Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00305 ATGGCGACGCCGTTGACAGGGCTACATCACAGGGACGGTGGCGGAGGGGTGGCTTTTTTGGCTAATTCTGTTAATAAAATGGATTCCGCGTCGTCTCCGTCGTCGCCGAATGATTGTTTGAGGAACTCCGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTCCACAAAGCTATTCGCAAAGAGCTCGATACGCTACACCGGCTGGCCATGGCATTTGCCATCGGCCAGAGAGCAGATATTCGGCCGCTATTTGAACGATATCATTTTCTTAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCACTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGTGAAAGCAATCTATTTGATCAACTTTTTGAGCTTCTTAATTCCAGTACACGAAATGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGTCAGCACATGGCCAAGGAAGAAGAGCAGGTATTTCCCTTGCTTGTAGAAAAGTTCACATTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGCTTTCTTCATCTGTTTCACCTGATGAATTTCAGGATCTACAGAAATGTTTTACTAATGTAGTCCCCGAGGAAAAGCTTCTTCAACAGGTCATATTTACTTGGATGGAAGAGAGAAGTTGTGACACCGTATCAACAAGTTGCTTTGATGATTCTCCAGTTGTACATCATTCAGATCCTACTACTCATACATCAAATCATCAAACAGGAAATGTAAATTGTGCTTGTGCATTTACCAGCCATGGGAAAAGGAAATATTTGGAGTCCAGTTCTGATACATCAGATTATGTGGTAACTCATCCAATTAATGAAATATTGTTTTGGCATAATGCCATCGAAAGGGAGTTGAATGACATAGCTGAGGAGGCTAGGAAGATACAACTTTCTGGAAAGTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATTTATCATAGTATTGCTGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTTTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGTTGCCTGATTGAAAATATTCAAAGGGCAGGGGCTAGTTCTACTTCAAGAGATGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATAGATACCATTAAGAGGCACTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTTAGTTGCAAGAGACAACGGGAATTGTTGTATCAAAGTTTGTGTATGATGCCTTTGAAATTGATTGAACGAGTCTTGCCATGGCTGGTAGGATCATTAAAAGAAGATGAGGCTAGAGATTTTCTCAAGAACATGCAGTTGGCAGCTCCAGCTAAAGATACTGCTTTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAGGCCCGCAATAATGGTTTGTGCATATCTTCAAGAGCAGTTGGCTGTTGTGCAGTTAAAAGGTTACCTGATATTGAAGAAGACACTGTTCAATCGTCTTGTTCATGTGCCCCTGCATTGATTGCAAGGGAAGGTCCAAAATCCGATCCAGAAGAAACTAATGTTCATGTTAAGAGGCCAGCCATACGGAATGTTCCTATGTCATGCAGACTTTGTGATGGCCGTATTGCTTCAGAGACTGTTAATGTCCAGCAACAATGTTGTAGTGATCAGTCCTGCCGTGTTCCAGCTTTAGGAGTAAATAGCAAGACTCTGGGGTTAAGTTCTATTTTCTCATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTGTGCACCTTCTCTCAATTCCAGCCTTTTTTCATGGGAAACGGATAATGCCACTTCTGATGTTGGGTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCGATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTGGTGATTGTGATGAAACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATCGCGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCTCTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCATATACGCTCGACCATAAGCAGGAGGAAAAACTATTTGAGGATATTTCATGTGTTCTCTCTGAGATTTCACTCCTCCATGAAAGTCTGCATGAGGTTCAGTTAGATGAGAGTTATTCTAGAAGTGATGTAGGTTCTGTTAATATGGCGGGGAAGGATTGTAATAGAATGTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACCCTGGATCAGCATATTTTTAGGGAAGAACTTGAACTTTGGCCGCTGTTTGGGAAACACTTTTCCGTCGAGGAGCAAGACAAAATAGTTGGTCGTATTATTGGGACAACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCTGCACTTACTCAAGACGAACAGAATACCATGATGGATACGTGGAAGCAGGCCACGAGAAACACCATGTTCAACGAATGGCTCAACGATTGTTGGAGAGGGACTGCGTCGTCTACTTTAAACGGTGAAACATCGGAAGCTTGTGTTGCTGAGAAAGATTCTGGGCTCATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGCTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTTGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTGCCTCAAGGAAATCTAGAAGACAATTCCAATGGTGAAGATGCAGCAGGACGAACACCATCTTTTCGCTGTGTGGAGAAAAAAATATTTGGGTGTGAACATTACACTAGAAACTGCAAGCTTCTTGCTGCTTGCTGCGGAAAGTTATTTACTTGTCGATTTTGTCATGATAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGCATGAACTGTCTAACAATTCAATCAGTTGGGCCAGTATGCACTACACTTTCTTGCAATGGATTATCAATGGCGAAATACTATTGCAATATTTGTAAATTTTTTGATGATGAAAGGACTGTGTATCATTGCCCATTTTGCAACTTATGTCGTGTTGGGAAGGGTCTTGGAATCGATTTTTTCCATTGCATGATTTGCAATTGTTGCCTTGGAATAAAGCTGGAGAGTCACAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCTAGTGCAACAGTCAGACCGCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCGTACACTTGCAGCCATTATACCTGTCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTATATTTTGGTATGCTTGATGCCTTGTTGGCCACTGAGGAGCTGCCAGAGGAGTACAGGGAACGTTGCCAGGACATACTGTGCAATGACTGTGAACGGAAAGGCACGTCGCGGTTCCATTGGCTCTATCATAAATGCGAGTGCTGCGGATCATACAACACCCGGGTAATCAAGAACGATGCCGCATATGCTGAATGCCCTTCTTCCAATCAATAA 3774 42.13 MATPLTGLHHRDGGGGVAFLANSVNKMDSASSPSSPNDCLRNSEPQSPILIFLFFHKAIRKELDTLHRLAMAFAIGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDQLFELLNSSTRNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLVEKFTLEEQASLVWQFFCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCFTNVVPEEKLLQQVIFTWMEERSCDTVSTSCFDDSPVVHHSDPTTHTSNHQTGNVNCACAFTSHGKRKYLESSSDTSDYVVTHPINEILFWHNAIERELNDIAEEARKIQLSGKFSNLSTFNERLQFIAEVCIYHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNEFSCLIENIQRAGASSTSRDEFYVKLCSHADQIIDTIKRHFHNEEVQVLPLARKHFSCKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDFLKNMQLAAPAKDTALVTLFSGWACKARNNGLCISSRAVGCCAVKRLPDIEEDTVQSSCSCAPALIAREGPKSDPEETNVHVKRPAIRNVPMSCRLCDGRIASETVNVQQQCCSDQSCRVPALGVNSKTLGLSSIFSSKSMRSLSPSSCAPSLNSSLFSWETDNATSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLGDCDETFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVQLDESYSRSDVGSVNMAGKDCNRMYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATRNTMFNEWLNDCWRGTASSTLNGETSEACVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQGNLEDNSNGEDAAGRTPSFRCVEKKIFGCEHYTRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQSVGPVCTTLSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLATEELPEEYRERCQDILCNDCERKGTSRFHWLYHKCECCGSYNTRVIKNDAAYAECPSSNQ 1257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1377743 1387802 - CmaCh10G003050.1 Cma10g00305 301621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00305 1257 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 31 1253 - -
Cma10g00305 1257 SUPERFAMILY CHY zinc finger-like 1002 1064 IPR037274 GO:0008270
Cma10g00305 1257 CDD Hr-like 51 177 - -
Cma10g00305 1257 Pfam Zinc-ribbon 1184 1241 IPR039512 -
Cma10g00305 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1130 1181 IPR013083 -
Cma10g00305 1257 Pfam Hemerythrin HHE cation binding domain 53 179 IPR012312 -
Cma10g00305 1257 Pfam Hemerythrin HHE cation binding domain 661 824 IPR012312 -
Cma10g00305 1257 Pfam Hemerythrin HHE cation binding domain 309 443 IPR012312 -
Cma10g00305 1257 CDD RING-H2_Pirh2 1136 1179 - -
Cma10g00305 1257 Gene3D nmb1532 protein domain like 656 886 - -
Cma10g00305 1257 ProSiteProfiles Zinc finger RING-type profile. 1137 1179 IPR001841 -
Cma10g00305 1257 Coils Coil 318 338 - -
Cma10g00305 1257 ProSiteProfiles Zinc finger CHY-type profile. 1001 1070 IPR008913 GO:0008270
Cma10g00305 1257 ProSiteProfiles Zinc finger CTCHY-type profile. 1073 1136 IPR017921 -
Cma10g00305 1257 Pfam CHY zinc finger 1008 1083 IPR008913 GO:0008270
Cma10g00305 1257 Gene3D nmb1532 protein domain like 46 196 - -
Cma10g00305 1257 Gene3D nmb1532 protein domain like 312 459 - -
Cma10g00305 1257 SUPERFAMILY RING/U-box 1136 1182 - -
Cma10g00305 1257 CDD Hr-like 663 823 - -
Cma10g00305 1257 PANTHER CHY ZINC FINGER PROTEIN 31 1253 - -
Cma10g00305 1257 SUPERFAMILY Zinc hairpin stack 1074 1130 IPR037275 -
Cma10g00305 1257 CDD Hr-like 313 441 - -
Cma10g00305 1257 Gene3D - 1208 1249 - -
Cma10g00305 1257 SMART ring_2 1137 1178 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00305 Cma11g00284 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00172 Cma-Chr10:779481 Cma10g00305 Cma-Chr10:1377743 2.21E-11 dispersed
Cma10g00305 Cma-Chr10:1377743 Cma20g00524 Cma-Chr20:2526704 3.88E-52 dispersed
Cma10g00305 Cma-Chr10:1377743 Cma11g00284 Cma-Chr11:1408956 0 wgd
Cma10g00305 Cma-Chr10:1377743 Cma04g01497 Cma-Chr4:7606180 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00305 K16276 - csv:101215023 2351.63