Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00235 ATGCGTATGAGCTGCAACGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCCATCAGACCCTGTCTTCAATGGATCAAAACCCCTCAATCCCAAGCCAATGCTACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTCCTTAACCTCATCAATGCCGGCCCCGACCATCTCCGCCCTGCTATTTTTAAATCTTTGCTGTTCGAGGCGTGTGGCCGGATTGTCAATCCGATCTTCGGGTCGGCCGGATTGTTGTGGTCCGGGAGTTGGCAGCTGTGTCAGGACGCCGTGGAAGCCGTTCTAAATGGCGTACCGATTCCGCCGGTTTCTTGCGAGATGGCGACGTCCCACATGGGCCCACCTTTGAAAGGCTGCGACATCCGCCACGTGTCCAAAAAGCAAGGCTCCGGTCTTAGTGAGATAAAGAAGCGGCGGAGGTTCAAGCGCAAGCCGAAGCCGAAGGAGGAACCGGTTATGTTACCCGAGTTCGTAGTGGATGGACCGGCCCGGATTTCATCGGAGCCCCGGTGTTTCAAGTTTGAGTTGGACAATCTAGAGGGCCATGTGTCGCCGGAGAAGGTCTGCGGCAGCGAACATACCGAGTGCTTGTCGGTGGAGACCGCGGAGGCTTCTTCGGTGGGCCAGGGTGGTGGCGTGGAGTTGGAACTTACCTTGGGGTTTGGGCACGGTCGGATGCTGACGTGTAAAGAGAGATAG 726 56.75 MRMSCNGCRVLRKGCSESCSIRPCLQWIKTPQSQANATFFLAKFYGRAGLLNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLNGVPIPPVSCEMATSHMGPPLKGCDIRHVSKKQGSGLSEIKKRRRFKRKPKPKEEPVMLPEFVVDGPARISSEPRCFKFELDNLEGHVSPEKVCGSEHTECLSVETAEASSVGQGGGVELELTLGFGHGRMLTCKER 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1053099 1054472 + CmaCh10G002350.1 Cma10g00235 301551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00235 241 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Cma10g00235 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 231 - -
Cma10g00235 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 231 - -
Cma10g00235 241 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00235 Cma11g00267 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00235 Cma-Chr10:1053099 Cma14g00811 Cma-Chr14:4107612 3.21E-83 dispersed
Cma10g00235 Cma-Chr10:1053099 Cma11g00267 Cma-Chr11:1358315 6.02E-125 wgd
Cma10g00235 Cma-Chr10:1053099 Cma18g01019 Cma-Chr18:8518054 1.77E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35700 PF03195 LOB 7.40E-22 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00235 - - cmo:103494123 369.777