Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00259 ATGGCTCTGGAGTTCTCATCCCGAAGGCACTTCCATTGGACAAGGAAGGTCAGTAATGAAGAAGAAGACGATTCCACCTTCAAATCATCAGACTCTGCCAAAGAAGAAAAGCAGGAGAACGCCAAGTCCATTTTACAGGAGCCACAGGAACAGCAGCAGGTTCGAGCACAATTGACCAGGAGGAAACTGCAACAGCTCGCTGTCTCTCGGTTCCGTTCGGTTCTCACCGCCCTTGGCCGCAACCGCAACCCACAACTTGGTCTCCGTTCTCGAGTGATTGGAACATTATTTGGTTCTCGCCGGGGGCATGTACATTTTGCATTTCAGAGAGATCCCAGTTCACATCCAGCTTTCTTGATCGAGCTTGCTACACCAATCAGTGGTCTGGTGAAGGAAATGGCATCTGGACTTGTTCGAATTGCGCTGGAATGTGATAAAGAGAAGGATGTGAACAAGAAACCAGGAGGGAGACTACTTGAAGAGCCTGTTTGGAGGACATTTTGCAATGGGAAGAAATGTGGCTTTGCTTCAAGGAGAGAATGTGGACCTAAGGAGTTGAAGATATTGAAAGCTGTGGAGCCAATTTCCATGGGCGCTGGTGTCTTACCGGTGGAGGACGAAGGCACCGAAGGCAGCAGTGGTGGCAGTGGAGAAGGAGAAGGTGGATCAGATGGTGATATCATGTACATGAGGGCAAAGTTTGAGAGAATTGTAGGCTCAAGGGATTCTGAAGCTTTCTACATGATGAACCCAGACAGTAATGGAGCTCCTGAGCTCAGTATCTATTTGCTAAGAGTATAA 801 48.31 MALEFSSRRHFHWTRKVSNEEEDDSTFKSSDSAKEEKQENAKSILQEPQEQQQVRAQLTRRKLQQLAVSRFRSVLTALGRNRNPQLGLRSRVIGTLFGSRRGHVHFAFQRDPSSHPAFLIELATPISGLVKEMASGLVRIALECDKEKDVNKKPGGRLLEEPVWRTFCNGKKCGFASRRECGPKELKILKAVEPISMGAGVLPVEDEGTEGSSGGSGEGEGGSDGDIMYMRAKFERIVGSRDSEAFYMMNPDSNGAPELSIYLLRV 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1154937 1155737 - CmaCh10G002590.1 Cma10g00259 301575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00259 266 Pfam Protein of unknown function, DUF617 92 265 IPR006460 GO:0010274
Cma10g00259 266 PANTHER PROTEIN MIZU-KUSSEI 1 4 266 IPR006460 GO:0010274
Cma10g00259 266 TIGRFAM A_thal_3588: uncharacterized plant-specific domain TIGR01570 92 266 IPR006460 GO:0010274
Cma10g00259 266 PANTHER BNAC07G49860D PROTEIN 4 266 - -
Cma10g00259 266 MobiDBLite consensus disorder prediction 200 225 - -
Cma10g00259 266 MobiDBLite consensus disorder prediction 14 43 - -
Cma10g00259 266 MobiDBLite consensus disorder prediction 14 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00259 - - - csv:101214386 446.817
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00259 Cma13g01048 CCT
Cma10g00259 Cma13g01048 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00259 Cma-Chr10:1154937 Cma18g00028 Cma-Chr18:108496 3.64E-125 dispersed
Cma10g00259 Cma-Chr10:1154937 Cma11g00250 Cma-Chr11:1267476 1.78E-152 wgd
Cma10g00259 Cma-Chr10:1154937 Cma13g01048 Cma-Chr13:7981602 5.80E-114 wgd
Cma10g00259 Cma-Chr10:1154937 Cma18g01053 Cma-Chr18:8764167 9.05E-89 wgd
Cma10g00259 Cma-Chr10:1154937 Cma04g01546 Cma-Chr4:7838834 2.49E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g380 . Blo16g00146 Bda06g00497 . . Bpe13g00335 Bma06g00007 Bma12g00946 Cmo13g01089 . Cma10g00259 . Car10g00244 . Sed08g0327 Cpe20g00100 . Bhi02g00016 Tan09g1959 Cmetu02g0820 . Hepe09g0317 . . Cla06g01496 Cam06g1650 Cec06g1710 Cco06g1708 Clacu06g1616 Cmu06g1565 Cre06g2377 . . Cone13ag0007 Cone19ag0006 Lsi02g00156 Csa01g00640 Chy12g01462 Cme12g01902 . Blo15g00356 Bda11g01789 . Bpe07g00738 Bpe15g00552 Bma03g00880 . Sed14g0142 Cmo10g00277 . Cma13g01048 . Car13g00881 . . Cpe18g00736 Bhi08g01038 Tan05g2301 Cmetu08g1010 Lac10g0205 Hepe07g2422 . . Cla04g01118 Cam04g1171 Cec01g1682 Cco01g1730 Clacu04g1199 Cmu04g1178 Cre01g1476 Lsi06g01360 Csa01g00352 Chy02g02391 Cme02g01776
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000518 5 3 5 6 5 3 4 3 3 3 3 3 6 3 3 6 3 4 6 2 3 3 3 4 3 3 3 6 3 2 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00259 Cma_Chr10 FPKM 18.86392 18.715918 1.81086 3.620762 14.178746 12.926015 12.537784 1.876272 1.909863 1.256001