Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00260 ATGCCCTTCCCTCCACCTCGATCGCCTCCTTCGATTCCGTCTCGAAGGTTCGATATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCATCGCTTCCAAAAGCGACTATGACCAAAATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCCCAAGACCTTCTGATCGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATACGAACAACACAGGCACGAAACTATGAAATTTCCGCAGCAAGACTCGTTGAAAGGTGGGAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCGGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 537 46.55 MPFPPPRSPPSIPSRRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1156363 1159837 - CmaCh10G002600.1 Cma10g00260 301576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00260 178 PANTHER PROTEIN DR1 HOMOLOG 19 177 IPR044255 -
Cma10g00260 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 97 IPR003958 -
Cma10g00260 178 MobiDBLite consensus disorder prediction 162 178 - -
Cma10g00260 178 SUPERFAMILY Histone-fold 30 164 IPR009072 GO:0046982
Cma10g00260 178 MobiDBLite consensus disorder prediction 155 178 - -
Cma10g00260 178 Gene3D Histone, subunit A 22 167 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00260 K21751 DR1, NC2-beta; down-regulator of transcription 1 - csv:101214627 295.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00260 Cma-Chr10:1156363 Cma04g01239 Cma-Chr4:6346452 7.97E-21 dispersed
Cma10g00260 Cma-Chr10:1156363 Cma11g00251 Cma-Chr11:1269086 4.81E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g381 . Blo16g00147 . Bda15g00650 Bpe12g00503 . . . . . Cma10g00260 . Car10g00245 . Sed08g0326 . . Bhi02g00018 Tan09g1961 Cmetu02g0654 . . . . Cla06g01497 Cam06g1651 Cec06g1711 Cco06g1709 Clacu06g1617 Cmu06g1566 Cre06g2378 . . Cone13ag0008 Cone19ag0007 . . . . . . . Bda14g00905 . Bpe15g00553 Bma03g00879 . . Cmo10g00278 . . . . . . . . . . . . . . . . . . . . . Lsi06g01361 Csa01g00351 Chy02g02392 Cme02g01777
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00260 . 19 171 CCAAT-DR1 Transcription Factor Family AT5G08190 82.4 2.1e-63 239.2
Cma11g00251 . 1 156 CCAAT-DR1 Transcription Factor Family AT5G08190 81.4 2.1e-63 239.2
Cma10g00260 . 19 173 CCAAT-DR1 Transcription Factor Family AT5G23090 81.3 2.9e-65 245.4
Cma11g00251 . 1 155 CCAAT-DR1 Transcription Factor Family AT5G23090 81.9 3.7e-65 245.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35704 PF00808 CBFD_NFYB_HMF 3.60E-22 CL0012 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00260 Cma_Chr10 FPKM 28.411533 29.05924 26.838758 27.175989 32.458035 34.616631 28.904198 56.015587 66.337738 62.798946