Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00260 ATGCCCTTCCCTCCACCTCGATCGCCTCCTTCGATTCCGTCTCGAAGGTTCGATATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCATCGCTTCCAAAAGCGACTATGACCAAAATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCCCAAGACCTTCTGATCGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATACGAACAACACAGGCACGAAACTATGAAATTTCCGCAGCAAGACTCGTTGAAAGGTGGGAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCGGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 537 46.55 MPFPPPRSPPSIPSRRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1156363 1159837 - CmaCh10G002600.1 Cma10g00260 301576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00260 178 PANTHER PROTEIN DR1 HOMOLOG 19 177 IPR044255 -
Cma10g00260 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 97 IPR003958 -
Cma10g00260 178 MobiDBLite consensus disorder prediction 162 178 - -
Cma10g00260 178 SUPERFAMILY Histone-fold 30 164 IPR009072 GO:0046982
Cma10g00260 178 MobiDBLite consensus disorder prediction 155 178 - -
Cma10g00260 178 Gene3D Histone, subunit A 22 167 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00260 Cma-Chr10:1156363 Cma04g01239 Cma-Chr4:6346452 7.97E-21 dispersed
Cma10g00260 Cma-Chr10:1156363 Cma11g00251 Cma-Chr11:1269086 4.81E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35704 PF00808 CBFD_NFYB_HMF 3.60E-22 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00260 K21751 - csv:101214627 295.434