Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00243 ATGTATGGTGGTGATGAGGTATCCGCTATAGTTATTGATCTTGGTTCTCACACTTGCAAAGCTGGTTATGCCGGAGAAGATGCTCCCAAGGCTGTTTTCCCTTCCGTTGTTGGATGTATTGATGAAATGGATGTTGATGACACCACAAGTACTGAAAAGAATTCTGGATCTGCTGGAGAATCTAAAAGTAATGCTAAAAGTCTTGATACTGACAAAGGAAAGGGAAAACGCAAACTATACGTTGGTTCTCAAGCTTTAGGGTTCCGCCGTGATAATATGGAGGTACTTTCACCTATAAAGGATGGAGTTGTTGTTGACTGGGATATGGTCGATAGCATATGGGATCATGCATTCAGGGAATGTCTGCTGATTGATGCTCAAGAACATCCCATGCTACTTGCTGAACCATCTTCTAATTCACAACAACAGAGAGAAAGGACGGCTGAGATTATGTTCGAGAAGTACAAAGTTCCTGCATTGTTTTTGGCAAAAAATGCTGTTCTCACGTCATTTGCATCAGGTCGTGCTACATCACTTGTTGTTGACAGTGGTGGTGGATCAACAACTGTAGCTCCGGTACATGATGGCTATGTTCTACAAAAGATTGTGGAACTTGATTTCCCTAATACAACTGAAAGTTACAAATTATACTCACAGAGGGTAATTGCTAGTGATATTAAAGAATGCGTATGTCGAGCGCCAGATACTCCTTATGATGAAAGTGCATATTCAAATATCCCAATGACGCCATATGAACTTCCTGATGGCCAGACAATTGAAATTGGGGCTGATAGATTCAAGATTCCCGATGTTCTGTTTAACCCTTCGTTGGCACAGACTATTCCTGGGGTGGAAAGTTTCACCGAGACAGGTCGCTCAGTTCAGGGATTGCCACACATGGTAATCGAGAGTATAAATAAGTGTGATGTGGATATTCGCAGAGAACTCTTTAGTAGTATACTGCTTGCTGGTGGAACAGCTTCAATGCAGCAGCTCAAAGAACGACTTGAGAAAGATTTGTTAGAGGAGTCTCCTCAAGCTGCTAGGGTTAAAGTATTGGCGAGTGGAAATGCAACTGAAAGAAGATTCAGCGTCTGGATAGGAGGGAGTATATTGGCCTCTCTTGGTTCATTTCAGCAAATGTGGTTCTCCAAATCCGAGTACGAAGAACATGGGGCTTCCTATATTCAAAGAAAATGCCCGTAG 1206 42.37 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGCIDEMDVDDTTSTEKNSGSAGESKSNAKSLDTDKGKGKRKLYVGSQALGFRRDNMEVLSPIKDGVVVDWDMVDSIWDHAFRECLLIDAQEHPMLLAEPSSNSQQQRERTAEIMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKIVELDFPNTTESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQTIEIGADRFKIPDVLFNPSLAQTIPGVESFTETGRSVQGLPHMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1077552 1085064 + CmaCh10G002430.1 Cma10g00243 301559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00243 401 Gene3D - 278 360 - -
Cma10g00243 401 PANTHER ACTIN 202 400 IPR004000 -
Cma10g00243 401 Pfam Actin 4 400 IPR004000 -
Cma10g00243 401 Gene3D - 361 401 - -
Cma10g00243 401 SUPERFAMILY Actin-like ATPase domain 174 400 IPR043129 -
Cma10g00243 401 PRINTS Actin signature 247 263 IPR004000 -
Cma10g00243 401 PRINTS Actin signature 28 37 IPR004000 -
Cma10g00243 401 CDD NBD_sugar-kinase_HSP70_actin 97 203 - -
Cma10g00243 401 Gene3D Actin; Chain A, domain 4 200 277 - -
Cma10g00243 401 SUPERFAMILY Actin-like ATPase domain 5 181 IPR043129 -
Cma10g00243 401 PANTHER ACTIN 2 203 IPR004000 -
Cma10g00243 401 PANTHER - 202 400 - -
Cma10g00243 401 PANTHER - 2 203 - -
Cma10g00243 401 SMART actin_3 7 401 IPR004000 -
Cma10g00243 401 MobiDBLite consensus disorder prediction 47 74 - -
Cma10g00243 401 Gene3D - 4 199 - -
Cma10g00243 401 MobiDBLite consensus disorder prediction 50 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00243 K11340 ACTL6A, INO80K; actin-like protein 6A - csv:101218049 754.207
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00243 Cma-Chr10:1077552 Cma19g00282 Cma-Chr19:2115699 2.21E-88 dispersed
Cma10g00243 Cma-Chr10:1077552 Cma02g00806 Cma-Chr2:4772408 4.58E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g349 . . . . . . . Bma12g00933 . . Cma10g00243 . Car10g00229 . . . . . . . . . . . Cla06g01479 Cam06g1633 Cec06g1696 Cco06g1690 Clacu06g1599 Cmu06g1548 Cre06g2360 . . . . . . . . . Blo15g00369 . . . . . . . . . . . . . . Cpe18g00750 . . . . . . . . . . . . . . Lsi06g01342 . Chy02g02375 Cme02g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009830 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00243 Cma_Chr10 FPKM 15.667676 16.527496 18.63582 19.829725 36.998264 31.023918 37.887547 18.48209 15.493737 18.845585