Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00260 | ATGCCCTTCCCTCCACCTCGATCGCCTCCTTCGATTCCGTCTCGAAGGTTCGATATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCATCGCTTCCAAAAGCGACTATGACCAAAATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCCCAAGACCTTCTGATCGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATACGAACAACACAGGCACGAAACTATGAAATTTCCGCAGCAAGACTCGTTGAAAGGTGGGAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCGGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA | 537 | 46.55 | MPFPPPRSPPSIPSRRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1156363 | 1159837 | - | CmaCh10G002600.1 | Cma10g00260 | 301576 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00260 | 178 | PANTHER | PROTEIN DR1 HOMOLOG | 19 | 177 | IPR044255 | - | |
Cma10g00260 | 178 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 32 | 97 | IPR003958 | - | |
Cma10g00260 | 178 | MobiDBLite | consensus disorder prediction | 162 | 178 | - | - | |
Cma10g00260 | 178 | SUPERFAMILY | Histone-fold | 30 | 164 | IPR009072 | GO:0046982 | |
Cma10g00260 | 178 | MobiDBLite | consensus disorder prediction | 155 | 178 | - | - | |
Cma10g00260 | 178 | Gene3D | Histone, subunit A | 22 | 167 | IPR009072 | GO:0046982 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00260 | Cma-Chr10:1156363 | Cma04g01239 | Cma-Chr4:6346452 | 7.97E-21 | dispersed | |
Cma10g00260 | Cma-Chr10:1156363 | Cma11g00251 | Cma-Chr11:1269086 | 4.81E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35704 | PF00808 | CBFD_NFYB_HMF | 3.60E-22 | CL0012 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00260 | K21751 | - | csv:101214627 | 295.434 |