Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00289 ATGAAGGCTCGGCGTTTCGCTTCCACTGGATCCGTCGCCGGACTTACTGGCTTTGCCGTCTTGCTTCACTTTCTACTTTCCAGCTTCAGTTTCACTGCAACAGAAGCCTATGATGCACTTGATCCAAACGGGAACATCACAATCAAGTGGGATGTCATGAGCTGGACTCCAGATGGCTATGTCGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTGCAGCTCCAGGTTGGACATTGGGGTGGACATGGGCAAAGAAAGAAGTAATTTGGAGCATGATGGGAGCCCAAACAACAGAACAGGGCGACTGTTCAAAGTTCAAAGGAAATATTCCTCATTGCTGCAAGAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACTCCTTACAATCAGCAGATTGCAAATTGCTGCAAAGGTGGAGTCATAAACTCATGGGCCCAAGACCCAGCCAATGCAGCAAGTTCATTTCAAGTCAGTGTTGGTGCTGCAGGATCAAGTAACAAAACTGTCAAACTCCCCAAAAACTTCACCCTGAAAGCCCCAGGACCTGGATACACTTGTGGGCCAGCAAAGATTGTGAAGCCAACCAAATTTGTTTCTGGAGATAAAAGAAGAATAACTCAAGCTTTGATGACGTGGAATATTACATGCACCTATTCTCAGTTCCTCGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACTATAGTCAACTGCCCAACCTGCACTTGCGGATGTCAAAACAACACGGCAGGTTCTGGGAGCTGTGTGGATCCGGATTCTCCATATTTAGCTTCAGTAGTATCAACTCCTGATAAATCAGGCAGCAATGCACCCTTGGTTCAGTGTACCAGCCACATGTGCCCGATTCGAGTCCATTGGCACGTGAAGCTGAATTATAAGGATTACTGGAGGGTGAAGATCACAATCACCAATTTCAATTACAGAATGAACTACACACTCTGGAATCTCGTGGTGCAGCATCCCAATTTTGATAACATTACTAAATTATTCAGCTTTAACTACAAGTCGTTGAGCCCATATGGTGACCTAAATGATACTGCGATGTTGTGGGGAGTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGCCCTCTTGGTAATGTGCAATCTGAGCTCCTATTTCAGAAAGACCAGAACACTTTCACATTCGACAAGGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGCTGCCACCTCCAGATGCCTATCCTTATTTGCCAAATGCCAGTTCCAGACCAGCTATATCTCTACTTATGACCATCTTAATATCTTTGACATTACTTTCATCAAGCACGGGAAGAAGGACCACTGATTACAACAAAAACCAGACTATCAAAAACAAAGTGGCGGTGAATTTGGCTACTGCACTCGAGCCTCCAGGCGCAGAGTTGGGTAGAAAC 1467 44.85 MKARRFASTGSVAGLTGFAVLLHFLLSSFSFTATEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIAAPGWTLGWTWAKKEVIWSMMGAQTTEQGDCSKFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQVSVGAAGSSNKTVKLPKNFTLKAPGPGYTCGPAKIVKPTKFVSGDKRRITQALMTWNITCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVDPDSPYLASVVSTPDKSGSNAPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVLPPPDAYPYLPNASSRPAISLLMTILISLTLLSSSTGRRTTDYNKNQTIKNKVAVNLATALEPPGAELGRN 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1281832 1285147 - CmaCh10G002890.1 Cma10g00289 301605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00289 489 PIRSF COBRA 10 454 IPR006918 GO:0010215|GO:0031225
Cma10g00289 489 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0031225
Cma10g00289 489 PANTHER COBRA-LIKE PROTEIN 10 450 - -
Cma10g00289 489 PANTHER PROTEIN COBRA 10 450 IPR006918 GO:0010215|GO:0031225
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00289 Cma13g01062 CCT
Cma10g00289 Cma13g01062 ECH
Cma10g00289 Cma11g00218 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00289 Cma-Chr10:1281832 Cma11g00218 Cma-Chr11:1105995 0 dispersed
Cma11g00219 Cma-Chr11:1109487 Cma10g00289 Cma-Chr10:1281832 2.72E-06 dispersed
Cma10g00288 Cma-Chr10:1279530 Cma10g00289 Cma-Chr10:1281832 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00289 - - csv:101213424 893.649