Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00288 ATGGAAGTCAATACCCACAGTAATATGTTACACAAAATTCTCTGTCGACAGCAAAAAATTGCAGTTTTAGCACTTCTGATCTTTACAGCTTTCTATTCAGCTGCTTTCTATTCAGGGGCTTACGATCCATTGGATCCAAATGGAAACATAACAATCAAATGGGATATAGTATCTTGGGCGGCAGATGGATATGTTGCTGCAGTGACAATGAACAATTTTCAGATGTACCGCCATATTAATGCACCAGGATGGACTCTAGGCTGGTCGTGGGCCAAGAAAGAAGTAATATGGTCGATGGTGGGAGCTCAAACAACAGAGCAAGGAGATTGTTCCAAGTTCAAAGGAAATGTGCCTCACTGCTGCAAGAAAACCCCAGTAGTTGTTGATTTGCTCCCCGGTGTTCCTTACAATCAGCAATTCTCAAATTGCTGCAAGGGTGGAGTGTTGGCATCTTGGGGACAGGATCCAGTAGGTTCGGTCTCCGCCTTTCAGGTGAGTGTTGGGCTAGCCGGCACTTCAAACAAAACTGTGAAATTGCCAAAGAACTTCACCCTGCTCGGTCCAGGACCAGGCTACACATGTGGACCGGCAAAGGTTGTGCCTTCTACAGTCTTCCTCACTCCTGATCGCCGCCGGAAAACTCAAGCACTGATGACATGGAATGTAACCTGTACTTACTCACAATTTCTGGCCTCTAAGAACCCAACTTGCTGCGTATCACTTTCAACTTTCTATAATGAGACGATCACTTCTTGCCCAACCTGCGCCTGTGGCTGCCAACACAAACATAATTGTATAAAGAGTGGCTCAAAGCTATTGCACAAGGAAGGACTAAACACTCCTAAAAAGGATAACACACCTTTACTACAATGCACTTATCACATGTGTCCTATTCGAGTACACTGGCACGTAAAGATTAATTACAAGGATTATTGGCGTGTAAAGGTTGCTGTCACTAACTTCAACTATAGGATGAACTATACACTGTGGACACTGGCAGTGCAGCATCCAAATCTGAACAATGTAACTCAAGTCTTTAGTTTTGACTACAAGCCCCTTGTTCCCTATGAATCCATCAACGATACTGGCATGTTCTATGGCATGAAATTCTACAATGATCTATTAATGGAAGCAGGGCCATTTGGAAATGTACAATCTGAAGTACTAATGAAGAAGGATAAGGATACCTTTACCTTCAAGCAGGGTTGGGCATTTCCTAGAAAAGTATACTTCAATGGCGACGAATGTCAGATGCCACCACCAGAATCTTACCCGTTTCTACCCAACTCTGCGCCTGGAGGCTCGAGTGCAGTAGCCAAATTCACCGCCACTTTGTTTTTGATAGTCTGGTTTTTGTTGTAA 1362 43.83 MEVNTHSNMLHKILCRQQKIAVLALLIFTAFYSAAFYSGAYDPLDPNGNITIKWDIVSWAADGYVAAVTMNNFQMYRHINAPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPVVVDLLPGVPYNQQFSNCCKGGVLASWGQDPVGSVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNETITSCPTCACGCQHKHNCIKSGSKLLHKEGLNTPKKDNTPLLQCTYHMCPIRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDKDTFTFKQGWAFPRKVYFNGDECQMPPPESYPFLPNSAPGGSSAVAKFTATLFLIVWFLL 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1279530 1282243 + CmaCh10G002880.1 Cma10g00288 301604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00288 453 Pfam COBRA-like protein 64 227 IPR006918 GO:0010215|GO:0031225
Cma10g00288 453 PANTHER COBRA-LIKE PROTEIN 30 450 - -
Cma10g00288 453 PANTHER PROTEIN COBRA 30 450 IPR006918 GO:0010215|GO:0031225
Cma10g00288 453 PIRSF COBRA 11 453 IPR006918 GO:0010215|GO:0031225
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00288 Cma11g00220 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00288 Cma-Chr10:1279530 Cma11g00220 Cma-Chr11:1109507 0 dispersed
Cma10g00288 Cma-Chr10:1279530 Cma10g00289 Cma-Chr10:1281832 0 tandem
Cma01g00420 Cma-Chr1:2113623 Cma10g00288 Cma-Chr10:1279530 0 wgd
Cma10g00288 Cma-Chr10:1279530 Cma11g00218 Cma-Chr11:1105995 0 wgd
Cma10g00288 Cma-Chr10:1279530 Cma13g01062 Cma-Chr13:8051454 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00288 - - cmo:103494059 886.33