Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00237 ATGATCGAAGAAAGGCTGGACGAACAGTCTCTCATGGACGTTCGCGCCAAAGCAGGGAAGAATCGGCGCGAACGCTCGGCGAACACGGCACTCTGCGGTAACAACGATAGCCGGAAGAAGAGGCGGAGATTTGCATTCAGTTCAGAAACCACAATTCCAACATCCAGCGAGCCTCAGAAGCTTCCTTCATCGAAAAGGTCCAAGCCAGTTCGTTCTCCCCCTCGAACTTCACGAAAGTACGAGAAGAGGAGGTCGAGTGAGTCGGATGGTCATCGTCGATGGGTGTACTCTACTCGTGATTGCTCAAGATTTATAGATAAGATTATGGTTGCTTCATATAATATACTAGGAGTGGAAAATGCATCGAAGCATCCAGATTTGTATCATAGAGTGCCTTCCAAATTCATGGATTGGAGTTTCCGGAAAGAGCTTATATGCAATGCAATTAAATTTTACAATGCAGGCATCTTATGCTTGCAGGAGGTTGACCGTTTTAATGATTTGGATGAACTTTTCCAAAATTATGGCTACAAAGGTGTTTACAAGGCTAGAACTGGTGAAGCAAATGATGGGTGTGCTTTATTTTGGATCGAAAAACTGTTTACCCTTTTGCATCAAGAAAGTATAGAGTTCCAGGGTTTTGGGCTACGTAACAATGTTGCTCAACTATGTGTTTTCAAGATGAATAAATCTAAATCAAGGTCCAAAACAAGTCGAAGCTTTGTGATTGGGAACATACACGTTCTTTTCAACCCAAATCGAGGAGACATTAAGCTCGGGCAGGTCAGACTGTTTCTTGAAAAAGCTCATAGCCTCTCACAAAGATGGGGAAACATACCTGTTATTATGGCCGGGGATCTGAATAGCATACCAAGGAGTGCAATATATCAGTTTTTGGCTTCATCAGAGCTGGATATACAACTGCATGACCGCAGAAAGATTTCAGGGCAGCTTGATTTTTCATCATCACGTGGAGCCTTCAGATTTTGTAGTGAGGGTACAAAATGGTCCAATGTTTTAGCCTCAAGGTCCTTCAGATGGAGTGGTGAGGAAATAAGGATCGCATCTGGTATGGAGAACGTTACCTGTCTTCAGCACCATTTGAAGCTTTCCAGTGCATACTATGGGGTTCCTGGAAGTTGTAAAACAAGAGATGCTAATGGAGAACCTTTAGTAACTTCATTCCACTCCAACTTTATGGGAACTGTCGATTATATATGGCACTCAGAAAAACTTGCCCCTGTTAGGGTTCTGGAAACATTGCCTATTGATGCATTAAAAAGGACTGGAGGACTTCCTAATGAGAAATGGGGCAGTGATCATCTTGCTCTTGTGTGCGAACTGGCTTTTGATGACGAAGACAATGTGACTTGA 1374 43.16 MIEERLDEQSLMDVRAKAGKNRRERSANTALCGNNDSRKKRRRFAFSSETTIPTSSEPQKLPSSKRSKPVRSPPRTSRKYEKRRSSESDGHRRWVYSTRDCSRFIDKIMVASYNILGVENASKHPDLYHRVPSKFMDWSFRKELICNAIKFYNAGILCLQEVDRFNDLDELFQNYGYKGVYKARTGEANDGCALFWIEKLFTLLHQESIEFQGFGLRNNVAQLCVFKMNKSKSRSKTSRSFVIGNIHVLFNPNRGDIKLGQVRLFLEKAHSLSQRWGNIPVIMAGDLNSIPRSAIYQFLASSELDIQLHDRRKISGQLDFSSSRGAFRFCSEGTKWSNVLASRSFRWSGEEIRIASGMENVTCLQHHLKLSSAYYGVPGSCKTRDANGEPLVTSFHSNFMGTVDYIWHSEKLAPVRVLETLPIDALKRTGGLPNEKWGSDHLALVCELAFDDEDNVT 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1057890 1064791 + CmaCh10G002370.1 Cma10g00237 301553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00237 457 MobiDBLite consensus disorder prediction 1 24 - -
Cma10g00237 457 Pfam Endonuclease/Exonuclease/phosphatase family 111 441 IPR005135 GO:0003824
Cma10g00237 457 MobiDBLite consensus disorder prediction 47 70 - -
Cma10g00237 457 SUPERFAMILY DNase I-like 107 449 IPR036691 -
Cma10g00237 457 MobiDBLite consensus disorder prediction 1 85 - -
Cma10g00237 457 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 63 450 - -
Cma10g00237 457 Gene3D Endonuclease/exonuclease/phosphatase 82 456 IPR036691 -
Cma10g00237 457 PANTHER PROTEIN ANGEL 63 450 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00237 - - - bhj:120088620 767.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01492 Cma-Chr1:10477975 Cma10g00237 Cma-Chr10:1057890 6.54E-24 dispersed
Cma10g00237 Cma-Chr10:1057890 Cma14g00397 Cma-Chr14:1842506 3.92E-21 dispersed
Cma10g00237 Cma-Chr10:1057890 Cma10g00244 Cma-Chr10:1085603 4.96E-73 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g332 . . . Bda15g00518 . . . . . . Cma10g00237 . Car10g00224 . . . . . . . . . . . Cla06g01472 Cam06g1625 Cec06g1688 Cco06g1681 Clacu06g1590 Cmu06g1541 Cre06g2353 . . . Cone19ag0278 . . . . . . . . . . . Bma08g00064 . Cmo10g00252 . . . . . . . . . . . . . . . . . . . . . Lsi06g01335 . Chy02g02367 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006864 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 5 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00237 Cma_Chr10 FPKM 4.365244 4.954148 5.981969 5.686327 7.090772 6.937817 7.663208 8.754394 8.301277 8.622197