Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00273 ATGGCTGTGGTGGCGCCGCCATTCTCCTGCCGTTACCGCGCTCCAACTATACGTAAACTAACTTCCAACTCAATTTTAAAATGTTCCTTTCTTTCAATTTCATCTCCAGAATTATCTTTCTCTGTCTCTGCTCAAACCCATCAAGCTCAATCCATCAAGCTGGTTTCTGAACTCTCACTTCTTGAAGAGATTTGCGAGCTCTGTGAAGCGGGTGATCTCAATGGAGCTCTTGATTTTCTTCAGAGAGGATGGAAGAACAATGGTGGTTATGATTTGGTGCAGAGAAAGGAAGCCATGGGTGTGTTGTTGCAGAAATGTGGGCAGTTTAAAGACGTTGAAATTGGCCGCGAACTTGATGAAATGTTGCGCGTCTCCTCTCAGTTCAGCGGCGACTTTGTTCTCAATACCCGTCTCATCACTATGTACTCCATGTGTGGGTATCCTTCGGATGCTCGATTGGTTTTTGATCGTTTGCAGAACAGGAAGTTGTTTCAGTGGAATGCACTTGTTAGTGGGTATGTTAGAAATGAACTGTACGACGAGGCGATTCACACTTTCATTGAGTTGATATCGGTAACTGAGTTTCAACCTGATAACTTTACACTGCCTTGCTTGATTAAGGCCTGTACAGGGAAGTGTGATGTTCGTTTGGGGCAATCGGTTCATGGGATGGCGGTGAAAATGGGATTCATCATGGATTTGTTTGTGGGTAATGCGATGATTTCGCTGTATGGAAAATGTGGCCTTGTAGATGAAGCCATCAAGGTGTTTGACAAAATGCCTGAACGAAACTTGATATCATGGAATTCGTTGATTTGTGGGTTTTCTGAGAATCAATTATGGCTGGAAGCTTTTGGTGCGTTTAGGAGGCTTTTGGAGAGTGGCGATGGCTTGATTCCGGATGTTGCTACAATAGTAACTTTGTTGCCTGTGTGTTCAGGAGAAGGAGATGTAGATATGGGAATGGTAATCCATGGGATGGCACTGAAACTGGGGCTTGTTCGTGAACTAATGGTATGCAATGCTTTGGTTGACATGTATTCAAAATGCGGTTATTTATCACAAGCAGCACTTTTATTTCATAAGATTGAGAACAAAAATGTAGTTTCTTGGAATTCCATGGTTGGTGCATATTCTAGGGAAGGATTCGTACATGAAACATTTGAACTGTTGAGAAAGATGTGGATGGAAGAAGAAATGATCAAAGTAAACGAGGTCACCATTTTGAATTTGTTACCTGCTTGTTTGGAAGAAACTGAACTGTTGAGTTTGAGGGAACTTCATGGATATTCACTCAGACATTGGTTTCAATACGACAAATCGATAAATAACGCGTTCATAGCCGCCTATGCCAAGTGTGGATCATTGAGTTCTGCTGAGCATGTCTTCTCTGGTATGGATACTAAGTCAGTTAGCTCTTGGAATGCAATCATAGGTGGATATGCCCACAATGGTGATCCACGAAAGGCTTTCGATTTTTATTTTCGGATGAGACGTTCGGGTTTCATTCTTGACTATTTTAGCATCAGTACCCTACTATTGGCTTGTGCCCGTTTGAGACATCTACATTATGGTAAAGAGATACATGGATTTGTTCTAAGGAATGGATTAGAGATGGATTCATTTGTAGCTGTCTCATTACTATCACTTTATATCCATTGTTCTAAACCATTCTATGCCAGAACTTTCTTTGAGAGGATCGAAGTTAAAAACTCAGTGTGTTGGAATGCAATGCTTTCTGGCTATTCTCAAAACGAACTTCCAAACGAAGCAATCTCTTTCTTTCGTCAAATGCTTTCTGAAGGACTCAAACCGAACGAGATCGCCATGGCGAGTGTCCTTGGGGCTTGTTCTGAGCTATCAGCCCTGAGTCTAGGAAGAGAAGTTCATTGCTTTGTCTTGAAAAACCGTCTTATAGAAGACAATTTCATTGCTTGTTCGCTCATGGACATGTATGCCAAAAGCGGCTGTTTGGGACGATCTCAACGAATATTTAACGGGTTAAACGAGAAAGAAGCAGCTTCATGGAACGTGATGATCACAGGATTTGGTGTGCATGGACAAGGTAACAAGGCCGTGGAGCTGTTTGAGGAGATGCAAAGATTAAATAAGCAGCCTGATAGGTTCACTTTTCTAGGAGTTTTGCAGGCATGTTGTCATGCTGGATTGGTGTCAGAGGGGCTAAATTATCTTGCTCAAATGCAGAGTTTGTACAAACTAGAACCGGAACTTGAACACTATGCTTGTGTGATCGACATGCTCGGTAGAGCAGGTCGACTAAATGAAGCTTTAAACCTCATAAATGAGATGCCTGAAGAACCAGATGCTAAAATCTGGAGCTCATTGCTCAGTTCTAGTAGAACTTACAGTGATCTAGCAATGGGAGAAAAAGCTGCTGAGAAGTTGCTTGCACTGGAAGCAAACAAAGCTGACAGCTACATTTTGCTCTCTAACTTGTATGCAACAGCAGGAAAATGGGATCTTGTGCGAATGGTGCGACAGAAAATGAAGGATCTCAACCTTCAGAAAGCGGCTGGCTGCAGTTGGATTGAACTTGGAGGTAAAATCTATAGTTTTATAGCGGGTAACGACTTGTCGATTCTCGATTCAAACAAGATTCGAAAGATGTGGAATAGACTGGAGAAACAGATTGTGGAAATTGGCTACACACCTGATTCTAGTTGTGTTCTTCATGAATTGGAAGAGGAGGAAAAGATTAAGATATTGAAGGAGCATAGTGAGAAGCTAGCAATTTCTTTTGGCTTCTTGAACACGAAAGAAGGCACTACGTTAAGAATCTGCAAGAATCTAAGAATTTGTAGAGATTGTCACAATGCAGCCAAGTTCATAAGCAAAGCCGCCAAAAGGGAGATCATTATTAGAGACAATAAGCGTTTTCATCACTTCAAAAATGGGATTTGTTCATGTGGAGATTATTGGTAG 2943 41.69 MAVVAPPFSCRYRAPTIRKLTSNSILKCSFLSISSPELSFSVSAQTHQAQSIKLVSELSLLEEICELCEAGDLNGALDFLQRGWKNNGGYDLVQRKEAMGVLLQKCGQFKDVEIGRELDEMLRVSSQFSGDFVLNTRLITMYSMCGYPSDARLVFDRLQNRKLFQWNALVSGYVRNELYDEAIHTFIELISVTEFQPDNFTLPCLIKACTGKCDVRLGQSVHGMAVKMGFIMDLFVGNAMISLYGKCGLVDEAIKVFDKMPERNLISWNSLICGFSENQLWLEAFGAFRRLLESGDGLIPDVATIVTLLPVCSGEGDVDMGMVIHGMALKLGLVRELMVCNALVDMYSKCGYLSQAALLFHKIENKNVVSWNSMVGAYSREGFVHETFELLRKMWMEEEMIKVNEVTILNLLPACLEETELLSLRELHGYSLRHWFQYDKSINNAFIAAYAKCGSLSSAEHVFSGMDTKSVSSWNAIIGGYAHNGDPRKAFDFYFRMRRSGFILDYFSISTLLLACARLRHLHYGKEIHGFVLRNGLEMDSFVAVSLLSLYIHCSKPFYARTFFERIEVKNSVCWNAMLSGYSQNELPNEAISFFRQMLSEGLKPNEIAMASVLGACSELSALSLGREVHCFVLKNRLIEDNFIACSLMDMYAKSGCLGRSQRIFNGLNEKEAASWNVMITGFGVHGQGNKAVELFEEMQRLNKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQSLYKLEPELEHYACVIDMLGRAGRLNEALNLINEMPEEPDAKIWSSLLSSSRTYSDLAMGEKAAEKLLALEANKADSYILLSNLYATAGKWDLVRMVRQKMKDLNLQKAAGCSWIELGGKIYSFIAGNDLSILDSNKIRKMWNRLEKQIVEIGYTPDSSCVLHELEEEEKIKILKEHSEKLAISFGFLNTKEGTTLRICKNLRICRDCHNAAKFISKAAKREIIIRDNKRFHHFKNGICSCGDYW 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1214871 1217813 + CmaCh10G002730.1 Cma10g00273 301589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00273 980 Gene3D Tetratricopeptide repeat domain 215 330 IPR011990 GO:0005515
Cma10g00273 980 Gene3D Tetratricopeptide repeat domain 520 622 IPR011990 GO:0005515
Cma10g00273 980 Gene3D Tetratricopeptide repeat domain 39 214 IPR011990 GO:0005515
Cma10g00273 980 Pfam E motif 789 851 IPR046848 -
Cma10g00273 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Cma10g00273 980 TIGRFAM PPR: pentatricopeptide repeat domain 573 607 IPR002885 -
Cma10g00273 980 TIGRFAM PPR: pentatricopeptide repeat domain 238 264 IPR002885 -
Cma10g00273 980 TIGRFAM PPR: pentatricopeptide repeat domain 747 772 IPR002885 -
Cma10g00273 980 TIGRFAM PPR: pentatricopeptide repeat domain 369 396 IPR002885 -
Cma10g00273 980 TIGRFAM PPR: pentatricopeptide repeat domain 675 707 IPR002885 -
Cma10g00273 980 TIGRFAM PPR: pentatricopeptide repeat domain 473 505 IPR002885 -
Cma10g00273 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 672 706 IPR002885 -
Cma10g00273 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Cma10g00273 980 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 418 968 - -
Cma10g00273 980 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 127 318 - -
Cma10g00273 980 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 321 415 - -
Cma10g00273 980 Pfam PPR repeat 747 772 IPR002885 -
Cma10g00273 980 Pfam PPR repeat 266 295 IPR002885 -
Cma10g00273 980 Pfam PPR repeat 369 395 IPR002885 -
Cma10g00273 980 Pfam PPR repeat 166 190 IPR002885 -
Cma10g00273 980 Pfam PPR repeat 238 264 IPR002885 -
Cma10g00273 980 Pfam PPR repeat 340 368 IPR002885 -
Cma10g00273 980 Gene3D Tetratricopeptide repeat domain 395 519 IPR011990 GO:0005515
Cma10g00273 980 Gene3D Tetratricopeptide repeat domain 623 859 IPR011990 GO:0005515
Cma10g00273 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Cma10g00273 980 Pfam PPR repeat family 674 720 IPR002885 -
Cma10g00273 980 Pfam PPR repeat family 469 518 IPR002885 -
Cma10g00273 980 Pfam PPR repeat family 570 617 IPR002885 -
Cma10g00273 980 Pfam DYW family of nucleic acid deaminases 888 980 IPR032867 GO:0008270
Cma10g00273 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 397 IPR002885 -
Cma10g00273 980 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 127 318 - -
Cma10g00273 980 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 418 968 - -
Cma10g00273 980 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 321 415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00273 - - - cmo:103494078 1582.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00271 Cma-Chr5:1151708 Cma10g00273 Cma-Chr10:1214871 1.39E-14 dispersed
Cma10g00273 Cma-Chr10:1214871 Cma13g00591 Cma-Chr13:5857946 2.86E-106 dispersed
Cma10g00273 Cma-Chr10:1214871 Cma17g01185 Cma-Chr17:8199730 3.61E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g410 . . . . . . . . . . Cma10g00273 . . . . . . Bhi02g00048 . . . . . . Cla06g01516 . . . . . . . . Cone13ag0018 . . . . . . . . . . . . . . Cmo10g00292 . . . . . . . . . . . . . . . . . . . . . . . Chy02g02418 Cme02g01797
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011822 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 0 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00273 Cma_Chr10 FPKM 0.321781 0.611913 0.744214 0.868618 3.627805 3.594969 4.391195 1.598586 1.452311 1.208936