Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00281 ATGCAAGACATCCACTCGATCGCCGGAGGAAGTCGGTTGTTCGGTGGCGGGGGTGACCGTCGTCTGAGGCCGCACCTCCACCACCACCAAAACCACCAGGCCTTGAAGTGCCCAAGGTGTGATTCTCTCAATACAAAGTTCTGTTATTACAATAACTACAATCTCTCTCAGCCTCGTCACTTCTGCAAGAGCTGCCGACGCTACTGGACTAAAGGTGGCGTCCTCCGTAACGTTCCTGTCGGAGGCGGTTGCCGGAAAACCAAACGCTCCTCCTCCTCCTCCAAGTCCACTCCCGATGTGGCGACGACGTCTCCTCCTCCTCCTCCTCCTCTTCGCGAACGTAAATCCACCTCTCATTCCAGCAGCGAGAGCTCCAGCCTAACCGCTACAACCACCACGGCTGCCGCCGCGGCGACAGAGGCCGTCTCTGCTCCGTCCTCCATTTCAACGTCGGCTCTATTGAGCGTACAGGATAGGAAATTGTTCCCCGCTCCGACTACAAACCCTAATTTCGAAGGTGCGGCGGGTGCGGGGACGGACTGCGGGATTTTCTCGGAAATCGGAAACTTCACGAGCTTGATCACATCGTCTAACGAGACATTGGCGTTCGGATTCGGCAATATGGGGGACGTGACGCCGTTTGCGATGAATCATCCGTTTCAAAATCAAGCGGCGAATCAATGGCCGTCACAGAGAATGATGAACGGTAACGATGAGGTGAAGATGCAAGAGATCACAGGCGGAGGAGGAGGGTACATGGATCAGACGGCACAGGTGGATCCATCAGCAGGGCTTCAGAATAGCAGATCAAGCATCATTGGATTCGGACCGTTAGATTGGCAATCAAACGGAGATCATCAAGCTCTGTTTGATCTCCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAGTGGAGTAGTGATCAAGATCAGCCTAATCTGTACCTCCCGATGAGGAGGAGGAGGAGGAGGATGATGACGTGGAGAATATTGGGTGACGTGGGGGCCACGTATCTCTCTACAAAGGACGAGAATATGAAGGTTTTTTCTCTGGGCTTCGTCTTTTGGTTTCCACGTCACTTGAAACAGTATTACTGTGCTGTCACTGTCACTGTCACTGTCACTGTCACTGTCACTGTCGCTGAGTCTTGTGATTGGATTGGTAAGTACTCTGCTGCAATGGTCCTGGAATGGGAATTGGCTTGCTTGATCAAGCGAGACCTGACCTGTGAACTGTCATTTTCGTTGTCTCTCCCTTCTTGCTTCTACACAACATTCAACATTCATGATTCCAACTGCGATCTACCCTTCGATTTGGACTTGGCATATGGTGGTGGCTGA 1344 52.08 MQDIHSIAGGSRLFGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSSKSTPDVATTSPPPPPPLRERKSTSHSSSESSSLTATTTTAAAAATEAVSAPSSISTSALLSVQDRKLFPAPTTNPNFEGAAGAGTDCGIFSEIGNFTSLITSSNETLAFGFGNMGDVTPFAMNHPFQNQAANQWPSQRMMNGNDEVKMQEITGGGGGYMDQTAQVDPSAGLQNSRSSIIGFGPLDWQSNGDHQALFDLPNAVDQAYWSQNQWSSDQDQPNLYLPMRRRRRRMMTWRILGDVGATYLSTKDENMKVFSLGFVFWFPRHLKQYYCAVTVTVTVTVTVTVAESCDWIGKYSAAMVLEWELACLIKRDLTCELSFSLSLPSCFYTTFNIHDSNCDLPFDLDLAYGGG 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1252523 1254420 + CmaCh10G002810.1 Cma10g00281 301597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00281 447 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Cma10g00281 447 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
Cma10g00281 447 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 305 IPR045174 GO:0003700|GO:0006355
Cma10g00281 447 MobiDBLite consensus disorder prediction 1 21 - -
Cma10g00281 447 PANTHER DOF ZINC FINGER PROTEIN 4 16 305 - -
Cma10g00281 447 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Cma10g00281 447 MobiDBLite consensus disorder prediction 79 133 - -
Cma10g00281 447 MobiDBLite consensus disorder prediction 86 100 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00281 Cma13g00889 CCT
Cma10g00281 Cma11g00228 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00281 Cma-Chr10:1252523 Cma13g00889 Cma-Chr13:7183557 1.90E-32 dispersed
Cma10g00281 Cma-Chr10:1252523 Cma11g00228 Cma-Chr11:1151250 2.34E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35706 PF02701 zf-Dof 7.10E-33 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00281 - - bhj:120071666 452.595