Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00213 ATGGAGAATCGTTCTTACGAACCTGAGAAAACCGCCAAAGACGTCTCACTGCAGGAACTCAGAGACATGCTCGAAGAGTTCGCTCGAGTACGAGGATGGGAACAATACCACAGCCCTAGAAACCTGCTCCTAGCACTTGTTGGTGAGGTCGGAGAGCTATCGGAGATATTCCAGTGGAAGGGAGAGGTGGAGAGGGGGCTGCCAAACTGGAGCGCGGCGGAGAGAGAGCATTTGGAAGAAGAGGTGTCTGATGTGTTACTCTATTTGGTGCGTCTCGCCGATGTGTGTGGCCTTGATTTGGGCCATGCCGCTCTCTCAAAGCTCGTCAAAAATGCCAACAAGTACCCTGTCGCCGCTTTCGCGCGCGCGCTGCCATGA 378 54.23 MENRSYEPEKTAKDVSLQELRDMLEEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQWKGEVERGLPNWSAAEREHLEEEVSDVLLYLVRLADVCGLDLGHAALSKLVKNANKYPVAAFARALP 125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 958152 958893 + CmaCh10G002130.1 Cma10g00213 301529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00213 125 Gene3D - 3 111 - -
Cma10g00213 125 Pfam MazG-like family 49 118 IPR025984 GO:0009143|GO:0047429
Cma10g00213 125 PANTHER - 1 119 - -
Cma10g00213 125 SUPERFAMILY all-alpha NTP pyrophosphatases 15 119 - -
Cma10g00213 125 PIRSF UCP029826_pph 7 123 IPR025984 GO:0009143|GO:0047429
Cma10g00213 125 CDD NTP-PPase_RS21-C6_like 21 111 IPR025984 GO:0009143|GO:0047429
Cma10g00213 125 PANTHER DCTP PYROPHOSPHATASE 1 1 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00213 K16904 DCTPP1; dCTP diphosphatase [EC:3.6.1.12] - csv:101204836 240.35
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00213 Cma11g00120 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00213 Cma-Chr10:958152 Cma14g01463 Cma-Chr14:11134472 2.38E-52 dispersed
Cma01g00807 Cma-Chr1:4349925 Cma10g00213 Cma-Chr10:958152 2.26E-61 wgd
Cma10g00213 Cma-Chr10:958152 Cma11g00120 Cma-Chr11:644678 1.37E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g605 Blo04g00783 . . . . . . . . . Cma10g00213 Cma11g00120 Car10g00199 . Sed08g0273 . . Bhi02g00098 Tan09g2046 Cmetu02g0607 . . . . Cla06g01565 Cam06g1729 Cec06g1790 Cco06g1790 Clacu06g1697 Cmu06g1643 Cre06g2454 . . Cone13ag0051 Cone19ag0056 Lsi02g00094 . . . . . . Bda14g00864 . Bpe15g00591 . . Sed08g2093 Cmo10g00229 Cmo11g00192 . . . . . Cpe18g00776 Bhi08g01132 Tan05g2414 . Lac10g0123 Hepe07g2487 . . . . . . . . . Lsi06g01440 Csa01g00265 Chy02g02468 Cme02g01855
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003712 1 2 1 0 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 1 3 2 2 2 2 1 2 3 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00213 Cma_Chr10 FPKM 3.314815 2.52352 8.877892 9.264707 0.534659 1.514736 1.299883 0.0 0.0 0.0