Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00256 ATGGATGCTCGCCGAGGCTCCCGCATCGTCAACCCCAAAGTTCGTCAGGTCGGATTCTTCACCCTCGACGCTCCTAATTCCCCTGACCGTTCCCTCTCCGGTCCGGCCAACTGTGTCCCTTCTCAACAATCCCTCTCTCCTCCTACCAATTCCTTGTCTCCGGTTATGATCCCCCCTCCCCGTCATCTCTCCGACAACCTTGCCTCTCGCTCTGCTGTTCTTCCTGTTCCGGCTCCTGCTAATTGGAGGAATTCCGCTGATCAGATTCCTGTTGGCAGCTATAACCCTTCCGAGACGCTGCTTGCGACGTCCCCTATGGCGTCGCCTTCCAGTAGAATTGAGGACGAAGAGCTGGAGATGTCGGAGGATTCTTCCACCTCCGTTTGGTATCGCCGGAGTGGTTCCGGGAAGATTGCCTCGAGCTTTCCTGGCGTTGGAATCCACATGGCGGCCAAGTCGTCCGAGAACTCGCAGGCGCTGCCTCTTAAGACGTTGGAACCTAATAAGCCTGCTGGAGTTGCAGAAAAGAACGGGGGGGCATCCACAGAGGTACAGAATCGACAACCACCATCAAATTCGAAACCCCTGAAGGCAAAAACAACAAAGGCTGAAAGACGAGCTCTACAGGAGGCACAACGAGCTGCAAAAGGTGAGGCGAATAATTCAGGTAATGCTCCTGGTAAAGTTGTGAAGCAGTCATTGGCTATGAAAGATAACAATGCCATGCCTTCGGTTGCACCTACTGACAAAAGAGGAGGTGATCGCACACTTGATAAAGAAAGGAAGAAAGATGCTCCCCCTCCACGAATGCAGTTTGATGATAAAAATAGGGTAGAAAAGGCTAAAAAGCGAGCCGTTTTCAACCAAACTGAAGCAAGAAATAGGGTCGAATTATTTCGCCATTTGCCACAATACGAGCAGGGAACTCAGCTTCCTGATCTCGTGTCGAAGTTTTTCCAACTTGACCCTATTCATCCTGCCATTTACAAGGTTGGTTTACAATATATGGCCGGAGATATATGTGGAGGCAATGCTCGTTGTATTGTTATGCTTCATGCATTTCAACAGGCTATCAAAGACTACTCAACTCCGCCACAGAAGGTTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTATGTGTCATTCTTCAACGAGTGTAGGCCACTATCTGTTAGCATGGGAAATGCTATTAGGTTTTTGAAAAACCGCATTGCCAAATTACCATTGAATCTTCCGGAATCTGAAGTAAAAGCTACGCTTTGCTCAGATATCAATCGCTTTATCAATGAAAAGATTATAATAGCGGATGAGGTCATAGTTAGACATGCTGCTACTAAAATAAGGGATGGAGATGTTCTTCTTACATATGGATCATCATCTGTTGTAGAGATGCTTCTATTACATGCCCATGAACTCGGAAAAGAATTCCGTGTTGTGGTGGTGGATTCCCGTCCAAAACAAGAAGGGCGAGCATTGCTTCGTAGGCTCATAGAGAGGGGCCTAAATTGTACATACACTCATATCAATGCTATTTCTTATGTGATGCATGAAGTGACGCGAGTTTTTCTCGGGGCTGCTGCAGTATTATCTAATGGAACTGTATATTCAAGAGTGGGAACTGCAGCTGTTGCCATGGTTGCTAATGCATTCCGTGTTCCAGTCTTAATCTGCTGCGAAGCTTATAAATTTCATGAAAGGGTACAGCTTGACTCAATATGTTTCAATGAATTAGGTGATCCAGATGCTATCTCAAAGGTTCACGAAAGGAAGGATATAAATTATCTAGATAATATGACTGCTAAAGAACAATTGCAACTTCTAAATTTAATGTATGACGCTACTCCTTCGGATTACATCTCAATGATTGTCACAGATTATGGCGTGATCCCACCTACAAGCGTGCCGGTGATCGTGCGAGAGTATCGGAGAGAGCACCTATGGATATAA 1950 46.0 MDARRGSRIVNPKVRQVGFFTLDAPNSPDRSLSGPANCVPSQQSLSPPTNSLSPVMIPPPRHLSDNLASRSAVLPVPAPANWRNSADQIPVGSYNPSETLLATSPMASPSSRIEDEELEMSEDSSTSVWYRRSGSGKIASSFPGVGIHMAAKSSENSQALPLKTLEPNKPAGVAEKNGGASTEVQNRQPPSNSKPLKAKTTKAERRALQEAQRAAKGEANNSGNAPGKVVKQSLAMKDNNAMPSVAPTDKRGGDRTLDKERKKDAPPPRMQFDDKNRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDPIHPAIYKVGLQYMAGDICGGNARCIVMLHAFQQAIKDYSTPPQKVLGRDLTAKIGGYVSFFNECRPLSVSMGNAIRFLKNRIAKLPLNLPESEVKATLCSDINRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSSVVEMLLLHAHELGKEFRVVVVDSRPKQEGRALLRRLIERGLNCTYTHINAISYVMHEVTRVFLGAAAVLSNGTVYSRVGTAAVAMVANAFRVPVLICCEAYKFHERVQLDSICFNELGDPDAISKVHERKDINYLDNMTAKEQLQLLNLMYDATPSDYISMIVTDYGVIPPTSVPVIVREYRREHLWI 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1139004 1144326 - CmaCh10G002560.1 Cma10g00256 301572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00256 649 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 1 649 - -
Cma10g00256 649 SUPERFAMILY NagB/RpiA/CoA transferase-like 295 642 IPR037171 -
Cma10g00256 649 MobiDBLite consensus disorder prediction 251 272 - -
Cma10g00256 649 Pfam Initiation factor 2 subunit family 341 632 IPR000649 GO:0044237
Cma10g00256 649 MobiDBLite consensus disorder prediction 198 212 - -
Cma10g00256 649 Gene3D - 435 642 IPR042529 -
Cma10g00256 649 MobiDBLite consensus disorder prediction 179 197 - -
Cma10g00256 649 MobiDBLite consensus disorder prediction 21 63 - -
Cma10g00256 649 MobiDBLite consensus disorder prediction 156 272 - -
Cma10g00256 649 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 649 - -
Cma10g00256 649 MobiDBLite consensus disorder prediction 97 125 - -
Cma10g00256 649 MobiDBLite consensus disorder prediction 26 51 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00256 Cma11g00245 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00256 Cma-Chr10:1139004 Cma11g00247 Cma-Chr11:1252220 0 dispersed
Cma08g00830 Cma-Chr8:5028613 Cma10g00256 Cma-Chr10:1139004 2.51E-14 transposed
Cma10g00256 Cma-Chr10:1139004 Cma11g00245 Cma-Chr11:1244761 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00256 K03680 - csv:101215104 1167.91