Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00211 ATGAAGGAGAAAGACACTCATAATCATTCATGGCGTCTTCCAATTATCATTTTCTTCATCTTAATCACAGGTACAATTGTCGAGGGACAAGAATTGCAGAGAGACAGAGAAGTTTTGTTACAGTTGAAATTCTTTTTAGAAAAACACAATCCCATTAAACGAGGAAAATATTCGTTTTGGAATTTGCAGAACTCGCCTTGTTCTTGGTCTGGAATATCCTGCAATCAAATCAATTCCCAAGTGACCGGAATTGACCTTTCAAATGAAGATATTACCGGCACAATTTTTCATAATTTCTCTGCCTTTCCGGCGCTAACGGACCTCGACCTCTCTAGAAACACTCTCTCTGGGCTAATTCCCGGCGACTTGAACAACTGCAGAAATCTCCGGCTGCTGAATTTGTCGCACAACATCATCGATGACAAGTTGAACTTGTCGGGGTTGGTCAATATCGAGACTCTGGATTTGTCGGTCAACCGGATTTGGGGAGACATACGGTTGAATTTTCCGGGCATTTGCAGAAATTTGATTTTCTTTAATGTTTCCGGTAATAATTTCACTGGTCGGACGGATGACTGTTTTGACGAATGCCGGAATTTGCAGCATGTGGATTTGAGCTCCAACAGATTCAATGGTGGATTGTGGGGTGGGTTGGCGAGGACTCGTTTTTTCTCAGCGTCGGAGAATGAACTTTCCGGCGAGCTATCGCCGGCGATATTTACTGGGGTTTGTAATTTGGAGGTGTTGGACCTGTCAGAGAATAAATTTTCCGGCGGAGTTCCAGTGGAGGTTTCTAATTGTGGGAATTTGTCTTCTTTGAATCTTTGGGGGAACCAATTTTCCGGGAAAATTCCGGTGGAAATTGGAAGAATTTCGGGTTTGCAGAATTTATATCTGGGAAAGAACAATTTTTCCCGGGAAATTCCTGAATCCCTCCTAAGTTTGAACAACTTGGTGTTCCTCGATTTGAGCAAGAACAATTTCGGAGGGGACATTCAAGAAATCTTCGGTAGGTTTACACAGGTGAGATTCCTTGTTCTTCATGGGAATTCTTACACCGGAGGGATTTACTCTTCTGGGATTCTTAAGCTCCCAAGCGTTGCTCGTTTGGATTTGAGTTTCAACAACTTTTCAGGTTCATTGCCTGTAGAAATCTCTGAAATGAAGAGCTTGGAGTTCTTGATTCTTGCATATAATAAGTTCAATGGAGTGATTCCATCAGAATATGGGAACTTGCTGAATCTTCAAGCTCTTGATCTCTCATTCAACAACTTAAATGGATCAATCCCAAGTAGCTTTGGGAAATTGACTTCACTTTTGTGGCTAATGCTGGCAAACAACTCCTTGACTGGTGAAATTCCCAGGGAGCTTGGTAATTGTTCTAGCTTGTTATGGCTGAATCTTGCGAACAATAAGCTACATGGGCGCATCCCGTCCGAGCTTTCGAACATTGGAAAGAACGCCACGGCGACATTCGAAATGAATCGACAAACCGAAAAGTTCATCGCTGGATCAGGGGAGTGCTTGGCTATGAAGAGATGGATACCAGCAGACTACCCTCCTTTCAGATTTGTTTACACAATTCTTACAAGGAAGAGTTGTAGAAGCATTTGGGATAGATTGTTGAAAGGGTATGGCCTTTTCCCATTTTGCAGCAGAATTAGAACACTGCAAATCTCTGGTTATGTTCAGCTAACTGGGAATCAGTTCAGTGGTGAGATACCAAATGAGATTGGAATGATGAAGAACTTCAGTATGTTGCATTTGAGTTGCAACAATTTTAGTGGGAAGCTCCCTCCACAGTTGGGGAATCTGCCACTGGTTGTTCTAAACGTCTCGGAAAATCGTTTTTCGGGCGAGATCCCGACCGAGATTGGAGGCCTGAAGTGCTTGCAGAACCTTGATTTATCATACAACAACTTCTCTGGCATGTTCCCTAGAAGTTTCTTGAACTTGAATGAGCTTAACAAATTCAACATTTCATATAATCCTCTCATAACTGGTGAAGTCATTCCAAGTGGGCAATTCTCAACGTTTGACAAGGACTCATATCTTGGCAATCCTCTTTTGCGCCTTCCATCGTTCTTCAACATAACACCGCCGAAGTCACCTGCCAACCCAAGAATGGCAGGATCATCCAAAAGGAACTCAACGCTAATTGGGATGTTGGCTTCCTTATCATTGATCCTTGCTTTCTTAATATTTGGTGCATTTTCTCTTATAGTGTTCTCAATGGTGAGAAACTCAGATGAATCACGAGGACATCTCTTGGATGATATAAAATATATGAAAGACTTCGGCTCGAGTTCTCCCAGCTCGTCGCCGTGGTTTTCGGATTCGGTAACGGTGATTCGACTTGACAAAATGGTTTTTACGTATGCTGATATTCTAAAAGCCACAGGAAACTTTTCAGAGGATAGAGTGATTGGTAAAGGAGGATATGGAACAGTTTACAGAGGAATGTTACCTGATGGGAGGCAAGTGGCAGTGAAGAAGCTTCAGAGAGAAGGGAATGATGGTGAAAGAGAGTTCCAAGCTGAAATGAAGATTCTTACTGGAAATGGCTTCAACTGGCCGCACCCGAACCTTGTTCAACTTTACGGATGGTGTCTTGATGGGTCGGAGAAGATTTTGGTGTATGAGTACATGGAAGGAGGGAGCTTGGAAGATCTCATAGTAGACAGACTTAGACTAAACTGGCAGCGTCGCATCGATCTTGCGATCGATGTGGCACGAGCATTGGTATTTCTGCATCACGAGTGCTTTCCTTCTATTGTGCATCGTGATGTGAAGGCAAGTAATGTTCTGCTTGATAAAGACGGTCGAGGACGGGTGACAGACTTCGGGTTGGCTAGAATTATGGATGTAGGAGACAGCCATGTGAGTACCATGGTGGCTGGAACCATTGGTTACGTAGCACCCGAGTATGGACAGACATGGAAAGCTACGACAAAGGGCGACGTGTATAGTTTTGGAGTTTTGGCAATGGAATTTGCTACGGCAAGACGAGCACTGGATGGAGGGGAAGAGTGTCTAGTTGAATGGGCTAAAAGGGTGATGGGAAATGGGAGACCAGGGTTGAGTAGAGCAGTGATACCAGTGGCAGTTTTGGGGTCGGGGCTCGTCGACGGGGCGGACGAGATGTGCGAGCTGCTGAAGATTGGGGTGAGGTGCACACATGAAGCACCAGGGGCAAGACCGAACATGAAGGAAGTGCTAGCTATGTTGATCAATATCATAGGGTTAAGAGGGGGAGATGAATTCAGCCAGATGTTCTCCCCTACTCCATGCATTGATCAAGATTTTGATTGA 3312 44.08 MKEKDTHNHSWRLPIIIFFILITGTIVEGQELQRDREVLLQLKFFLEKHNPIKRGKYSFWNLQNSPCSWSGISCNQINSQVTGIDLSNEDITGTIFHNFSAFPALTDLDLSRNTLSGLIPGDLNNCRNLRLLNLSHNIIDDKLNLSGLVNIETLDLSVNRIWGDIRLNFPGICRNLIFFNVSGNNFTGRTDDCFDECRNLQHVDLSSNRFNGGLWGGLARTRFFSASENELSGELSPAIFTGVCNLEVLDLSENKFSGGVPVEVSNCGNLSSLNLWGNQFSGKIPVEIGRISGLQNLYLGKNNFSREIPESLLSLNNLVFLDLSKNNFGGDIQEIFGRFTQVRFLVLHGNSYTGGIYSSGILKLPSVARLDLSFNNFSGSLPVEISEMKSLEFLILAYNKFNGVIPSEYGNLLNLQALDLSFNNLNGSIPSSFGKLTSLLWLMLANNSLTGEIPRELGNCSSLLWLNLANNKLHGRIPSELSNIGKNATATFEMNRQTEKFIAGSGECLAMKRWIPADYPPFRFVYTILTRKSCRSIWDRLLKGYGLFPFCSRIRTLQISGYVQLTGNQFSGEIPNEIGMMKNFSMLHLSCNNFSGKLPPQLGNLPLVVLNVSENRFSGEIPTEIGGLKCLQNLDLSYNNFSGMFPRSFLNLNELNKFNISYNPLITGEVIPSGQFSTFDKDSYLGNPLLRLPSFFNITPPKSPANPRMAGSSKRNSTLIGMLASLSLILAFLIFGAFSLIVFSMVRNSDESRGHLLDDIKYMKDFGSSSPSSSPWFSDSVTVIRLDKMVFTYADILKATGNFSEDRVIGKGGYGTVYRGMLPDGRQVAVKKLQREGNDGEREFQAEMKILTGNGFNWPHPNLVQLYGWCLDGSEKILVYEYMEGGSLEDLIVDRLRLNWQRRIDLAIDVARALVFLHHECFPSIVHRDVKASNVLLDKDGRGRVTDFGLARIMDVGDSHVSTMVAGTIGYVAPEYGQTWKATTKGDVYSFGVLAMEFATARRALDGGEECLVEWAKRVMGNGRPGLSRAVIPVAVLGSGLVDGADEMCELLKIGVRCTHEAPGARPNMKEVLAMLINIIGLRGGDEFSQMFSPTPCIDQDFD 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 950082 954382 + CmaCh10G002110.1 Cma10g00211 301527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00211 1103 Pfam Leucine rich repeat 414 473 IPR001611 GO:0005515
Cma10g00211 1103 Pfam Leucine rich repeat 607 665 IPR001611 GO:0005515
Cma10g00211 1103 Pfam Leucine rich repeat 81 137 IPR001611 GO:0005515
Cma10g00211 1103 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 15 1086 - -
Cma10g00211 1103 ProSiteProfiles Protein kinase domain profile. 803 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00211 1103 SMART serkin_6 803 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00211 1103 ProSitePatterns Serine/Threonine protein kinases active-site signature. 925 937 IPR008271 GO:0004672|GO:0006468
Cma10g00211 1103 Gene3D Ribonuclease Inhibitor 360 510 IPR032675 -
Cma10g00211 1103 Gene3D Ribonuclease Inhibitor 215 359 IPR032675 -
Cma10g00211 1103 SMART LRR_typ_2 412 435 IPR003591 -
Cma10g00211 1103 SMART LRR_typ_2 102 125 IPR003591 -
Cma10g00211 1103 SMART LRR_typ_2 243 267 IPR003591 -
Cma10g00211 1103 SMART LRR_typ_2 291 315 IPR003591 -
Cma10g00211 1103 SMART LRR_typ_2 364 388 IPR003591 -
Cma10g00211 1103 SMART LRR_typ_2 436 460 IPR003591 -
Cma10g00211 1103 SMART LRR_typ_2 628 651 IPR003591 -
Cma10g00211 1103 Pfam Protein kinase domain 804 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00211 1103 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
Cma10g00211 1103 Gene3D Phosphorylase Kinase; domain 1 772 882 - -
Cma10g00211 1103 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 15 1086 - -
Cma10g00211 1103 Gene3D Ribonuclease Inhibitor 546 700 IPR032675 -
Cma10g00211 1103 ProSiteProfiles Leucine-rich repeat profile. 128 149 IPR001611 GO:0005515
Cma10g00211 1103 SUPERFAMILY Protein kinase-like (PK-like) 783 1076 IPR011009 -
Cma10g00211 1103 SUPERFAMILY L domain-like 562 672 - -
Cma10g00211 1103 Gene3D Ribonuclease Inhibitor 31 214 IPR032675 -
Cma10g00211 1103 ProSitePatterns Protein kinases ATP-binding region signature. 809 832 IPR017441 GO:0005524
Cma10g00211 1103 CDD STKc_IRAK 809 1079 - -
Cma10g00211 1103 Gene3D Transferase(Phosphotransferase) domain 1 883 1083 - -
Cma10g00211 1103 SUPERFAMILY RNI-like 107 486 - -
Cma10g00211 1103 PRINTS Leucine-rich repeat signature 105 118 - -
Cma10g00211 1103 PRINTS Leucine-rich repeat signature 412 425 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00211 - - - cmax:111484984 2183.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00211 Cma-Chr10:950082 Cma03g01053 Cma-Chr3:7263570 1.14E-148 dispersed
Cma10g00211 Cma-Chr10:950082 Cma04g02153 Cma-Chr4:15068257 6.65E-154 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g601 . . . Bda15g00614 Bpe12g00532 . . . . . Cma10g00211 . Car10g00198 . . . . Bhi02g00285 . . . . . . Cla06g01566 . . . . . . Cone2ag0823 . Cone13ag0052 . . . . . . . . . . . . . . . . . . . . . Cpe18g00778 . . . . . . . . . . . . . . Lsi06g01441 Csa01g00264 Chy02g02469 Cme02g01857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007471 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 2 2 1 2 3 2 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68825 PF00069 Pkinase 2.40E-42 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00211 Cma_Chr10 FPKM 6.773608 7.195982 4.177922 4.982946 2.052477 1.632342 2.139066 6.333816 5.939536 6.870989