Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00258 ATGCCTGTTTCGACTCGGTCTCGGATCATGAACGAAGAACATATTGGTGCAGTTCCAGGTCAAGAAGATAAACAGCAGCTGAATCTTCCACCTAGAAGTCTTCACCATGGATTGAAAGAGAAGATGAAGGCATTAACCCTTTTGTACGAGCAGCAGAAGCTTGCTTCTGCAGCTCTTAAGAGGCCGTCACCAAAAGGGGAAGTTCTAATTGGTGAGCCAAAGCTTGAGAATGTAATGAGAGAAAATGCAATGCCTAATTCCACTGTTACCAGAACTTATGTTCTTCCCCAGCTGCCGATGACTGATGCTAAGGAGAATGTGGTGGTTGGAGCTGATCGGATTGTCGGGTTTTCGTGCTCGAAAGAGGCGAGTTTGTCGACGAATGTCGCGAGGAAATTGTTGCTAGGGAACTCAATGCCTGTAGTGGAAAAGATGGAGAATGTGGGGTGTAATAAATTGCAAGAAGTGGAGGAATTGGGAGAAAGCCGGATTTTGGTGTTTGTGAGGCTAAGGCCAATGGCTAAGAAGGAAAAGGAAGTGGGTTCAAGGTGTTGTGTTAAAATAGTGAATGGAAGAGATCTTTACTTGACAGAGTTTGCTAATGAGAATGATTATTTGAGACTTAAGAGGCTTCGCGGGCGTCATTTTAGCTTCGACGCTTCATTTCCGGACACCACCAATCAGCAAGAAGTCTATGCTACCACGACAGCAGAGGTTGTAGAAGCAGTTTTGCAGGGAAGGAATGGTTCTGTGTTCTGTTATGGTGCCACTGGGGCTGGAAAGACATACACAATGCTGGGAACGGTTGAGAGCCCTGGAGTTATGGTTTTGGCAATCAAAGACCTCTTCACCAAGATTAGGCAGAGGAGCTGCGATGGGAACCATACGGTCCACCTCTCTTACATTGAGGTTTACAATGAAACAGTCAGAGATTTGTTGTCCCCAGGAAGGCCATTAGTCCTCAGACAAGACAAGCAGGGCATTGTTGCAGCTGGAATTACACAATGTAGAGCTTACTCCACGGATGAAGTGATGGCCTTGCTTCAGCGAGGAAACCAAAACCGAACAACCGAACCAACCCGAGTTAACGAAACTTCTTCCCGTTCCCATGCTATATTACAGGTTACAGTTGAATATCGAGCCAAAGACAGTGGAATGAACATCGTTAACCGAGTCGGGAAGCTCTCATTGATTGATCTCGCCGGGTCAGAGAGGGCACTTGCCACAGATCAAAGAACATTAAGATCTCTTGAGGGAGCAAACATAAACAGATCACTACTCGCTTTAAGTAGTTGCATCAATGCCCTTTTGGAAGGAAAGAAACACATACCTTATAGGAATTCAAAACTCACTCAACTTCTGAAGGATTCATTAGGAGGAGCTTGTAACACTGTGATGATTGCAAATATTAGCCCAAGCGACTTATCATTTGGTGAAACCCAAAATACACTTCATTGGGCTGATCGTGCTAAAGAGATCAGAACTAAGGTTGCAGAAACAAATGAGGAAATAATGAAGCCACCTGAATCTGAATTGGACCAGGCTAAACTACTGCTTGCGTTGCAGAAAGAAAATCATGAATTGCGTGTGCAGTTGACTCACCAACAACGGAAGTTGCTTACCTTACAGTCTCAATCCCTGGCTGCAGTGGCTTCTCCAACCCCATCTTCAGCCACATCTCTTCTAACTCCTCCAACGTCTGTTCGAGAGCTTCGCCACACGGTGAAACGATTAGAAGCAGAGCTTGAGAAGGCAAAGAAAGAGCACATTGTGGAGTTAAAGCACAAAGATGATCATATCAATGAGCTGTTGAAGAAAAGCAAGAAAACAGCAGGGTTGGTGAGAGGAGAAGGCGTAAAGAGGGTAAGGACAAGAACTAGCTTAAGACCAAAGGAGGAGGAGCCAAGCATAGGCGAAGTGAAGAGCCCCAGGTACCGTTTCAAATCACCAGCTCCAACAGCTAAGAAACGAAGCTTTTGGGACATAACAGCAGCTAATAGTCCATCTGTTGCCACATTAAATGGAAGGAAGACCAGAAGTCATGTACTTGCAGAGCCTCCTCCTCCTACTTTTGCTCCCTCTATGCTTCGTCAGCCAGGTTTTTCTCGACAGAAGCCATAG 2121 45.45 MPVSTRSRIMNEEHIGAVPGQEDKQQLNLPPRSLHHGLKEKMKALTLLYEQQKLASAALKRPSPKGEVLIGEPKLENVMRENAMPNSTVTRTYVLPQLPMTDAKENVVVGADRIVGFSCSKEASLSTNVARKLLLGNSMPVVEKMENVGCNKLQEVEELGESRILVFVRLRPMAKKEKEVGSRCCVKIVNGRDLYLTEFANENDYLRLKRLRGRHFSFDASFPDTTNQQEVYATTTAEVVEAVLQGRNGSVFCYGATGAGKTYTMLGTVESPGVMVLAIKDLFTKIRQRSCDGNHTVHLSYIEVYNETVRDLLSPGRPLVLRQDKQGIVAAGITQCRAYSTDEVMALLQRGNQNRTTEPTRVNETSSRSHAILQVTVEYRAKDSGMNIVNRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALLEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPSDLSFGETQNTLHWADRAKEIRTKVAETNEEIMKPPESELDQAKLLLALQKENHELRVQLTHQQRKLLTLQSQSLAAVASPTPSSATSLLTPPTSVRELRHTVKRLEAELEKAKKEHIVELKHKDDHINELLKKSKKTAGLVRGEGVKRVRTRTSLRPKEEEPSIGEVKSPRYRFKSPAPTAKKRSFWDITAANSPSVATLNGRKTRSHVLAEPPPPTFAPSMLRQPGFSRQKP 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1147864 1151680 + CmaCh10G002580.1 Cma10g00258 301574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00258 706 Pfam Kinesin motor domain 169 493 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma10g00258 706 Gene3D Kinesin motor domain 155 499 IPR036961 -
Cma10g00258 706 ProSitePatterns Kinesin motor domain signature. 393 404 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cma10g00258 706 MobiDBLite consensus disorder prediction 671 706 - -
Cma10g00258 706 MobiDBLite consensus disorder prediction 624 650 - -
Cma10g00258 706 SMART kinesin_4 161 501 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma10g00258 706 Coils Coil 568 595 - -
Cma10g00258 706 Coils Coil 518 538 - -
Cma10g00258 706 PANTHER KINESIN-LIKE PROTEIN 130 705 - -
Cma10g00258 706 ProSiteProfiles Kinesin motor domain profile. 163 493 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma10g00258 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 538 IPR027417 -
Cma10g00258 706 MobiDBLite consensus disorder prediction 624 641 - -
Cma10g00258 706 PRINTS Kinesin heavy chain signature 246 267 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma10g00258 706 PRINTS Kinesin heavy chain signature 360 377 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma10g00258 706 PRINTS Kinesin heavy chain signature 394 412 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma10g00258 706 PRINTS Kinesin heavy chain signature 443 464 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma10g00258 706 PANTHER CENTROMERE PROTEIN E 130 705 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00258 K10401 KIF18_19; kinesin family member 18/19 - csv:101222937 1147.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00258 Cma-Chr10:1147864 Cma03g00444 Cma-Chr3:4622287 1.47E-59 dispersed
Cma10g00258 Cma-Chr10:1147864 Cma11g00249 Cma-Chr11:1260640 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g379 . . Bda06g00496 . . . . Bma12g00945 . . Cma10g00258 . Car10g00243 . . . . Bhi02g00015 . . . . . . Cla06g01495 Cam06g1649 Cec06g1709 Cco06g1707 Clacu06g1615 Cmu06g1564 Cre06g2376 . . Cone13ag0006 Cone19ag0005 . . . . . Blo15g00357 . . Bpe07g00737 . . Bma08g00253 . Cmo10g00275 . . . . . . Cpe18g00737 . . . . . . . . . . . . . . Lsi06g01359 Csa01g00353 Chy02g02390 Cme02g01775
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007142 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00258 Cma_Chr10 FPKM 3.728726 3.858638 0.224137 0.24758 7.646452 8.976167 7.771638 0.0 0.0 0.0