Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00241 ATGGCATCTCTTCCATATCTCCCATGCCTAACCCTGCTCTTACTCCTGCACGTTACTCTACCGATTGCCGTTTCACAAGATCCGACCCCCTCGAGCCCTACCATAGCTCAATGCACCACGAGTCTTCTTCAATTGGCATCGTGTGCGCCTTTCGTGCAAGGTATGGCGTCGACACCACCAATGACATGCTGTGGAAACCTGAAACAACTCTACACCAGTGTCCCCAGCTGCCTTTGCCTCTTGCTGAATGGCACTACCTTGAGTTCTTTCCCTATCAACACTACTAGAGCTACCCAGCTGCCTGATCTTTGCAGCCTTCAAGTTAACATCTCTGCATGTTCAGCTCTCCTTGAGCCACCAAGTCCTCCCAGCTCTCATGTTTCTCCTAGAGTAAACACCAACTCCACCATTACCAATGCTACGGTTCTAGCTACTCCAGTGGGTCAACCAACGCCAAAACCTAGCATGGTGGGGTTAGGATTGGGCAGCATCAGTGCTAGTTTCAAGCCAAGGGCGGGAATTCAGCTCACAGTAGCGATTGCTATGAAGACTTTTCTGTTTCTTGTAGTTCTTCATTGA 579 49.74 MASLPYLPCLTLLLLLHVTLPIAVSQDPTPSSPTIAQCTTSLLQLASCAPFVQGMASTPPMTCCGNLKQLYTSVPSCLCLLLNGTTLSSFPINTTRATQLPDLCSLQVNISACSALLEPPSPPSSHVSPRVNTNSTITNATVLATPVGQPTPKPSMVGLGLGSISASFKPRAGIQLTVAIAMKTFLFLVVLH 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1071914 1072657 - CmaCh10G002410.1 Cma10g00241 301557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00241 192 Pfam Probable lipid transfer 24 113 IPR016140 -
Cma10g00241 192 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 13 135 - -
Cma10g00241 192 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 37 113 IPR036312 -
Cma10g00241 192 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 13 135 IPR043325 -
Cma10g00241 192 CDD AAI_LTSS 45 106 - -
Cma10g00241 192 Gene3D - 34 113 IPR036312 -
Cma10g00241 192 SMART aai_6 38 113 IPR016140 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00241 - - - csv:101203136 259.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00241 Cma-Chr10:1071914 Cma08g00563 Cma-Chr8:3206383 1.19E-11 dispersed
Cma10g00241 Cma-Chr10:1071914 Cma10g00970 Cma-Chr10:5008547 2.91E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g334 . . . . . . . . . . Cma10g00241 . Car10g00227 . . . . . . . . . . . Cla06g01476 Cam06g1630 Cec06g1692 Cco06g1686 Clacu06g1595 Cmu06g1545 Cre06g2357 . . Cone13ag0290 . . . . . . . . . . . . . . Cmo10g00255 . . . . . . Cpe18g00752 . . . . . . . . . . . . . . Lsi06g01339 . Chy02g02370 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012982 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00241 Cma_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0