Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00230 ATGGCGGATTTCCCTCCCCACTTCCAGACCTTCATCTCCCCTCATTCCATGGAGGATCCTAGTCTCCACCTTCTCCCTCCTCCCTACTCTGTTCCACCCAACCCACCTCCTAATTTCACCAACTTCTTCCCATTCTCCAGCGACCCCTTCTTCCCCCACCAACCGCCACCGCAGTTTCCACCACCAAATCCGCCCGAACCCACCTCCAGCTTCCCACTTTTTCCGTCCCAAACTTCTCCCCCACCACCACTCTCTGAATTCCTCGACATCAAGAAGAGAAAATCCATGGATGTTTCAGAAAGCAGCTCTGGAATCTCAACTCCCCAACTCTCTGAAACAGGGTTCAACACAAAACAAAATTCAAGAAAAGGGAAGAGACTGAAACGAACAGAGATAGAAGAAGAGGAGAAATCAAGAAGAGAAGTGGTTCATGTTAGAGCCAGAAGAGGGCAAGCCACTGATAGCCACAGTTTAGCTGAAAGGGTGAGAAGAGGCAAAATCAATGAACGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGGATGGCAGTCATGTTGGATGAGATAATTAATTATGTTCAATCTCTGCAGAATCAAGTAGAGTTTCTGTCTATGAAACTGGCTGCAGCTAGCTCTTTGTATGACTTCAACTCGGAGGTCGATGCCATATCAAAATTACAGAGAGCGAAGGCACATGAAGCAAAAGAAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAATAGGTTGCTTCCACTCAAATTTGCCCCTTTGA 792 46.84 MADFPPHFQTFISPHSMEDPSLHLLPPPYSVPPNPPPNFTNFFPFSSDPFFPHQPPPQFPPPNPPEPTSSFPLFPSQTSPPPPLSEFLDIKKRKSMDVSESSSGISTPQLSETGFNTKQNSRKGKRLKRTEIEEEEKSRREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSLYDFNSEVDAISKLQRAKAHEAKEELERLMREGYGGIGCFHSNLPL 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1021588 1023449 + CmaCh10G002300.1 Cma10g00230 301546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00230 263 Coils Coil 198 218 - -
Cma10g00230 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 219 IPR036638 GO:0046983
Cma10g00230 263 CDD bHLH_AtBPE_like 141 224 - -
Cma10g00230 263 Gene3D - 147 223 IPR036638 GO:0046983
Cma10g00230 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 201 IPR011598 GO:0046983
Cma10g00230 263 MobiDBLite consensus disorder prediction 99 120 - -
Cma10g00230 263 MobiDBLite consensus disorder prediction 25 42 - -
Cma10g00230 263 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
Cma10g00230 263 MobiDBLite consensus disorder prediction 23 138 - -
Cma10g00230 263 SMART finulus 157 207 IPR011598 GO:0046983
Cma10g00230 263 Coils Coil 229 249 - -
Cma10g00230 263 MobiDBLite consensus disorder prediction 49 82 - -
Cma10g00230 263 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 3 262 IPR024097 GO:0006355
Cma10g00230 263 PANTHER TRANSCRIPTION FACTOR BEE 1 3 262 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00230 Cma18g00043 CCT
Cma10g00230 Cma13g01023 CCT
Cma10g00230 Cma18g00043 ECH
Cma10g00230 Cma13g01023 ECH
Cma10g00230 Cma11g00279 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00381 Cma-Chr1:1909530 Cma10g00230 Cma-Chr10:1021588 4.97E-41 dispersed
Cma10g00230 Cma-Chr10:1021588 Cma18g00043 Cma-Chr18:174590 2.57E-58 dispersed
Cma10g00230 Cma-Chr10:1021588 Cma11g00279 Cma-Chr11:1389994 4.88E-93 wgd
Cma10g00230 Cma-Chr10:1021588 Cma13g01023 Cma-Chr13:7841204 5.10E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35698 PF00010 HLH 4.50E-05 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00230 - - csv:101209353 288.115