Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00267 ATGCCGACCGTAAGCGTCGGAAGAGATCGCCTATTTGCTGCCCTCGGAAGAACTTACTCTCAGGAAGAGTTTGAAGAGCTGTGCTTTAGGTTTGGGATTGAGCTTGATGACGTTACGACAGAGAAGGCGATCATGAGGAAAGAGAAGCATTTGGAAGAAGAAGCGGATGAAGATGAAGAAGTCATCTACAAGATCGAGGTCCCCGCTAACAGATACGATTTACTCTGTCTTGAAGGGCTTGCCCAAGCACTGCGCATTTTTAATAAGCAAGAAGAGACACCCAGATATAAATTATCCAATATCAGCAAGGAATCTATGCATAAAATGCATGTAAACCCGGAGACTTCTTTGGTTCGCCCTTACGTGGTTTGTGCTGTTTTGAGAGACATAACTTTTGATGAAGCAAGTTATAATAGCTTTATTGATCTGCAAGACAAACTTCATCAGAATATATGTCGACGGAGAACTCTTGTTGCCATCGGAACTCATGACCTGGATACACTTGAAGGCCCTTTCACCTATGAGGCTTTGCCACCATCAGCCATAAACTTTGTGCCACTGAAACAGACAAAAAGTTTCAGAGCTGACGAGCTAATGGAGTACTATAAATCAGATTTGAAGCTGAAGAAGTTCTTGCACATAATAGAAAAATCACCTGTATTTCCCGTTTTGTTTGATCGCAACAGAACTGTTTTGTCTTTACCACCAATTATCAATGGTGCACATTCGGCTATTACTTTGAAGACAAAGAATGTGTTTATTGAATGCACTGCAACTGATCTGACGAAGGCAAATATTGTCTTGAATACTATGGTAACTATATTTTCAGCACTGTGCAAAAAGAAGTTTGAAATTGAACCAGTTGAAGTGATATATTCAGATGGGAAGTCAAATATTTATCCAGAGTTATCTCTCTACAATATGGAAGTTTCTCTGTCTTATATCACTAACTGCATTGGAGTCCCATTGGAGGCAGAAGAGGTTACCAGTTTGTTAAATAGGATGCAATTGCAATCTGAGCAGTCGGTATCTGGTGACATGTCTAATGTAACTATATCTGTGCCCCCAACAAGGAGTGATGTGCTTCACCCATGTGATGTCATGGAGGATGTTGCCATAGCTTATGGGTTCAATAACATCCCAAAGAGTAAACCAGCATCTTTGCAGCCTCTACCATTAAATGAGTTCAGTGACCTTATCAGAGGAGAGATTGCAATGAGTGGATTCACGGAGGTACTTACGTGGATCCTATGTTCTTATAAAGAGAATTTTTCCATGTTAAAGCGTGAAGATGATAAATCTACTTGTGTTATCATTGGAAATCCCCGTTCAACAGATTTTGAGGTTGTACGAACCAGTCTTATGCCTGGTCTTTTGAAAACTGTTGGACATAATAAGGATCATCCAAAGCCCATAAAGATATTTGAAGTTGGTGATGTATCATTACTGGATGATGCAAAAGATGTTGGTGCAAGAAATCATCGTCATCTTGCTGCTCTATATTGCAGTGCCAATTCTGGATTTGAGTTGATTCATGGTTTGGTTGACAGAATAATGGAAGTCATAGGAGCTTCTTTTGTTACAGTTGGTGATGAAACTGGGTATTACATAAAGTGTTCAGATAATCCGGAGTTCCTTACAGGTAGACAAGCTCATATCATTTATAAAGGAAGGAAAATTGGCACCTTTGGCATTGTTCATCCCGAGGTTTTGAATAACTTTGACATTCCTGATCCATGTTCCTTTGTTGAACTTAACATCGAGAGCTTTTTATAG 1776 39.75 MPTVSVGRDRLFAALGRTYSQEEFEELCFRFGIELDDVTTEKAIMRKEKHLEEEADEDEEVIYKIEVPANRYDLLCLEGLAQALRIFNKQEETPRYKLSNISKESMHKMHVNPETSLVRPYVVCAVLRDITFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLEGPFTYEALPPSAINFVPLKQTKSFRADELMEYYKSDLKLKKFLHIIEKSPVFPVLFDRNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKANIVLNTMVTIFSALCKKKFEIEPVEVIYSDGKSNIYPELSLYNMEVSLSYITNCIGVPLEAEEVTSLLNRMQLQSEQSVSGDMSNVTISVPPTRSDVLHPCDVMEDVAIAYGFNNIPKSKPASLQPLPLNEFSDLIRGEIAMSGFTEVLTWILCSYKENFSMLKREDDKSTCVIIGNPRSTDFEVVRTSLMPGLLKTVGHNKDHPKPIKIFEVGDVSLLDDAKDVGARNHRHLAALYCSANSGFELIHGLVDRIMEVIGASFVTVGDETGYYIKCSDNPEFLTGRQAHIIYKGRKIGTFGIVHPEVLNNFDIPDPCSFVELNIESFL 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1186038 1195170 - CmaCh10G002670.1 Cma10g00267 301583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00267 591 Gene3D Bira Bifunctional Protein; Domain 2 391 591 IPR045864 -
Cma10g00267 591 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 591 IPR045060 GO:0004826|GO:0006432
Cma10g00267 591 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 1 591 - -
Cma10g00267 591 SUPERFAMILY Putative DNA-binding domain 5 93 IPR009061 -
Cma10g00267 591 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 89 IPR040659 -
Cma10g00267 591 Gene3D - 1 89 - -
Cma10g00267 591 Gene3D - 306 380 - -
Cma10g00267 591 SMART B5_2 305 377 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cma10g00267 591 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 1 591 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Cma10g00267 591 SUPERFAMILY Class II aaRS and biotin synthetases 374 590 IPR045864 -
Cma10g00267 591 CDD PheRS_beta_core 392 590 IPR041616 -
Cma10g00267 591 Pfam tRNA synthetase B5 domain 308 377 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cma10g00267 591 Gene3D - 99 304 IPR020825 -
Cma10g00267 591 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 380 587 IPR041616 -
Cma10g00267 591 Pfam B3/4 domain 119 279 IPR005146 GO:0003723|GO:0004826
Cma10g00267 591 ProSiteProfiles B5 domain profile. 303 382 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cma10g00267 591 SMART B3_4_2 118 280 IPR005146 GO:0003723|GO:0004826
Cma10g00267 591 SUPERFAMILY Putative DNA-binding domain 307 381 IPR009061 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00267 K01890 FARSB, pheT; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] - csv:101210257 1066.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00267 Cma-Chr10:1186038 Cma11g01712 Cma-Chr11:11325937 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g401 . . Bda06g00500 . . . . Bma12g00949 . . Cma10g00267 . Car10g00251 . . . . Bhi02g00039 . . . . . . Cla06g01510 Cam06g1665 Cec06g1726 Cco06g1722 Clacu06g1631 Cmu06g1580 Cre06g2390 . . . Cone19ag0020 . . . . . Blo15g00353 . . . . . . . Cmo10g00286 . . . . . . Cpe18g00729 . . . . . . . . . . . . . . Lsi06g01373 Csa01g00315 Chy02g02425 Cme02g01791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005974 1 2 1 1 0 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 2 2 2 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00267 Cma_Chr10 FPKM 15.752586 16.062355 9.013899 10.402879 12.777746 11.98701 12.531303 26.90626 26.715685 31.094212