr1:4282436 Cma10g00197 Cma-Chr10:888640 0 wgd
Cma10g00197 Cma-Chr10:888640 Cma11g00138 Cma-Chr11:744009 8.01E-156 wgd
Cma10g00197 Cma-Chr10:888640 Cma18g01138 Cma-Chr18:9207304 5.00E-67 wgd
Cma10g00197 Cma-Chr10:888640 Cma04g01668 Cma-Chr4:8389926 6.42E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00197 - K20628 csv:101222936 457.603