Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00249 ATGAATGAAAATGTTGATGAGCAAAGCAAGCTTCCCGAGCTCAAACTTGATGCTAAACAGGCTCAAGGGTTTCTCGCATTCTTCAAAACCCTACCCCCCGACTCAAGAGCTGTTCGATTTTTTGATCGTCGGGATTACTTTACTGTCCATGGCGATAATGCAGTTTTCATTGCAAAGACCTATTACCGTACTACAACTGCTTTACGACAACTGGGCAATGTATCTGAAGCTCTGTCTAGTGTGAGTGTCAGCAAAAATATGTTTGAATCCATTGCCCGGGATCTTCTTTTGGAAAGAATGGACCATACATTGGAGCTTTATGAGGGCAGTGGTTCCAATTGGAGACTGATCAAAAGTGGTTCACCGGGTAATATTGGCAGCTTTGAAGACGTTTTGTTTGCAAATAATGAAATGCAGGACAGCCCTGCTATTGTGGCACTATTACCGAACTTCCGAGAAAATGGGTGCATTGTTGGACTAGCCTACATTGATTTAACAAAAAGATTGATGGGGTTGGCTGAATTTCTCGACGATAGCCATTTTACTAATGTGGAGTCAGCTCTGGTTGGTCTTGGTTGTAAGGAATGCCTTCTGCCTCTAGACAGTGGAAAGTTCGGTGATTTAAAACCTCTACATGATGCATTGACAAAGTGTGGTGTGATGTTAACTGAGAGAAAAAAATCAGAATTTAAAATGAGAGATTTGGTGCAGGATCTTTCAAGGCTTGTCAAAGGTTCTGTTGAACCTGTTAGAGATATGGTATCTGGATTTGAATTTGCGCCTGCTGCCTTAGGAGCATTGCTGGCTTATGCAGAATTACTGGCAGATGAAAGCAATTATGGAAACTACAACATCCAGAAATACAATCTTGATAGCTACATGAGGTTAGACTCTGCTGCCATGAGAGCATTAAATGTCCTAGAAAGTAAAACTGATGCAAACAAAAACTTCAGCCTGTTTGGTCTCATGAATAGAACCTGTACTGCTGGAATGGGTAAAAGATTGCTTCATATGTGGCTAAAACAGCCTCTGTTAGACGTCAAAGAAATTAATTCTAGACTGGATCTTGTTCAAGCATTTGTGGAGGATACTGCTCTCCGCCAGGATTTGAGACAACATCTCAAAAGAATCTCAGATATTGAACGATTGACACAGTATCTCGAGAAGAGAAGAGCTGGATTACAGCACATTGTTAAACTTTATCAGTCAAGTATAAGGCTTCCATTCATTAAAAATGCCTTGGAGAATTATGAAGGACAATTTTCCTCACTTATCAAGGAGAAGTACATGGAATGTCTTGAGATCTGGACTGACAACGATCATCTGAACAAGTTCAATAATCTTGTGGAAACTGCTGTTGATCTTGATCAGCTTGAGAATGGAGAATATATGATTTCATCTAGTTACGACCCTGCTCTGTCCAAGTTGAGGAATGCGCAGGAATCGATAGAGCAGCAAATACAGGATTTGCATAGGCAGGTTGCTAATGATCTTGATCTTGCAGTTGATAAGGCTTTGAAGTTAGACAAAGGTACACAATTTGGACATGTTTTTAGAATTACTAAGAAAGAAGAACCAAAAGTAAGGAAAAAGCTCTCCACCCACTTCATTGTCCTTGAAACCCGAAAAGATGGAGTGAAGTTTACAAACACCAAACTTAAAAAGCTGGGTGACCAGTATCAGAAATTAGTCGAGGAGTACAAGAATTTCCAGAAAGAGTTGGTTCACCGAGTAATTGAAACTGCATCATCCTTCAATGAGGTATTCAGACCTTTGGCGGAAATGCTCTCTGAATTAGACGTTTTACTCGGTTTTGCTGATTTAGCCTCTAGCTGTCCAACTCCTTATACTAGGCCAGACATCACATCATCGGATGAGGGAAATATTATATTGGAAGGAAGTAGGCACCCCTGTGTGGAGGCTCAAGACTGGGTTAATTTCATACCAAATGATTGTAAATTAGTAAGGGGAGAAAGTTGGTTCCAAATCATTACTGGGCCTAATATGGGCGGAAAATCTACATTTATCCGACAGGTTGGAGTGAACATTCTAATGGCACAAGTTGGTTGTTTTGTTCCCTGTGACAAAGCTATTATTTCAGTTCGTGATTGCATTTTTGCCCGCGTAGGTGCAGGGGACTGTCAACTTCGTGGAGTTTCTACCTTTATGCAAGAGATGCTCGAAACTGCATCTATACTGAAAGGATCTACAGAGAAGTCTTTGATAATCATTGATGAATTGGGCCGTGGGACATCCACTTATGATGGATTTGGTTTAGCATGGGCCATTTGTGAACATCTTGTTGAAGTGATTAAAGCACCCACTTTATTTGCAACCCACTTCCACGAACTAACTGCACTAGCTCATGGCAATACTGATCTTGAGCCCCATGGAAAGCAAATTGTTGGTGTGGCAAATTTTCATGTCAGTGCACACATAGACTCATCAAATCACAAGTTGACAATGCTGTACAAGGTTGAACCTGGAGCTTGTGATCAAAGCTTTGGGATTCATGTAGCAGAATTTGCAAACTTTCCTTCTAGTGTCGTGGCACTTGCCAGAGAAAAGGCTTCTGAACTGGAAGATTTCTCCACTGATTCAACTACTTCAGCCAATACCGGGAAAGAGATACCATCAAAGCGAAAACGCGAGTTTGGTTCAGAAGACATGTCCAAAGGTGTAGTGCGGGCTCGTCAGTTTTTAGAGGAGTTTGCTAATCTTCCATTGGATAAAATGGATCTAAAGGAAGCTCTACAACAAGTGAGCCAATTACGAGATGGTTTGAAGAAGGATGCCGTGGACTCTAATTGGCTCCAACAATTCCTTTAA 2829 41.11 MNENVDEQSKLPELKLDAKQAQGFLAFFKTLPPDSRAVRFFDRRDYFTVHGDNAVFIAKTYYRTTTALRQLGNVSEALSSVSVSKNMFESIARDLLLERMDHTLELYEGSGSNWRLIKSGSPGNIGSFEDVLFANNEMQDSPAIVALLPNFRENGCIVGLAYIDLTKRLMGLAEFLDDSHFTNVESALVGLGCKECLLPLDSGKFGDLKPLHDALTKCGVMLTERKKSEFKMRDLVQDLSRLVKGSVEPVRDMVSGFEFAPAALGALLAYAELLADESNYGNYNIQKYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEINSRLDLVQAFVEDTALRQDLRQHLKRISDIERLTQYLEKRRAGLQHIVKLYQSSIRLPFIKNALENYEGQFSSLIKEKYMECLEIWTDNDHLNKFNNLVETAVDLDQLENGEYMISSSYDPALSKLRNAQESIEQQIQDLHRQVANDLDLAVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTHFIVLETRKDGVKFTNTKLKKLGDQYQKLVEEYKNFQKELVHRVIETASSFNEVFRPLAEMLSELDVLLGFADLASSCPTPYTRPDITSSDEGNIILEGSRHPCVEAQDWVNFIPNDCKLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKAIISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGSTEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATHFHELTALAHGNTDLEPHGKQIVGVANFHVSAHIDSSNHKLTMLYKVEPGACDQSFGIHVAEFANFPSSVVALAREKASELEDFSTDSTTSANTGKEIPSKRKREFGSEDMSKGVVRARQFLEEFANLPLDKMDLKEALQQVSQLRDGLKKDAVDSNWLQQFL 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1112237 1121432 - CmaCh10G002490.1 Cma10g00249 301565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00249 942 Gene3D - 617 939 IPR027417 -
Cma10g00249 942 Gene3D DNA repair protein MutS, domain I 7 121 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cma10g00249 942 Pfam MutS domain III 300 606 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cma10g00249 942 SUPERFAMILY DNA repair protein MutS, domain III 297 611 IPR036187 -
Cma10g00249 942 CDD ABC_MSH2_euk 630 861 - -
Cma10g00249 942 Pfam MutS domain I 23 128 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cma10g00249 942 Pfam MutS domain II 144 283 IPR007860 GO:0005524|GO:0006298|GO:0030983
Cma10g00249 942 Coils Coil 473 496 - -
Cma10g00249 942 Pfam MutS domain V 662 861 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cma10g00249 942 Coils Coil 911 931 - -
Cma10g00249 942 Gene3D MutS, connector domain 122 291 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cma10g00249 942 ProSitePatterns DNA mismatch repair proteins mutS family signature. 740 756 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cma10g00249 942 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 24 924 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Cma10g00249 942 Gene3D - 523 616 - -
Cma10g00249 942 Gene3D - 294 522 - -
Cma10g00249 942 SUPERFAMILY DNA repair protein MutS, domain II 146 309 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cma10g00249 942 MobiDBLite consensus disorder prediction 862 888 - -
Cma10g00249 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 862 IPR027417 -
Cma10g00249 942 PIRSF MSH2 6 942 IPR011184 GO:0005524|GO:0006298|GO:0030983
Cma10g00249 942 Pfam MutS family domain IV 469 565 IPR007861 GO:0005524|GO:0006298|GO:0030983
Cma10g00249 942 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 24 924 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cma10g00249 942 Coils Coil 546 573 - -
Cma10g00249 942 SMART DNAend 314 642 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cma10g00249 942 SMART mutATP5 659 858 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00249 K08735 MSH2; DNA mismatch repair protein MSH2 - csv:101215589 1724.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01530 Cma-Chr2:8702141 Cma10g00249 Cma-Chr10:1112237 1.42E-45 dispersed
Cma10g00249 Cma-Chr10:1112237 Cma16g00130 Cma-Chr16:582197 4.25E-50 dispersed
Cma10g00249 Cma-Chr10:1112237 Cma05g01335 Cma-Chr5:10098570 1.46E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g364 . . Bda06g00491 . . . . Bma12g00941 . . Cma10g00249 . Car10g00237 . . . . . . . . . . . Cla06g01486 Cam06g1640 Cec06g1700 Cco06g1698 Clacu06g1606 Cmu06g1555 Cre06g2367 . . . Cone19ag0263 . . . . . Blo15g00365 . . Bpe07g00731 . . . . Cmo10g00269 . . . . . . Cpe18g00743 . . . . . . . . . . . . . . Lsi06g01348 Csa01g00363 Chy02g02380 Cme02g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007788 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00249 Cma_Chr10 FPKM 0.920368 1.125043 3.04659 2.807135 3.514493 2.775494 3.515297 2.328479 2.094014 2.318156