Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00200 ATGATCGTTCTCAACGGTGGAAAATCCAACTTGGCACTCTCTCTGTGCTCCCGAGTTGAGATCAAATTTCCACATTTTCAATTGCTCCTCCCCAAGTACATTTGGAGTTCAGATCCAAAAACACCCACTGATACAATACCCAATGGTAGCTATTTTTCCAAGGAACAAAGATTTCTGTCTCTTTTCAAGCAATGCTCCGCCGTGAAAGACTTGAATCAACTCCATGCCCGTACTATCCAGTCGGGTTTCGATCAGAATCTCTTCGTTCTTGGCAAACTCATTGAGTTTTGTGCGGTTTCGGCCCATGGCGACATGAATTACGCTGTTGCTGTTTTCAACCGAATCGAAAATCCAGATGGGTTTCTTTGGAACACAATGATAAGGGGATTTGGAAGAATTAGTAATCTGCCTAAGGCGTTTGAGTTCTACAAGCGAATGCTAGAGAAGGGAATCGCGGCAGACAATTTCACTTTTTCTTTCTTGCTAAAGATTTCTGGGCAGTTGGGGTCAATTATGTTGGCCAAGCAGTTACATGCCAATATTCTGAAACTTGGCCTCGATTCCCATGTGTATGTTAGGAACACGCTTATTCATATGTATGGCAGGTTAAAAGACGTCAAACTAGCACGCAACCTGTTTGATGAAATGCCCAAACCAGGTTTGGTAGCTTGGAATACAGTAATCGACTGTCATGTCTCTTGTGGGATGTACAACGAAGCACTTGCCTTGTTTCTTCAAATGTTGCAGAGTGGCGTAGAGCCTGACGAAGCCACACTGGTTGTGACGGTCTCAGCATGTTCTGCACTGGGTGCACTGGACTTTGGGAGGTGGGTTCATTCCCATGTGAAGCATAACGATAGAGGAAAGACTATTGCCGTTTTCAATTCATTGATCGACATGTACGCCAAGTGTGGAGCAGTTGAAGACGCCCGCGAGATGTTTAATGCAACAAGTGGCAAGAACATAGTAACATGGAACACAATGATCATGGGATTAGCTACACACGGCGATGTAGAGGATGCACTGACATTATTCTCAAACATGTTAGCAGAGAAGATTGTGACTCCTGATGGCGTGACATTCTTGGGAGTATTATGTGCTTGTAACCATGGAGGAAAGGTGGAGGAAGGGAGGAGATATTTTGATCTAATGACCAAACACTGCGATATCCAACCCACAGTTAAGCACTATGGATCAATGGTGGACATTCTGGGACGAGCTGGGTTTGTAGAAGAAGCTTATCAGCTGATACGGAGTATGCCAATGGAGTGTAATGCTGTAATATGGAGAACATTACTTGCAGCCTGTCGGATGCATGGAAATGTTAAGCTCGGGGAGAGAGTGAGGAGCCATGTTCTTGAGATAGAGCCAGATCATAGCAGTGATTATGTTCTTCTTGCAAATATATATGCAAGCTCTGGTCAATGGAATGAAATGATGAAGGTCAGAAAATCAATGCAACGAAAAGGAGTGCAGAAACCAGAGCCTGGTAATAGTTTTTTGGAGATTAATCCATGCAGGAAGTTGGAGATGGACACTGTCGAGAATTATAACAATGCTGAAAGAAACGAAAGTTATATCTGA 1584 43.62 MIVLNGGKSNLALSLCSRVEIKFPHFQLLLPKYIWSSDPKTPTDTIPNGSYFSKEQRFLSLFKQCSAVKDLNQLHARTIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFSFLLKISGQLGSIMLAKQLHANILKLGLDSHVYVRNTLIHMYGRLKDVKLARNLFDEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKHNDRGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTWNTMIMGLATHGDVEDALTLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCDIQPTVKHYGSMVDILGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMMKVRKSMQRKGVQKPEPGNSFLEINPCRKLEMDTVENYNNAERNESYI 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 898195 899778 - CmaCh10G002000.1 Cma10g00200 301516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00200 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Cma10g00200 527 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 46 505 - -
Cma10g00200 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Cma10g00200 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Cma10g00200 527 Pfam PPR repeat family 118 163 IPR002885 -
Cma10g00200 527 Pfam PPR repeat family 320 368 IPR002885 -
Cma10g00200 527 Pfam PPR repeat family 219 266 IPR002885 -
Cma10g00200 527 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 46 505 - -
Cma10g00200 527 Pfam PPR repeat 293 315 IPR002885 -
Cma10g00200 527 Pfam PPR repeat 397 421 IPR002885 -
Cma10g00200 527 Pfam PPR repeat 194 218 IPR002885 -
Cma10g00200 527 TIGRFAM PPR: pentatricopeptide repeat domain 222 256 IPR002885 -
Cma10g00200 527 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Cma10g00200 527 TIGRFAM PPR: pentatricopeptide repeat domain 359 393 IPR002885 -
Cma10g00200 527 TIGRFAM PPR: pentatricopeptide repeat domain 194 217 IPR002885 -
Cma10g00200 527 TIGRFAM PPR: pentatricopeptide repeat domain 122 154 IPR002885 -
Cma10g00200 527 Pfam E motif 439 501 IPR046848 -
Cma10g00200 527 Gene3D Tetratricopeptide repeat domain 350 501 IPR011990 GO:0005515
Cma10g00200 527 Gene3D Tetratricopeptide repeat domain 12 178 IPR011990 GO:0005515
Cma10g00200 527 Gene3D Tetratricopeptide repeat domain 282 349 IPR011990 GO:0005515
Cma10g00200 527 Gene3D Tetratricopeptide repeat domain 216 281 IPR011990 GO:0005515
Cma10g00200 527 SUPERFAMILY HCP-like 129 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00200 - - - mcha:111007228 888.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00200 Cma-Chr10:898195 Cma12g00333 Cma-Chr12:1695684 5.69E-119 dispersed
Cma10g00200 Cma-Chr10:898195 Cma14g00589 Cma-Chr14:2921332 1.72E-118 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g570 . . . . . . . . . . Cma10g00200 . Car10g00191 . . . . . . . . . . . Cla06g01583 . . . . . . Cone2ag0836 . . . . . . . . . . . . . . . . Cmo10g00218 . . . . . . . . . . . . . . . . . . . . . Lsi06g01455 Csa01g00245 Chy02g02488 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013538 0 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 0 1 1 2 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00200 Cma_Chr10 FPKM 0.760101 0.945219 1.053788 0.824217 3.044757 2.624213 2.542329 1.540091 1.540188 1.670453