Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00309 ATGTTGGGAACTGCGTTGCAGTTTGGGGGAATCAAAGGTGAGGATCGGTTTTATATTCCGGTGAGGGCACGGAAGATTTATAATCAGCAAAAGCCATCGAGGAGACCTACCAAGACCGATGAAACTGAGACTCCATCGAGTAAAGTTGTGGCTTCTACTACAACGCCTTCTAAGCCACTAACTCCTCAGTCTAAGAGCAACTTAGAGAGATTCTTGGACGCCACAAAGCCTTCAGTTCCAGCGCAGTACTTCTCCAAGACAACTATGAGGGGTTGGAGGACTTGTGATATTGAATTTCAACCTTATTTCGTTCTGAATGATCTGTGGGAGTCTTTCAAGGAGTGGAGTGCATACGGCGCTGGAGTTCCTTTAGTACTCAATGGAGGTGACTCTGTTGTTCAATATTACGTTCCTTATTTGTCTGGTATTCAAATATATGGCGAATCTGCTGCATTGAGATCAGATTCTAAGTCCAGGCTGGCTAATGAGGACAGTGATCTTGACTCTTCTAGAGATACAAGCAGCGAGGGAAGCATTGACTATGAATTTGGTAAAAGCTGTAACTTATCCAGAGAACAGTGGGTTCATCACCATTTAGCTTGTGATAGCGCTCTTACAATTAGAAAGACGTCTTTAAGAGATGAGCATAGCACAAGACAAGAAGGTTTTTCGAGTGACGATGGGGATGCAGAATATCCTCGGAGTGGTTTGCTCTTTCAGTTTCTGGAGCAAGATCTTCCTTATCAACGTGTACCGTTGGCTGATAAAATATTTGATCTTGCTTACCAATTTCCTGGTTTGAAAACTTTAAGAAGTTGTGATATCCTGCCAGCCAGTTGGATCTCTGTAGCATGGTACCCAATATACCGTATACCCACTGGTCCCACATTGAAGGATTTGGATGCTTGCTTCCTAACATATCATTCCCTTTCCACACCCATAAGAGGTAATGGACATGGTCAAGCACCAGCAATGATATATCCAAATGACAACGATGGTATCCCAAAGGTCTCCTTGCCTGTCTTCGGATTGGCTTCTTATAAGCTGAAAGGCTCAATATGGGCGCAAAATTGTGTCAAAGAGAATCAAATGGAAAATTCCCTCATGCAGGCGGCAGAGAAGTGGCTGAGGCGCCTTCAGGAACCATATTCTTCCCCATCCAACAATGGAGAATCAGTGTTCTTTTCCATTGGCAAACCAGATGCTTATTCTGTAAGGTCCAATGTCGTTCCTCCACGCTTGCTCTCAGCCCCGGCGACGTCTCAATTCAGGCTCTTCTCCTCCGAGAACGATTTGCCGCCAAAGGAAGATTCAGGAAGTGTTTCCGAGGCGAATTTGGTGCCCACTCAGAAGAAAGAGATACCTTTGGACGTCCAAGATGTGAGCAATAAAGAATTGAAAATGCGGATAGATAAGTACTTCAAAGGTGACGAGGAGGCACTTCCATCAATTCTTGAAGCTATTCTTCAGAGGAAACTGGTTGGAAAGCATGAAGATACGGATGATGAACTTGTTGAAGAACTACAAATGCAGCCATTGGATGACGTCAAGGACAAAGAGTTTGAATCTGATTTTGAAGAATTGTATGAGACAGATGAAGAGATTGACAATCTTTATAATGCTAGGGATATAGTTATGAAAAAAATGGTAAAGAACGAATACTTCAACATGGATGACAAAAAATGGGATGAGCTTGTTGAGGATGGCATTAAGCATGGATTTCTGAAGGACACCAAGGAGTGTGAAGAGATTTTGGAGGATATGCTTAGTTGGGACAAGCTCCTTCCAGGGGAGCTTGAACCTGAAGAAGCTTACAATCTGTTTAAAGAATTTGAAGATCAGATGGTGATGGAATATGGAAAGATGATGGAGGCAGAAGGGCCCCCAAAGTTCGATGAAACCGATGTGCCAGATAATAAAAAGGACTTGGATGACCCGCCAGGTGAAGGCCCAATTCTTAGGTGGCAAACAAGGGTTGTGTTTGCACCAGGTGGGGATGCATGGCACCCCAAAAACCGAAAAGTGAAATTATCTGTTACTGTGAAGGAGCTTGGCTTATCAAAGTACCAATTCCGTCGACTGAGGGAGTTGGTTGGCAAGCGCTATCATCCTGGGAAAAATGAGCTTACCATTACCAGTGAGAGGTTTGAACACAGGGAGGAAAACAGAAAGGATTGCCTCAGGACTCTTTTTTCTCTAATTGAGGAAGCTGGAAAAGCCAACAAGCTTGTAGAGGATGCTCGAACTTCATATGTGAAGGAGAGGCTGCGGGCGAACCCCCAGTTTATGGAGAGGCTGCGTGCCAAGAAAATGGGTTCGCAAGTATCAAGCAGCCCTTTACCTGCTTGA 2349 44.19 MLGTALQFGGIKGEDRFYIPVRARKIYNQQKPSRRPTKTDETETPSSKVVASTTTPSKPLTPQSKSNLERFLDATKPSVPAQYFSKTTMRGWRTCDIEFQPYFVLNDLWESFKEWSAYGAGVPLVLNGGDSVVQYYVPYLSGIQIYGESAALRSDSKSRLANEDSDLDSSRDTSSEGSIDYEFGKSCNLSREQWVHHHLACDSALTIRKTSLRDEHSTRQEGFSSDDGDAEYPRSGLLFQFLEQDLPYQRVPLADKIFDLAYQFPGLKTLRSCDILPASWISVAWYPIYRIPTGPTLKDLDACFLTYHSLSTPIRGNGHGQAPAMIYPNDNDGIPKVSLPVFGLASYKLKGSIWAQNCVKENQMENSLMQAAEKWLRRLQEPYSSPSNNGESVFFSIGKPDAYSVRSNVVPPRLLSAPATSQFRLFSSENDLPPKEDSGSVSEANLVPTQKKEIPLDVQDVSNKELKMRIDKYFKGDEEALPSILEAILQRKLVGKHEDTDDELVEELQMQPLDDVKDKEFESDFEELYETDEEIDNLYNARDIVMKKMVKNEYFNMDDKKWDELVEDGIKHGFLKDTKECEEILEDMLSWDKLLPGELEPEEAYNLFKEFEDQMVMEYGKMMEAEGPPKFDETDVPDNKKDLDDPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPGKNELTITSERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRANPQFMERLRAKKMGSQVSSSPLPA 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1399203 1406830 + CmaCh10G003090.1 Cma10g00309 301625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00309 782 Gene3D - 653 778 - -
Cma10g00309 782 PANTHER DUF789 FAMILY PROTEIN 1 380 - -
Cma10g00309 782 MobiDBLite consensus disorder prediction 626 649 - -
Cma10g00309 782 PANTHER T15D22.8 1 380 - -
Cma10g00309 782 MobiDBLite consensus disorder prediction 43 64 - -
Cma10g00309 782 Pfam Mitochondrial ribosomal subunit protein 669 746 IPR019349 -
Cma10g00309 782 Pfam Protein of unknown function (DUF789) 66 380 IPR008507 -
Cma10g00309 782 MobiDBLite consensus disorder prediction 626 648 - -
Cma10g00309 782 MobiDBLite consensus disorder prediction 28 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00309 K17413 MRPS35; small subunit ribosomal protein S35 - csv:101215266 637.106
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00309 Cma11g00290 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02077 Cma-Chr4:14137841 Cma10g00309 Cma-Chr10:1399203 1.95E-140 dispersed
Cma10g00309 Cma-Chr10:1399203 Cma15g00927 Cma-Chr15:4880285 1.87E-130 dispersed
Cma11g00290 Cma-Chr11:1438460 Cma10g00309 Cma-Chr10:1399203 9.33E-32 dispersed
Cma11g00291 Cma-Chr11:1439231 Cma10g00309 Cma-Chr10:1399203 1.75E-142 transposed
Cma10g00309 Cma-Chr10:1399203 Cma11g00287 Cma-Chr11:1429877 0 wgd
Cma10g00309 Cma-Chr10:1399203 Cma13g01008 Cma-Chr13:7773625 4.76E-20 wgd
Cma10g00309 Cma-Chr10:1399203 Cma18g01000 Cma-Chr18:8409298 4.98E-112 wgd
Cma10g00309 Cma-Chr10:1399203 Cma04g01493 Cma-Chr4:7588079 4.78E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g282 . . . Bda15g00498 Bpe12g00708 . . . . . Cma10g00309 Cma11g00290 Car10g00294 Car11g00265 . . Cpe04g01390 . . . . . . . Cla06g01448 Cam06g1601 Cec06g1663 Cco06g1657 Clacu06g1566 Cmu06g1519 Cre06g2330 Cone2ag0741 . Cone13ag0313 . . . . . Blo13g00185 . . . . . . Bma08g00003 . Cmo10g00332 Cmo11g00295 . . . . . . . . . . . . . . . . . . . . Lsi06g01314 Csa01g00402 Chy02g02347 Cme02g01724
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006242 1 0 2 2 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00309 Cma_Chr10 FPKM 13.172664 14.228948 16.380064 16.441759 14.211143 15.247844 16.424894 17.003119 17.932621 16.982779