Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00300 ATGGATGTGCATGGCTCTGGAACTAGGAAATTCGACGGAGGCAATGGCGATTCGCGGAGGGTAGGGGTTTTGTACGACGAGAGGATGTGCAAGCATCACACGCCCGACGGAGATTACCATCCTGAGAATCCCAATCGAATTAGGGCCATTTGGAACAAGCTACAGAGCTCCGGCATTCTTCAGAGGCATGATCTTAAACTGGCTCGTTTCCTCTTCAGGTGTGTGGTCTTGAATGGGAAAGAAGCAGAAGATAAGCATATTTTGGCAGTACACTCCAAAAACCATGTTGACTTGATTAAGAAAATAAGCTCCAAAGAGTTGGATTCACGAAGAGATAAGATTGCCTCACAACTTAACTCCATATACTTTAATAAAGGATCATCAGAAGCTGCTTATCTAGCTGCTGGTTCTGTCATAGATGTTGCTGAAAGAGTAGCTCAAGGAGATTTAGATTCCGGAATTGCCATTGTGAGGCCACCGGGTCATCATGCCGAACATGATGAAGCTATGGGGTTCTGTTTGTTCAACAATATAGCTGTGGCAGCAAGCTTTATTTTGAATGAAAGACCAGATTTGGGTATTAAGAAGATATTAATTGTTGATTGGGATGTTCATCATGGCAATGCAACACAAAAGATGTTCTGGAGGGATCCCCGCGTTTTGTTCTTCTCCGTTCACCGGCACGAGTTTGGAAGTTTTTATCCCGCCACAGATGATGGTTACTATACCATGGTTGGAGAAGGACCAGGAGCAGGATATAATATAAATGTCCCTTGGGAGAATGGACAATGTCGGGATGCTGATTACCTAGCTGTTTGGGACCATATCTTGCTTCCGGTTGCTAAGGAATATAATCCTGATATGATCATAGTCTCTGCCGGATTTGATGCAGCTGTTGGTGATCCTCTAGGTGGTTGCTGTGTCACACCGTATGGATACTCAATTATGTTGAAAAAGGCAAGTTTGATGAATCTTGGTCAAGGAAAGATTGTATTGGCATTGGAAGGGGGATATAATCTTGATTCTATAGCAACTTCAATGCTTGCCTGTGCGGAACTTCTGGTTGATGGAACAACTATGAACAATTCTTCAGAGACTTGTCCATTTGAGTCAACATGGCGAGTGATCCAAGCAGTTCGCCGAGAATTGAGTCCTTTTTGGCCAATGCTTTCGGATGAACTACCAGATAATTTAACCAGTAAAAAAGTGCCAGTCCCGGAGGTATTGCTTTCAAGCTCTGATTCGGAGGATGAAGCTTCCGATTCTCGATTAAAAAGCCTCGAGGAAATTCTTCAGGGTATCACACTTTCACAAATGGAAGTTAAGGAAGACAATCAGGGTCAAGCGGTTAATGTTACTATCCCTTGGAGATTGGAGCTCTCAAAAACTGATATCTGGTATGCTTCATATGGATCAAATATGTGGCGCCCGAGGTTCCTCTGTTATATCGAAGGAGGACAGGTTGAGGGTATGAAAAAACCGTGTACGGGTTCAATGGATAAGACACCACCAAAAGAGATGCTGTGGAAAACTTTTCCTCACCGTCTATTTTTCGGCCATGAATATACCAATACATGGGGCCAAGGAGGAGCTGCTTTTCTTCATCCTGCAAGCAACAGTGATGAGAAATCTTTCCTGTGCTTGTATAGAATTACGCTAGAGCAATTCAACGATGTTTTGTATCAAGAAAACAGTGGAAGTGGCTTCCTTTCTGATAACCCTTTATTGGATATAGCTAATTTGAACAAACTCACAGGCAACGCTTCCACATCTATTGAGATTTCAACAGGGCAAGGATGGTACCACAACCTTGTATACTTGGGGGAAGAACACGAACTTCCAATAGTAACTATGACATGTTCGCATTTGGATATGGAAGACTTCAAATCTGGAAAGGTTCCTCTCTGTGCACCAGCCAAAGGGTACGTTGATACCCTTGTTAAAGGCCTTGCAGCAGGACCACTTTCGAAAGAGGAAGCTTTGGTTTACATTCAGAAGGCTTTAACTAAGCCACTGTAA 2019 43.24 MDVHGSGTRKFDGGNGDSRRVGVLYDERMCKHHTPDGDYHPENPNRIRAIWNKLQSSGILQRHDLKLARFLFRCVVLNGKEAEDKHILAVHSKNHVDLIKKISSKELDSRRDKIASQLNSIYFNKGSSEAAYLAAGSVIDVAERVAQGDLDSGIAIVRPPGHHAEHDEAMGFCLFNNIAVAASFILNERPDLGIKKILIVDWDVHHGNATQKMFWRDPRVLFFSVHRHEFGSFYPATDDGYYTMVGEGPGAGYNINVPWENGQCRDADYLAVWDHILLPVAKEYNPDMIIVSAGFDAAVGDPLGGCCVTPYGYSIMLKKASLMNLGQGKIVLALEGGYNLDSIATSMLACAELLVDGTTMNNSSETCPFESTWRVIQAVRRELSPFWPMLSDELPDNLTSKKVPVPEVLLSSSDSEDEASDSRLKSLEEILQGITLSQMEVKEDNQGQAVNVTIPWRLELSKTDIWYASYGSNMWRPRFLCYIEGGQVEGMKKPCTGSMDKTPPKEMLWKTFPHRLFFGHEYTNTWGQGGAAFLHPASNSDEKSFLCLYRITLEQFNDVLYQENSGSGFLSDNPLLDIANLNKLTGNASTSIEISTGQGWYHNLVYLGEEHELPIVTMTCSHLDMEDFKSGKVPLCAPAKGYVDTLVKGLAAGPLSKEEALVYIQKALTKPL 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1356186 1361970 - CmaCh10G003000.1 Cma10g00300 301616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00300 672 Gene3D - 458 668 - -
Cma10g00300 672 PRINTS Histone deacetylase superfamily signature 159 182 IPR000286 -
Cma10g00300 672 PRINTS Histone deacetylase superfamily signature 286 296 IPR000286 -
Cma10g00300 672 SUPERFAMILY Arginase/deacetylase 19 390 IPR023696 -
Cma10g00300 672 Gene3D Histone deacetylase domain 15 403 IPR037138 -
Cma10g00300 672 PANTHER BNAA09G05590D PROTEIN 18 621 - -
Cma10g00300 672 PANTHER HISTONE DEACETYLASE 18 621 - -
Cma10g00300 672 Pfam Histone deacetylase domain 40 352 IPR023801 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00300 K11406 HDAC4_5; histone deacetylase 4/5 [EC:3.5.1.98] - csv:101207819 1140.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00300 Cma-Chr10:1356186 Cma11g00890 Cma-Chr11:4539408 7.32E-73 dispersed
Cma10g00300 Cma-Chr10:1356186 Cma10g00102 Cma-Chr10:417113 1.82E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g359 Blo04g00809 . . Bda15g00544 Bpe12g00667 . . . . . Cma10g00300 . Car10g00285 . . . . . . . . . . . . . . . . . . . . Cone13ag0296 . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00322 . . . . . . . . . . . . . . . . . . . . . . Csa01g00287 Chy02g02448 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010219 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00300 Cma_Chr10 FPKM 14.912684 19.46279 19.013948 18.834217 35.465725 28.881142 37.725605 8.30274 8.042799 7.992575