Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00222 ATGTTCCATCAGCAGCAGCACCCTCCTCCTCCTCCTCCTCCTTCCTCTTCTTCTTCTTCTTCCGTGCCTTTCTATTTCCCTCCTCAGCCTCACATTGTGAATGGTAATCCTTCTTCTTTCGCTCATTTTCCTCAGCCTGTTTTACCCCCCGGAGTCGCTTCCGAGCCGGTCCTGCACCCTCCCGGCACCGAACCTTATTCCAATTCCGCCATATTAACCTCGACCTATGTTGGATTGGAGGGCCAACCGCAATTTTATGCTGACCCAACTGTTGCTTCTCATAATTGGGTCGTTCCGCAGTCTGACCCCGCTGGATTTGCACTCATATCTTTGCTTGAGAATCAGATAGCTTCCACGAGTTCTAATTCTTTACTGGAAGGCAATTGGGCAACTCAATCCTTGGCACACAACGCAACTAGGACGAAACATGTGAAATCCAAGTTCACCCAGCCTGTGCGATGTGAAGTTTGCAAAATTAACTGCAACAGTAAAGATGTTTTTGATAAACATGTAATGGGGAAGAAACATAAGAAGAATTTGGAAGCACAAAACAGTTCCTTGACGGGAAGTACTTCTTCTGATAGGAACATATATATGCTAAACCAAACGGGCAGTGTCAGTGGTCAAGTGGCACAGGGGGCTCCGGATGTGCCTGCTGCTATTAAAGGTCTAAATACAAAGAAGCGAAAACTTACAGATAGCAGTACGAAAGCTGATTCTGCGAGGGTTTGTACTGTATGCAACGTTGTTTGCAATAGTCAAGAGGTTTTTGATAAACATCTGAGTGGGAAAAAGCACGCAGCTCAGGCTGTCTTAACATCCCAAAATCCCTATGCTGCTGCAATCCGGTCTCAATATGATGGCAGCTCGAAGAAGAAACCGAAAAAGAATAAGGTCATTCAGTTTGCCTGGTGTGAGGTTTGCAAGATCAGCTGTAACAGCAATGAAATCTATGCCAAGCACCTATCAGGAAAGAAACACTTGAAGAACAAAGAAAAAGCAGAAAAGGGATGTAGTGATGCAGGTGCTTCGAACGCTCTGCAATCGGCAACAGAGCCAATTATCGGGCCAACGGAAAACCCATCTACCAACATCCCAAGTAGTGATGATATACAGAAAACACAGAAGAGTTCAGCAGCTCAAACACCAGAAGATCTAGAGACGAAGAAACGCAAGATTGTGGAAAGTGGTACGGCTGCAGATTCTGTTAGAACCTGCAGCATTTGCAATGTGGTCTGCAATAGCCAGACGGTGTTTGATTCTCATCTGTCTGGCCAGAAACATGCTTCCATGATGAAGAAACAAGCTGTTTCTGGAATGTCAATGCTAGTTCCTCCTTTAGTAACTGCATTTCCTAACTAG 1362 45.23 MFHQQQHPPPPPPPSSSSSSSVPFYFPPQPHIVNGNPSSFAHFPQPVLPPGVASEPVLHPPGTEPYSNSAILTSTYVGLEGQPQFYADPTVASHNWVVPQSDPAGFALISLLENQIASTSSNSLLEGNWATQSLAHNATRTKHVKSKFTQPVRCEVCKINCNSKDVFDKHVMGKKHKKNLEAQNSSLTGSTSSDRNIYMLNQTGSVSGQVAQGAPDVPAAIKGLNTKKRKLTDSSTKADSARVCTVCNVVCNSQEVFDKHLSGKKHAAQAVLTSQNPYAAAIRSQYDGSSKKKPKKNKVIQFAWCEVCKISCNSNEIYAKHLSGKKHLKNKEKAEKGCSDAGASNALQSATEPIIGPTENPSTNIPSSDDIQKTQKSSAAQTPEDLETKKRKIVESGTAADSVRTCSICNVVCNSQTVFDSHLSGQKHASMMKKQAVSGMSMLVPPLVTAFPN 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 986695 989839 - CmaCh10G002220.1 Cma10g00222 301538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00222 453 MobiDBLite consensus disorder prediction 352 382 - -
Cma10g00222 453 MobiDBLite consensus disorder prediction 352 392 - -
Cma10g00222 453 SUPERFAMILY beta-beta-alpha zinc fingers 400 434 IPR036236 -
Cma10g00222 453 PANTHER ZINC FINGER RNA-BINDING PROTEIN 29 272 - -
Cma10g00222 453 PANTHER ZINC FINGER RNA-BINDING PROTEIN 282 438 - -
Cma10g00222 453 SUPERFAMILY beta-beta-alpha zinc fingers 236 269 IPR036236 -
Cma10g00222 453 Pfam Zinc-finger of C2H2 type 153 176 - -
Cma10g00222 453 Pfam Zinc-finger of C2H2 type 244 266 - -
Cma10g00222 453 Pfam Zinc-finger of C2H2 type 304 327 - -
Cma10g00222 453 Pfam Zinc-finger of C2H2 type 405 428 - -
Cma10g00222 453 MobiDBLite consensus disorder prediction 1 18 - -
Cma10g00222 453 SUPERFAMILY beta-beta-alpha zinc fingers 136 183 IPR036236 -
Cma10g00222 453 SUPERFAMILY beta-beta-alpha zinc fingers 286 333 IPR036236 -
Cma10g00222 453 SMART ZnF_U1_5 300 334 IPR003604 GO:0003676|GO:0008270
Cma10g00222 453 SMART ZnF_U1_5 401 435 IPR003604 GO:0003676|GO:0008270
Cma10g00222 453 SMART ZnF_U1_5 149 183 IPR003604 GO:0003676|GO:0008270
Cma10g00222 453 SMART ZnF_U1_5 239 273 IPR003604 GO:0003676|GO:0008270
Cma10g00222 453 SMART c2h2final6 152 176 IPR013087 -
Cma10g00222 453 SMART c2h2final6 303 327 IPR013087 -
Cma10g00222 453 SMART c2h2final6 404 428 IPR013087 -
Cma10g00222 453 SMART c2h2final6 242 266 IPR013087 -
Cma10g00222 453 MobiDBLite consensus disorder prediction 1 29 - -
Cma10g00222 453 Gene3D Classic Zinc Finger 283 335 - -
Cma10g00222 453 Gene3D Classic Zinc Finger 382 436 - -
Cma10g00222 453 Gene3D Classic Zinc Finger 135 184 - -
Cma10g00222 453 Gene3D Classic Zinc Finger 221 272 - -
Cma10g00222 453 PANTHER - 282 438 - -
Cma10g00222 453 PANTHER - 29 272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00222 - - - cmax:111485559 882.093
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g614 . . Bda06g00530 . . . . Bma12g00974 . . Cma10g00222 . Car10g00206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe07g00764 . . . . . . . . . . . Cpe18g00771 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011197 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00222 Cma_Chr10 FPKM 8.098849 8.15917 7.121911 7.486251 11.167565 9.216907 10.266474 6.293516 8.054919 6.002343