Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00209 ATGGCGCTGTTCAGAAGGTTCTTTTACAGGAAGCCGCCGGATCGGCTTCTTGAAATCTCCGAGAGAGTCTATGTGTTTGATTGCTGCTTCTCCACGGAAGTGTTGGAAGAAGAAGAGTATAAGGTCTACTTGGATGGCATTGTAGCACAGTTGCAGGGCCACTTTCCCGATGCCTCTTTCATGGTTTTCAACTTCAGAGAAGGTGATAGGCGTAGTCAAATTTCTGATGTACTGACTCAGTATGACATGACAGTTATGGACTATCCTCGGCAATATGAGGGGTGTCCTTTACTGTCATTGGAGATGGTTCACCACTTCCTTCGATCTAGTGAAAGTTGGTTGTCGGTGGAGGGTCAACAGAATGTTCTATTGATGCACTGTGAAAGAGGAGGATGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTCTTGTATAGAAAACAATACAGTGGGGAGCAGAAGACCCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTCCTTTAAATCCTCAGCCTTCCCATCTGAGATATCTTCAATACATTTCCAGGAGAAATTTAGGTTCCGATTGGCCTCCATCGGATACACCTCTAGTTTTGGATTGTTTAATACTTAGAGTTCTACCTCTTTTTGACGGGGGAAAGGGATGTAGGCCTGTTGTGCGTGTTTATGGTCAAGACCCCTCAACACCAGCAAATAGAACTTCAAGGCTTTTATTTTCAACATCAATCAAAAGAAAACATATCCGCAACTACCTACAGGCAGAGTGTATGCTGGTGAAAATTGATATTCATTGCCATGTCCAAGGAGACGTAGTTCTTGAATGCATCCATTTGGATGAAGATCTAGTGCATGAGGAGATGATGTTTAGAGTTATGTTTCACACAGCATTCGTAAGATCAAACATTATGATGCTGAACCGTGATGAAGTTGATGTTTTATGGGATGCAAGGGACCAATTTCCTAAGGACTTCAGAGTTGAGGCACTCTTTTTGGATGCTGATGCTGTTGTCCCCAGTCTCACCACAGCCTTAGACGATGAAGATGGTAATGAAACTGGAGCTGCTTCTCCTGAAGAATTTTTTGAGGTTGAAGAGATCTTCAGTAATACAATGGATGGGCAGGAAGCAAAGGGGTCCAATGATCCTCAAGTGGTCAAGCATGTAAACCGTAACGAAGATTTGAAGGAGGACTTGGATCCTCATGCATTCCAAGATTGTGCATCTGACGATGGAAATCATCTTAGGCATGATAAGAAACCAGATTTTGATGCAGTGAAGGACATTACTGTGGATGATGTGAGGTACAAACTGGATGAAAATATATATCCTGATCTTAATGTAGTTAAGGACATTGGTGTAGATGATGGGGATATGAATTCAAATTCCTTCATGGTTGCTGCTAATGTCCTGACCCATGTGGAAGCCCAGGGTTTGGTGGATGATGCATACGAGAAATTTGAAGATATAGAAGAAAAGGATGATGGTAGATATCCTACAACTGAGAAATTGGAAAACAAGGCTCTGCAGAAAAAGTTGAGTGCTGATGGTTCAGAATCTGAAAAAGTGCAAATACCGATTTCCAAGAAACAGCCTATTTCAAGTGCAAAACCGACCACTGATATGGGTTTAACTGAACAGAAAGTCGAACAACAAGAGGCTCAAGGGTTTTCTGGAAAACAAGCAAGGCCAAATATAGTTTCTAGGTGGATCCCACCTAACAAAGGCTCCTATGTGAATTCTGTGCATGTTTCCTATCCGCCTTCAAGATATAACAGTGCCCCTGCTGCCACTCTCAGTTCCCTAGTTGCTACAGATGTGAATAATGACGTGGATTCTATAAGGCCTTCATACTCTGCACTTGGGGAACTCGTGCTTGGCCCATCGTCTCCAGTTGAGTCGATAGAGGAGACATATTCTTCCTCTGAAACTTTAAAACCATCACACTGCGATCCACAACTTGAAGTACCTCCTCCCCCACTGCCCACAAAGCCTCCATCTCCATATTTTCCATCACCCCCCCGAGCAAATGCAATACCTCCTCCACCANCTCCACCACCTACTTCATTTCATCATATTGAGTCAACGTACTCTCCTCCACCACTTTCTGTGTCTTCAGCACCACCACCCCTAGTTAGCTCATCAAACACAGTGACTACCCCTTCCCCTCCCCCTCCCCCTCCCCCTCCATTCAGTAGGCAGAATAGTCTTTTTCCCTATTCTTCTACACAACCATCATGGGAGCAAATATATTCTTCCGTTTCTACTGCAATTGTGGCTGGTTCTATACCGCCTCCACCTCCACCACCCCCACCACCACCTCTCTCCTCTCTCTCTCTGGTTAGGCCATATACATCAAAGAATATTGTAAGTACTCCTCCAGCACCTGTTTTATCCCCTCCCCCACCTTCTGTGATGCATGAAACACTTGCTTCACCACCTCCACCATCCGCACCTGCTTCATATGGTGATAAAGCATCACCAACTCTATCTTCTCCAGCACCCTCCCCTATTACTTCAGTTCATGGTGCTTCCCCGCCCCCGCCCCCAACACCTCCACTTATTACTTCAGTTCATGGTGCTTCTCCACCCCCACCCCCACCCCCACCCTCACCCTCACATATTAGTTCAGTTCATGGTGCTTCCTCGCCCCCGCCTTTAGCACCTCAAACAACCCCACCTATTACTTCAGTGCATCGTCCACCCCCGCCCCCGCCCCCGCCCCCGCCCCCATTAATGTATGAGGCATTTCCTTCACCATCTCTAATGAAAAGAACACCACCTCCACCACCTCCACCCCCACCCATGCATGGTGCATCTCCAACACTATCTTTATTAGGACCACCACCTCCTTCGATGCATGGGGCTTTTCCACCATTGCCTCCTCCACCACCTTTGCNTCCACCAATTCATGGGACTCCGTCACCATCACCACCCCCACCCCCACCGCCTCCACCAATGCACGGGGCTCCTCCCCCCCCACCACCTCCTCCACCAATGCATGGGGCTCCTCCACCACCACCACCTCCACCACCAATGCACGGGGCTCCTCCACCAATGCACAGGGCTCCTCCACCACCACCACCTCCTCCACCAATGCACAGGGCTCCTCCACCACCACCACCTCCTCCACCAATGCACGGGGCTCCTCCACCACCACCACCTCCTCCACCAATGCACGGGGCTCCTCCTCCACCACCACCACCACCTCCACCAATGCATGGGGCTCCTCCACCCCCGCCACCACCTCCTCCTATGTATGGGGCTCCTGCCCCACCACCACCTCCTCCTATGTATGGGGCCCCTCCCCCGCCGCCGCCACCACCCGGTGGAGGGAGAGCGCCTCCCCCACCGCCGCCACCACCAGGTGGAGGGAGAGCCCCTCCCCCGCCTCCGCCACCACCCGGTGGTGGGAGAGCTCCTCCCCCGCCTCCGCCACCACCCGGTGGTGGGAGAGCCCCTCCCCCGCCTCCGCCACCACCCGGTGGTGGGAGAGCCCCTCCCCCGCCTCCGCCACCACCCGGTGGTGGGAGAGCCCCACCCCCGCCTCCACCACCACCCGGTGGTGGGAGAGCCCCACCCCCGCCTCCACCACCCGGTGCCCCACCACCGCCTCCCCCACCCGGTGGTGGGAGAGCCCCGCCACCACCTCCCCCACCGGGTGGTGGTGGAGCCCCAGCACCCCCTCCCCCTCCGGGAGGTCGTGGAGCCCCACCCCCTCCTAGACCTCCTGGTGGTGGTGGACCTCCTCCACCTCCACCACTAGGTGCAAGAGGAGCAAACGCTCCACCTGACCCTAGAGGTTTGTCCTCTGGAAGAGGGCGTGGGCTATCACGCTCAACAGCTACAGCACCTCGAAGGTCCTCCTTAAAGCCCCTACATTGGAGCAAAGTAACGAGAGTTCTGCAAGGGAGCCTGTGGGAAGAACTGCAGAGATATGGAGAACCTCAAATTGCACCAGAGTTTGATGTGTCTGAGTTAGAGAGCCTCTTTTCTGCAAATGTTCCCAAACCTGCTGATGGAGGTAAATCTGGAGGGCGAAGGAAGTCTGTTGGATCCAAAAGTGACAAAGTTCACCTGATTGACCTCAGAAGAGCTAATAACACTGAAATTATGCTCACCAAAGTAAAGATGCCTCTTCCTGATATGATGGCTGCAGTGCTAGCTATGGACGAGTCAGTATTAGACGTTGATCAGGTGGAAAATCTCATAAAATTTTGTCCTACGAAGGAGGAGATGGAACTTCTTAAGGGATACACTGGTGATAAGGATAACCTTGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTAGAGTCAAAGTTGAGAGTGTTTTCCTTTAAGATTCAGTTCGGTTCTCAGATATCAGAATTTAAGAAGAGTTTAAATACTGTCAACTCTGCATGTGTCGAGGTTAGGAATTCTGCCAAACTGAAGGAGATTATGAAGAAAATTCTTTATCTGGGGAATACACTGAATCAAGGAACGGCAAGGGGTTCTGCAGTTGGCTTCAAGTTGGACAGTCTTTTAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACACTCATGCATTATCTTTGCAAGGTCCTCGCTTCAAAGACGCCAGCTCTTCTTAATTTTCATTTGGACCTGGGTAGCCTAGAGGCAGCAACCAAGATACAATTAAAGTCTTTAGCAGAAGAAATGCAAGCTATAATTAAGGGGTTAGAAAAGGTCAGGCAGGAGCTTGTTGCTTCTGAAAGTGATGGTCCAGTTTCTGAAATTTTTCGCAAGACGCTGAAAGAATTTATTGCTATCGCTGAGACTGAGGTGGCATCAGTGACAAATCTATACTCTACTGTGGGTAGAAATGCAGATGCACTTGCACTATATTTTGGTGAGGATCCAGCTCGTTGTCCATTTGAGCAGGTTACAGTGACATTATTGAACTTTATGAGATTATTTCGGAAAGCCCACGAAGAAAACTGCAAACAGGCCGAACTGGAAAGGAAAAAGGCGGAGAAAGAAGCTGAAATGGAGAAAGCCAAAGGAATTAGCCTTACGAAGAAGAGTGTGAAATAG 5094 49.65 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTEVLEEEEYKVYLDGIVAQLQGHFPDASFMVFNFREGDRRSQISDVLTQYDMTVMDYPRQYEGCPLLSLEMVHHFLRSSESWLSVEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSPLNPQPSHLRYLQYISRRNLGSDWPPSDTPLVLDCLILRVLPLFDGGKGCRPVVRVYGQDPSTPANRTSRLLFSTSIKRKHIRNYLQAECMLVKIDIHCHVQGDVVLECIHLDEDLVHEEMMFRVMFHTAFVRSNIMMLNRDEVDVLWDARDQFPKDFRVEALFLDADAVVPSLTTALDDEDGNETGAASPEEFFEVEEIFSNTMDGQEAKGSNDPQVVKHVNRNEDLKEDLDPHAFQDCASDDGNHLRHDKKPDFDAVKDITVDDVRYKLDENIYPDLNVVKDIGVDDGDMNSNSFMVAANVLTHVEAQGLVDDAYEKFEDIEEKDDGRYPTTEKLENKALQKKLSADGSESEKVQIPISKKQPISSAKPTTDMGLTEQKVEQQEAQGFSGKQARPNIVSRWIPPNKGSYVNSVHVSYPPSRYNSAPAATLSSLVATDVNNDVDSIRPSYSALGELVLGPSSPVESIEETYSSSETLKPSHCDPQLEVPPPPLPTKPPSPYFPSPPRANAIPPPPXPPPTSFHHIESTYSPPPLSVSSAPPPLVSSSNTVTTPSPPPPPPPPFSRQNSLFPYSSTQPSWEQIYSSVSTAIVAGSIPPPPPPPPPPPLSSLSLVRPYTSKNIVSTPPAPVLSPPPPSVMHETLASPPPPSAPASYGDKASPTLSSPAPSPITSVHGASPPPPPTPPLITSVHGASPPPPPPPPSPSHISSVHGASSPPPLAPQTTPPITSVHRPPPPPPPPPPPLMYEAFPSPSLMKRTPPPPPPPPPMHGASPTLSLLGPPPPSMHGAFPPLPPPPPLXPPIHGTPSPSPPPPPPPPPMHGAPPPPPPPPPMHGAPPPPPPPPPMHGAPPPMHRAPPPPPPPPPMHRAPPPPPPPPPMHGAPPPPPPPPPMHGAPPPPPPPPPPMHGAPPPPPPPPPMYGAPAPPPPPPMYGAPPPPPPPPGGGRAPPPPPPPPGGGRAPPPPPPPPGGGRAPPPPPPPPGGGRAPPPPPPPPGGGRAPPPPPPPPGGGRAPPPPPPPPGGGRAPPPPPPPGAPPPPPPPGGGRAPPPPPPPGGGGAPAPPPPPGGRGAPPPPRPPGGGGPPPPPPLGARGANAPPDPRGLSSGRGRGLSRSTATAPRRSSLKPLHWSKVTRVLQGSLWEELQRYGEPQIAPEFDVSELESLFSANVPKPADGGKSGGRRKSVGSKSDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKDNLGKCEQYFLELMKVPRVESKLRVFSFKIQFGSQISEFKKSLNTVNSACVEVRNSAKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLASKTPALLNFHLDLGSLEAATKIQLKSLAEEMQAIIKGLEKVRQELVASESDGPVSEIFRKTLKEFIAIAETEVASVTNLYSTVGRNADALALYFGEDPARCPFEQVTVTLLNFMRLFRKAHEENCKQAELERKKAEKEAEMEKAKGISLTKKSVK 1697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 925548 941379 - CmaCh10G002090.1 Cma10g00209 301525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00209 1697 PANTHER FORMIN-J 1 1068 - -
Cma10g00209 1697 PANTHER FORMIN-J 1084 1690 - -
Cma10g00209 1697 MobiDBLite consensus disorder prediction 638 653 - -
Cma10g00209 1697 MobiDBLite consensus disorder prediction 740 764 - -
Cma10g00209 1697 Gene3D - 205 336 - -
Cma10g00209 1697 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1285 1685 IPR015425 -
Cma10g00209 1697 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cma10g00209 1697 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Cma10g00209 1697 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Cma10g00209 1697 MobiDBLite consensus disorder prediction 891 1265 - -
Cma10g00209 1697 SMART PTEN_C2_2 198 338 IPR014020 -
Cma10g00209 1697 MobiDBLite consensus disorder prediction 799 826 - -
Cma10g00209 1697 MobiDBLite consensus disorder prediction 633 1295 - -
Cma10g00209 1697 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Cma10g00209 1697 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Cma10g00209 1697 Gene3D Formin, FH2 domain 1283 1671 IPR042201 -
Cma10g00209 1697 Coils Coil 1660 1689 - -
Cma10g00209 1697 MobiDBLite consensus disorder prediction 845 879 - -
Cma10g00209 1697 Coils Coil 1566 1586 - -
Cma10g00209 1697 MobiDBLite consensus disorder prediction 657 694 - -
Cma10g00209 1697 MobiDBLite consensus disorder prediction 499 523 - -
Cma10g00209 1697 MobiDBLite consensus disorder prediction 766 783 - -
Cma10g00209 1697 Pfam Formin Homology 2 Domain 1290 1659 IPR015425 -
Cma10g00209 1697 MobiDBLite consensus disorder prediction 829 844 - -
Cma10g00209 1697 SMART it6_source 658 1695 IPR015425 -
Cma10g00209 1697 MobiDBLite consensus disorder prediction 784 798 - -
Cma10g00209 1697 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1244 1679 - -
Cma10g00209 1697 MobiDBLite consensus disorder prediction 499 524 - -
Cma10g00209 1697 MobiDBLite consensus disorder prediction 1338 1359 - -
Cma10g00209 1697 PRINTS Kv3.3 voltage-gated K+ channel signature 722 735 IPR005404 GO:0005249|GO:0006813|GO:0016021
Cma10g00209 1697 PRINTS Kv3.3 voltage-gated K+ channel signature 981 997 IPR005404 GO:0005249|GO:0006813|GO:0016021
Cma10g00209 1697 MobiDBLite consensus disorder prediction 724 739 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00209 Cma13g01093 CCT
Cma10g00209 Cma11g00123 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00412 Cma-Chr9:1750408 Cma10g00209 Cma-Chr10:925548 9.60E-178 dispersed
Cma10g00209 Cma-Chr10:925548 Cma13g01093 Cma-Chr13:8230983 0 dispersed
Cma01g00804 Cma-Chr1:4326581 Cma10g00209 Cma-Chr10:925548 0 wgd
Cma10g00209 Cma-Chr10:925548 Cma11g00123 Cma-Chr11:655413 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00209 - - cmos:111429670 1595.48