Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00248 ATGGCTTGCACGATGGGTCATCTGAGGGGTGGAGGCTTGTTTGAGGTAAAGGAAGTTAGTGGGAGGAGGAATGACTTGGAGGAGAGTGTTGAAGTCCGTGCAGGCACTTTTGGCCCACGGTTTACTCTTCTGTTTCACGCTGTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCTTACAGGTTATATTTTTTCCACTTTGGGTGTTTCATGTGGTTGTTGCTCGAGGAAGATTCTCATTACCTGCCCCATCTCTTCCTCATAATCGTCATTGGGCACCGTGCCATGCTGTTGTTGCGACACCTTTGCTTATAGCATTTGAGTTACTTCTTTGTATATACCTTGAGAGCCTATCTGTATTCGTCAGGGTATTGTTCTGTATGCTTATTGAGGCAATTCCATTTCTGCCAGTTTATGGTTTTGCTGCTGTGAACTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTATCTTAATAGATAATTTCAGGTCACTGATGCCTGGTGATGATGAAAGCATGAGTGATGAGGCAATATGGGAGACGCTGCCTCACTTTTGGGTTGCCATTTCAATGGTCTTCTTTGTGGCTGCTACAATATTTATTCTATTGAAGCTATGTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTCATTGCCGAGTGCTTTGCCTTTCTTGTATGTACAAAGTGGTCTAATCCGGCGATTCATAGAAATATTCAAACAAGAGAAAGTTGTTCATCATCTGCAGTAGTCAGATATCTAGACTGTAACAGTGGTCTAATAGCTTATTCAGAGCAGGATCAGCATCAAGACAGAATGTGTGGCCTTCAAGACATTGGAGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAATCCTACTCTGCATGTATTTAGAGGGAACGCCTGCGAGTGCAAAAGACCTGCCAATTCCTGTCCTTTTCTCGCCCCTTCTATTATTGCAAGGCGCCGCCGTTATTTATGCTATATCTAGGCTATTAGAGAAAGCTGTACTTCTCTTAAGAGGCGGATCTAGCACAGCATTGTATTTCAGTTTTTCTACTAGGGCTCATGCCTGTTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGATGGTGGTCAATTGATGAAGGCAGTCGAGAGGAGCAGGCACGATTGTACCATGAGGGTGCCTCTGGGTACAACACTTTTAGTGGATATCCTCCCGAGATTGTGAAGAAGATGCCCAAGAAAGATCTTGCTGAGGAGGTCTGGCGCCTTCAAGCTGCACTTGGGGAGCAGACAGAAATCACCAAGTACAGCCAACAGGAATACGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGAGAAATTAGCGTGGTCCTTCTTCCGTGTAGGCATCGCATACTATGCAGTTCCTGCTCTGAGAAGTGTAAAAAGTGCCCAATATGTCGTGTTCCGATCGAAGAACGGTTACCGGTATACGATGTATAG 1497 44.36 MACTMGHLRGGGLFEVKEVSGRRNDLEESVEVRAGTFGPRFTLLFHAVARSQARSFRLLQVIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCIYLESLSVFVRVLFCMLIEAIPFLPVYGFAAVNLKIVFLPLLAFEIIILIDNFRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATIFILLKLCGNVGALGWWDFIAECFAFLVCTKWSNPAIHRNIQTRESCSSSAVVRYLDCNSGLIAYSEQDQHQDRMCGLQDIGGHIMKIPIIVFQILLCMYLEGTPASAKDLPIPVLFSPLLLLQGAAVIYAISRLLEKAVLLLRGGSSTALYFSFSTRAHACLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRILCSSCSEKCKKCPICRVPIEERLPVYDV 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1102128 1110280 - CmaCh10G002480.1 Cma10g00248 301564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00248 498 Pfam Transmembrane Fragile-X-F protein 61 323 IPR019396 -
Cma10g00248 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 427 496 IPR013083 -
Cma10g00248 498 SUPERFAMILY RING/U-box 442 493 - -
Cma10g00248 498 ProSiteProfiles Zinc finger RING-type profile. 451 486 IPR001841 -
Cma10g00248 498 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 60 498 - -
Cma10g00248 498 Pfam Zinc finger, C3HC4 type (RING finger) 448 491 - -
Cma10g00248 498 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 60 498 - -
Cma10g00248 498 SMART ring_2 451 485 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00248 Cma11g00257 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02006 Cma-Chr4:12411883 Cma10g00248 Cma-Chr10:1102128 5.27E-160 dispersed
Cma10g00248 Cma-Chr10:1102128 Cma16g01147 Cma-Chr16:8819354 1.26E-10 dispersed
Cma08g00500 Cma-Chr8:2848147 Cma10g00248 Cma-Chr10:1102128 6.69E-06 transposed
Cma10g00248 Cma-Chr10:1102128 Cma11g00257 Cma-Chr11:1304803 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00248 - - csv:101215825 794.267