Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00245 ATGTCAACTGGATCAGCTACTACCTGGACTAAAGAAGAAGATAAAGCGTTTGAAAACGCCATAGCCACGCGTTGGGCTGGAGAATTGGAAGGGAATAAAACCTCAGAAGAGATGTGGGAAAACATTGCTTCAATGGTTCCAACCAAGAACATGGAAGACTTGAAACAGCACTACCAAATGCTGGTGGAAGACGTCGGTGCTATCGAGTCCGGCCAAATTCCTATTCCCAACTATGATTCTGTTGCAGAAGAAGCAACTAAAGCCTCTACCAAGGCGAAGGATCATTATCTTCATCCTCATGGAGCTACTGGTTCTGATAGTAATAAAATACCCAATTCTGGTTTTGGAAGTGGGTTTTCTAGGCTCTCCCACGATTCATCTGCCCAAGCCACAAAGGGTGGATCCAGGTCTGAACAAGAAAGAAAGAAAGGGATCCCATGGACAGAGGAAGAACACAGGTTATTTCTACTGGGTCTAGACAAGTTTGGGAAAGGGGATTGGAGAAGCATTTCAAGAAACTTCGTTATATCCAGGACACCGACACAAGTGGCCAGTCATGCACAGAAATATTTCATACGATTGAACTCAATGAACAGAGATAGAAGAAGATCAAGTATTCATGACATAACCTCAGTTAATAATGGCGGTGGTGACGTCATGTCCCATCAATCTCCGATCACCGGCCACCAGACAAACGGCCCTAACCAGAGTAATCCGCCGGCTTTGGGGCCACCAGGGAAGCACGGGCCTCAGCAGCATCTGCCCGGAATCGGCATGTACGGGGCACCTGTTGGACATCCAGTGGCGGCTCGTCCAGGGCACATGGCATCGGCGGTTGGCACTCCAGTGATGCTTCCTCATGGAATCCATCCCCACCCTCCTTATGTCATGCCACTTGCTTATCCAATGGCACCTCCACCCTTGCATCAATGA 933 48.34 MSTGSATTWTKEEDKAFENAIATRWAGELEGNKTSEEMWENIASMVPTKNMEDLKQHYQMLVEDVGAIESGQIPIPNYDSVAEEATKASTKAKDHYLHPHGATGSDSNKIPNSGFGSGFSRLSHDSSAQATKGGSRSEQERKKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGGGDVMSHQSPITGHQTNGPNQSNPPALGPPGKHGPQQHLPGIGMYGAPVGHPVAARPGHMASAVGTPVMLPHGIHPHPPYVMPLAYPMAPPPLHQ 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1092891 1094340 - CmaCh10G002450.1 Cma10g00245 301561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00245 310 Pfam Myb-like DNA-binding domain 146 191 IPR001005 -
Cma10g00245 310 Pfam Myb-like DNA-binding domain 8 61 IPR001005 -
Cma10g00245 310 MobiDBLite consensus disorder prediction 105 134 - -
Cma10g00245 310 SUPERFAMILY Homeodomain-like 9 68 IPR009057 -
Cma10g00245 310 CDD SANT 146 191 IPR001005 -
Cma10g00245 310 ProSiteProfiles SANT domain profile. 147 195 IPR017884 -
Cma10g00245 310 PANTHER TRANSCRIPTION FACTOR KUA1 6 308 - -
Cma10g00245 310 PANTHER TRANSCRIPTION FACTOR MYBS1 6 308 - -
Cma10g00245 310 MobiDBLite consensus disorder prediction 202 262 - -
Cma10g00245 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 195 IPR017930 -
Cma10g00245 310 CDD SANT 8 62 IPR001005 -
Cma10g00245 310 MobiDBLite consensus disorder prediction 208 237 - -
Cma10g00245 310 Gene3D - 2 75 - -
Cma10g00245 310 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 142 193 IPR006447 GO:0003677
Cma10g00245 310 SMART sant 5 64 IPR001005 -
Cma10g00245 310 SMART sant 143 193 IPR001005 -
Cma10g00245 310 ProSiteProfiles Myb-like domain profile. 139 191 IPR001005 -
Cma10g00245 310 SUPERFAMILY Homeodomain-like 140 196 IPR009057 -
Cma10g00245 310 Gene3D - 145 197 - -
Cma10g00245 310 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Cma10g00245 310 MobiDBLite consensus disorder prediction 86 100 - -
Cma10g00245 310 MobiDBLite consensus disorder prediction 84 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00245 - - - cmax:111484899 619.002
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00245 Cma11g00261 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00245 Cma-Chr10:1092891 Cma20g00362 Cma-Chr20:1755070 6.49E-56 dispersed
Cma10g00245 Cma-Chr10:1092891 Cma11g00261 Cma-Chr11:1319866 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g360 . . Bda06g00488 Bda15g00658 Bpe12g00497 . . . . . Cma10g00245 Cma11g00261 Car10g00232 . . . Cpe04g01413 . . . . . . . Cla06g01481 Cam06g1636 Cec06g1698 Cco06g1694 Clacu06g1602 Cmu06g1551 Cre06g2364 . . Cone13ag0297 Cone19ag0268 . . . . . . . . . . . . . Cmo10g00264 Cmo11g00267 . . . . . Cpe18g00747 . . . . . . . . . . . . . . Lsi06g01345 Csa01g00367 Chy02g02377 Cme02g01760
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006249 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35702 PF00249 Myb_DNA-binding 2.80E-07 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00245 Cma_Chr10 FPKM 0.363393 0.590247 0.616446 0.841187 1.555546 1.999034 1.896213 0.0 0.0 0.246726