Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00232 ATGAAGCCGTTTAGATCCAACGTTGTGGAAACCCTTCAGCTTTTGCGCCATGCTGTTATGGAGAATCCCTTTCTTCTATACTTGGCTCCTCTGTTTTTGCTTGCTTGGGCTTTCGAGAAATGGGTTTTTTCTTTATCTAGTTGGATCCCTCTAGCTATTGCCGTGTGGGCGACCTTACAGTATGGGAATTTTCAACGGCAACTAGTTGTAGAGGAGTTGAACAAAAAATGGAAGAAAATTGTGTTGGACACCTCGCCCACTACACCACTGGAGCACTGTGAATGGTTGAATAAGCTGTTGACTGAAATTTGGCCTAGCTATATCGACCCAAAACTTTCCTCAAAGTTCTCTTCTATTGTTGAGAAACGATTAAAACACCGGAGGCCAACACTTATTGATAAAATAGAATTATTGGACTTTTCTCTAGGTTCATGTCCTCCTGGCTTGGGCCTTCGTGGGACTCAATGGTCAACATCTGGCAATCAGAGAATCATGCGTTTGAGTTTTGATTGGGACACAAATGAAATAAGTATCATGTTGCAAGCCAAGTTGGCCATGCCATTTACTGGAACTGCACGGATTGTTATCAACAGCATTCACATAAAGGGTGATCTTCTCTTTAGGCCAATCTTGGATGGGAGAGCCATTTTGTATTCATTTGTTTGCACTCCAGAAGTGAGAATAGGAGTAGCTTTCGGAAGCGGCGGTAGCCAGTCGTTACCTGCAACAGAGCTTCCTGGTGTCTCTTCTTGGCTGGTTAAACTTCTAACAGACATCATAGTAAAGACAATGGTTGAACCTCGACGCCGCTGTCTCTCATTGCCAGCAGTTGACCTGGGTAAAAAGGTTGTCAGTGGTACATTATATGTGACAGTCATCTCAGCCAGTAAGCTTTCCAGGAATTACTCAAGAGGCAACTCTTCCAGAAAGCCTCTGAGTACTTATATGAATAGTCCCCCAGAAGAAAACTCAACTGATAAGGAAGAACTGCAGACATTTGTCGAGGTGGAATTTCATGAGCTAAGTAGGAAAACTACTCTAAGATCAGGCTCCAACCCTGTATGGAATTCAACGTTCAATATGATTTTGCATGAAGATACAGGAACTCTTCGGTTCAATCTTTATGAATCTAACCCAAGCCTTGTCAAGTATGATTATCTAGCCAGTTGTGAAGTAAAGATGAAGTATGCCGCTGATGATTCCACAACATTTTGGGCAATGGGATCTGACTCTGAAGTGATAGCAAAGCATGCTGAGTTTTGTGGAAAAGAGGTTGAAATGGTTGTCCCGTTTGAAGGCGTTGGTTGTGGGGAGTTAACAGTGAAGCTTGTTGCTAAAGAATGGCAATTTTCTGATGGTTCACATAGCTCGCTTAATCTTCATGTTAGACCTCAACAGCCGGTTAATGGGTCCTCAAACCTTCCTTCAAGAACTGGAAGGAAAATTTCAATTACCATTGTAGAAGGAAAAGATCTTAGTATGAAGGATAAATCTGCTAAGAGTGAGTCATATGTAAAACTGGAATATGGGAAGACTTCCTTTCAGGCTCTCCGGAAAACAAAAACTGCTGTTTCTGTAAATCCTATTTGGAATCAAAAGTTCGAGTTTGATGAGATTGGAGGTGGTGAATACCTCAAGATAAAATGCTTTGGCGTAGATATATTTGGTGATGAAAACATAGGTACTGCCCGAGTGAATTTGGAAGGATTTCTTGAAGGAACAGTCAGGGACGTATGGATACCCCTCGAGAAAGTAAATTCTGGAGAACTAAGGCTTCTGATAGAAGCACTCAAGGCAGATGACTATGAAGGATCAAGGGGTTCAAACACAGGCTCAAATAATGGTTGGATCGAACTTGTTATCATAGAAGCTAAAGATTTGGTTGCTGCTGATATTGGAGGAACAAGCGACCCTTATGTGAGAGTGCATTATGGAGACTTGAAGAAACGAACAAAGGTTATGTTCAAAACTTTAAATCCTCACTGGAACCAGACGTTAGAGTTCCCTGATAATGGGAGCCCTTTAGTGCTGTATGTTAAGGATCATAATGCTTTACTACCCACATCAAGCATTGGAGACTGTGTTGTTGAGTATCAAAGATTGCCTCCAAACCAAATGGCTGACAAATGGATACCTCTTCAAGGGGTGACAAGAGGAGAGATCCACATCCAAATCACAAGAAAAGTTCCTGATTCTCAGAAACAGAAAAGGCTTAGTTTAGATTCTGAATCATCTGCTGTTACCAAGGCACATCAAGTTTCAAGTCAGATGAAGCAAACAATCAGCAAGATTCGCAGTTTGTTCGAGGAGGCTAATCTCGACGGTGTTTCGGCCACGTTGAGTGAACTAGAAAGCCTGGAGGAAGTGCAGCAGGAGTATATACTACAGCTTGAAACTGAACAAACGCTTCTCATAAATAAGATTAAGGAGCTTGCTGAAGCTTCTCTTCCTCCACTCTGCAACCCTCAAGCTTGGTTTCCTCTTCTTTCTGCTTCTTTGGTTGCCTCCAATGGCCGACGAAAGCAAAGAAACAATGCATTCCAGACTCAGTTGTTGATTAAGCTTACAGATATGGCCTTTGCAACTACCAAACTATCGGAACTGCCATTGAAGAACTCGCTTCCACTCTTCTCCCACTCGCGTACTCTTCTTTCATCCCCCAATTTGTCTTTACAGATTCTAAAGACATTCTCTTCTCTCAGAACCCCCACTGAGCACAGCGGCAAGCGAATCCCTAAAACCTCCCACAATTCTGGACCCTCTTCTTCTTGGATCTCCAAATGGCCTCATGGGAGCTCTCGTAATGATCGTAAAGTCGAGAAGAATTTGGCCGAAACGACCCGAGATGATCGAACTGATCGAGCGGAGAATCAGACGCAATTCTTCGATAAGAACAGAGGGGAGAGTGCAGTTGATCGAATTGTGCTTCGCTTACGAAATTTAGGGATAGAGGAGGATAACGAATTGGATTCTCTCGAGCCAATGCCGGTGACGGGGGAGGAAAGATTTGGGGATTTACTTCAACGTGAATGGATTCGACCGGATACCATATTGGATGAAATGGTTCTGCCATGGGAGAGAGAGGAGGAAAGGGCTGAAGAGGAGGGCGGTGGAAGAGGGTTGAAAAGGAGAAAGATGAAACCTCCGACATTAGCTGAATTGACAATTGAAGATGAGGAGCTGAGGCGACTGAGGGGAATGGGGATGTTCATTAGAGAGCGGATTAACATACCCAAAGCAGGGATTACGCAAGCAGTGCTAGAGAAGATTCATGGGAAATGGAGGAAGGAGGAACTTGTAAGGCTTAAGTTTCACGAGGAGCTTGCACACGACATGAAGACAGCGCACCAAATTGTAGAGCGAAGAACTGGAGGATTGGTTCTATGGAGGTCTGGAAGTGTTATGGTAGTTTACCGCGGAAGTAACTATGAAGCGCCATCGAATACTAAGCCCCTTGCAAGGGAGGGGGAAGGGATATTCATCCCAGATGCTTCTTCTGCTGCCACTTCAACAATGAGTGGCAGTGTTGCGGCTTCAGCTCCAGGGACGGCCAAGATGACAAAGGAAGAGGTTGAATACAACCAACTCCTAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACAGGGGTGCTTCCTATTGATGCTGATCAGCTTCCTCCGAGTATTCCCGGTTACAAAACTCCTCTCAGGCTTCTCCCAACTGGAATGCGGTCGGGACTTACCAATGCAGAGATGACTGAGATGAGGAAGCTTGCGAAATCCTTGCCTTGTCATTTTGCTCTTGGGAGAAACAGGAACCATCAGGGCTTGGCTGTTGCTATACTTAAACTTTGGGAGAAAAGCCTAGTGGCTAAAATTGCTGTTAAAAGAGGTATACAGAATACCAATAATAAACTCATGGCTGAGGAGATAAGGTATTTAACAGGAGGTATGTTACTATTGAGGAACAAGTATTTTATCGTCGTATATCGTGGGAAGGATTTTCTCCCACCAAGTGTAGCTGCAGCGTTGGCAGAACGGCAGGAATTAACAAAACAGATTCAAGACTTGGAAGAGAAAGCTCGAAATAAAGTCGTCGAGGCAACTTCATCAAGCGATGATGGACAGGCACCTGCAGGTACCTTGGCTGAATTTTATGAGGCTCAGTCCAGGTGGGGAAGGGAAATATCTGCTGAAGAGCGTGAAAAAATGATTGAAGAAAGCTCGAGAGTGAAAACTGCAAAACTTGTCAGACGAATTGAACATAAGCTAGGTGTTGCCCAAGCTAAGAAACTTAGAGCAGAAAGATTGCTATCTAGAATTGAAGCGTCCATGGTTCTTTCTGGCCCGGATGATGACCAGGAAACAATAACGGATGAGGAACGGGTCATGTTTCGAAAAGTTGGGTTACGAATGACAGCATATTTACCCATAGGCATTCGTGGTGTCTTTGATGGTGTGGTTGAAAACATGCATTTACACTGGAAGCATAGGGAGCTGGTTAAGTTAATTAGCAAGCAAAAGACACTTGCTTTTGTGGAAGAAACAGCAAGATTGTTAGAGTATGAGAGTGGTGGGATACTAGTTTCGATCGATCGAGTTCCAAAAGGATATACCCTTATTTACTATCGAGGAAAGAATTATCGTCGACCCATTGCCTTGAGGCCAAGAAACTTGCTTACAAAGGCAAAAGCATTGAAGCGTTCGGTTGCCATGCAGCGTCATGAGGCTCTCAGTCAGCATATATCTGAACTCGAGAAAAACATAGAGGAAATGAAGAAAGAAATTGACGAGGAAGCATCTTTGTCTGCGATTTCAGATGATGACAGTGATGAAGATAGCAATGATGAAGACAGTGAGTTCGAAGAAGATAAAGATTTTGATTTTTCCGACTCGGAAAGCACCGATGATCCTCTGAACTAG 4908 43.68 MKPFRSNVVETLQLLRHAVMENPFLLYLAPLFLLAWAFEKWVFSLSSWIPLAIAVWATLQYGNFQRQLVVEELNKKWKKIVLDTSPTTPLEHCEWLNKLLTEIWPSYIDPKLSSKFSSIVEKRLKHRRPTLIDKIELLDFSLGSCPPGLGLRGTQWSTSGNQRIMRLSFDWDTNEISIMLQAKLAMPFTGTARIVINSIHIKGDLLFRPILDGRAILYSFVCTPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLLTDIIVKTMVEPRRRCLSLPAVDLGKKVVSGTLYVTVISASKLSRNYSRGNSSRKPLSTYMNSPPEENSTDKEELQTFVEVEFHELSRKTTLRSGSNPVWNSTFNMILHEDTGTLRFNLYESNPSLVKYDYLASCEVKMKYAADDSTTFWAMGSDSEVIAKHAEFCGKEVEMVVPFEGVGCGELTVKLVAKEWQFSDGSHSSLNLHVRPQQPVNGSSNLPSRTGRKISITIVEGKDLSMKDKSAKSESYVKLEYGKTSFQALRKTKTAVSVNPIWNQKFEFDEIGGGEYLKIKCFGVDIFGDENIGTARVNLEGFLEGTVRDVWIPLEKVNSGELRLLIEALKADDYEGSRGSNTGSNNGWIELVIIEAKDLVAADIGGTSDPYVRVHYGDLKKRTKVMFKTLNPHWNQTLEFPDNGSPLVLYVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVTRGEIHIQITRKVPDSQKQKRLSLDSESSAVTKAHQVSSQMKQTISKIRSLFEEANLDGVSATLSELESLEEVQQEYILQLETEQTLLINKIKELAEASLPPLCNPQAWFPLLSASLVASNGRRKQRNNAFQTQLLIKLTDMAFATTKLSELPLKNSLPLFSHSRTLLSSPNLSLQILKTFSSLRTPTEHSGKRIPKTSHNSGPSSSWISKWPHGSSRNDRKVEKNLAETTRDDRTDRAENQTQFFDKNRGESAVDRIVLRLRNLGIEEDNELDSLEPMPVTGEERFGDLLQREWIRPDTILDEMVLPWEREEERAEEEGGGRGLKRRKMKPPTLAELTIEDEELRRLRGMGMFIRERINIPKAGITQAVLEKIHGKWRKEELVRLKFHEELAHDMKTAHQIVERRTGGLVLWRSGSVMVVYRGSNYEAPSNTKPLAREGEGIFIPDASSAATSTMSGSVAASAPGTAKMTKEEVEYNQLLDGLGPRFVEWWGTGVLPIDADQLPPSIPGYKTPLRLLPTGMRSGLTNAEMTEMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEEIRYLTGGMLLLRNKYFIVVYRGKDFLPPSVAAALAERQELTKQIQDLEEKARNKVVEATSSSDDGQAPAGTLAEFYEAQSRWGREISAEEREKMIEESSRVKTAKLVRRIEHKLGVAQAKKLRAERLLSRIEASMVLSGPDDDQETITDEERVMFRKVGLRMTAYLPIGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVSIDRVPKGYTLIYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEEMKKEIDEEASLSAISDDDSDEDSNDEDSEFEEDKDFDFSDSESTDDPLN 1635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1031940 1042543 + CmaCh10G002320.1 Cma10g00232 301548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00232 1635 ProSiteProfiles C2 domain profile. 598 711 IPR000008 -
Cma10g00232 1635 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 860 1626 IPR045278 GO:0000375|GO:0003729
Cma10g00232 1635 MobiDBLite consensus disorder prediction 902 956 - -
Cma10g00232 1635 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 280 397 IPR035892 -
Cma10g00232 1635 Coils Coil 1335 1362 - -
Cma10g00232 1635 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 480 595 IPR035892 -
Cma10g00232 1635 SUPERFAMILY YhbY-like 1055 1145 IPR035920 -
Cma10g00232 1635 CDD C2 617 713 - -
Cma10g00232 1635 ProSiteProfiles C2 domain profile. 266 406 IPR000008 -
Cma10g00232 1635 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 860 1626 - -
Cma10g00232 1635 SMART C2_3c 481 579 IPR000008 -
Cma10g00232 1635 SMART C2_3c 616 710 IPR000008 -
Cma10g00232 1635 SMART C2_3c 287 406 IPR000008 -
Cma10g00232 1635 ProSiteProfiles CRM domain profile. 1054 1150 IPR001890 GO:0003723
Cma10g00232 1635 ProSiteProfiles CRM domain profile. 1240 1337 IPR001890 GO:0003723
Cma10g00232 1635 Pfam CRS1 / YhbY (CRM) domain 1057 1139 IPR001890 GO:0003723
Cma10g00232 1635 Pfam CRS1 / YhbY (CRM) domain 1453 1539 IPR001890 GO:0003723
Cma10g00232 1635 Pfam CRS1 / YhbY (CRM) domain 1242 1326 IPR001890 GO:0003723
Cma10g00232 1635 MobiDBLite consensus disorder prediction 1597 1635 - -
Cma10g00232 1635 Gene3D C2 domain 285 421 IPR035892 -
Cma10g00232 1635 MobiDBLite consensus disorder prediction 1591 1635 - -
Cma10g00232 1635 MobiDBLite consensus disorder prediction 931 956 - -
Cma10g00232 1635 Pfam C2 domain 617 713 IPR000008 -
Cma10g00232 1635 Pfam C2 domain 481 582 IPR000008 -
Cma10g00232 1635 Pfam C2 domain 286 396 IPR000008 -
Cma10g00232 1635 ProSiteProfiles CRM domain profile. 1450 1550 IPR001890 GO:0003723
Cma10g00232 1635 SUPERFAMILY YhbY-like 1451 1549 IPR035920 -
Cma10g00232 1635 MobiDBLite consensus disorder prediction 913 930 - -
Cma10g00232 1635 SMART CRS1_YhbY_2 1056 1139 IPR001890 GO:0003723
Cma10g00232 1635 SMART CRS1_YhbY_2 1452 1539 IPR001890 GO:0003723
Cma10g00232 1635 SMART CRS1_YhbY_2 1242 1326 IPR001890 GO:0003723
Cma10g00232 1635 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 612 726 IPR035892 -
Cma10g00232 1635 Coils Coil 1570 1597 - -
Cma10g00232 1635 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 89 275 IPR031468 GO:0008289
Cma10g00232 1635 SUPERFAMILY YhbY-like 1242 1334 IPR035920 -
Cma10g00232 1635 Gene3D C2 domain 467 598 IPR035892 -
Cma10g00232 1635 Gene3D C2 domain 605 728 IPR035892 -
Cma10g00232 1635 CDD C2 482 582 - -
Cma10g00232 1635 ProSiteProfiles C2 domain profile. 463 580 IPR000008 -
Cma10g00232 1635 MobiDBLite consensus disorder prediction 303 321 - -
Cma10g00232 1635 MobiDBLite consensus disorder prediction 303 326 - -
Cma10g00232 1635 Gene3D - 1241 1333 IPR035920 -
Cma10g00232 1635 Gene3D - 1451 1551 IPR035920 -
Cma10g00232 1635 Gene3D - 1054 1151 IPR035920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00232 - - - csv:101204113 1377.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00232 Cma11g00271 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00232 Cma-Chr10:1031940 Cma11g00273 Cma-Chr11:1376519 0 dispersed
Cma19g00261 Cma-Chr19:1866321 Cma10g00232 Cma-Chr10:1031940 1.15E-22 dispersed
Cma09g00946 Cma-Chr9:4759942 Cma10g00232 Cma-Chr10:1031940 4.20E-09 transposed
Cma14g02001 Cma-Chr14:14039978 Cma10g00232 Cma-Chr10:1031940 1.54E-07 transposed
Cma10g00232 Cma-Chr10:1031940 Cma11g00271 Cma-Chr11:1371544 0 wgd
Cma10g00232 Cma-Chr10:1031940 Cma13g01024 Cma-Chr13:7847124 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016343 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00232 Cma_Chr10 FPKM 5.886045 6.654335 13.083052 14.563123 27.199072 26.872393 28.612173 11.775602 10.929494 10.620166