Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00315 ATGCCTTACTCAACCTTCTTCAACGCCTATATCAGGACCTCCATGTCCCTCTCCCTCAGAACCACTTCATCGGCTCCGTTCTGCACAGCTTCGACGCGCTTCAGGCCTTGGTTTCCTCACCTTTTCACCCGGAACCTGTCCATGGGGTTTGTCAACTTGCAGTGCCGTCCAGGTTCCGTCACTGGCATTCGTTGTACGAGCCAATCCAAGTGGATTGAAGTTGCGTTGAGGGAGAAACAGCAGGAGCATGTGAGGGGTTTTAAGCAGAGGAATCTTGCGTTTCCGTTTTTGCAGCATCAGTCCTGCTCCAATTATGGTCGGTTTGCGTATGATGATGTGTCTAGTGATGATTCTGATGTCGAATTTGGGTCTCCGCATGGGCAAATGCATTCATCAACCCTTGATAACGTAGATGAGTGGAAATGGAAGTTAACTATGCTTCTACGGAACAATGACGAACTAGAAGTAGTGTCAAGGGAGAAAAAGGATAGACGTGATTTTGATCAACTTTCAGCATTGGCAACCAGAATGGGTTTGCATAGCCGTCAATATGCAAAAGTTGTTGTATTTAGTAAATACCCTCTGCCGAATTACAGGCCAGACCTGGATGATAAGCGACCACAGAGGGAGGTGGTCTTACCTTTTGGGGTCCAAACGGAAGTTGAAGGCCATCTAAGATTGTATCAATCTTCTCACCATTCTGTGACAAGAGGACGTTTCTCAAATAGTTACTTGCCAAAATCTGGCATTGCTGAAAATTGTGCTAACAACTATGGAGTGTTTGAGCACCAGGAACCTTCAACAACACAAAGTCTTGTCATGGAGAAAATTCTTCGCCGCAAAAGTTTGCAAATGAGGAATCAACAGCAAGATTGGCAGGAATCTCTTGAGGGCCAAAAAATGATGGAATTTCGCAAAAGTCTCCCAGCATTTAAAGCGAGGGAAACATTGTTAAAGGCCATTTCAGAGAATCAGGTAGTTGTTGTCTCTGGTGAAACTGGTTGTGGGAAAACCACGCAGCTTCCTCAGTATATATTAGAATCTGAGATTGAAGCTGCTCGTGGAGCTTCTTGTAGTATTATCTGTACTCAGCCTAGACGTATTTCTGCCATGTCTGTTTCTGAAAGAGTTGCTGCAGAACGTGGAGAGAAACTGGGAGAGTCTGTTGGTTATAAAGTTCGTCTGGAGGGTGTAAAAGGAAGGGACACTCGTCTTCTCTTTTGCACCACTGGTGTACTATTGAGAAGATTGCTTGTTGACAGAAATTTGAAAGGTGTAACTCATGTTATTGTTGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTTGTGATTGTCCTGAAAGATCTTCTTCCTCGACGGCCAGATTTGAGGTTGATCTTAATGAGTGCAACTCTAAATGCAGAACTTTTTTGTTCTTATTTTGGGGGTGCTCCAACAATGCATATTCCTGGTTTTACATACCCAGTTCGTGCACACTTTTTGGAGAATATTCTAGAGATGACTGGCTATCGATTGACTCCATATAATCAAATTGATGATTATGGTCAAGAAAAGGCATGGAAAATGCAAAAACAAGCTCAAGCTCTAAAGAAAAGGAAGACTCAGATTGCTTCATCTGTTGAGGATGCATTTGAGGCGTCTAACTTTTTAGCATACAGTCCTCGAACTCAGGAGTCCCTATCCTGTTGGAATCCTGACTCAATTGGTTTCAACCTCATTGAGCATGTCCTTTCTTACATTGTCAAGGGGGAGAGGGCAGGTGCTATACTAGTTTTTATGACCGGATGGGATGATATAAACTCTTTAAAAGACCAGCTCCAGTCACATCCTTTATTAGGGGATCCTAGCAGAGTTTTGATCCTTGCATGTCATGGTTCGATGACCAGCTCTGAGCAGAAATTGATATTTGATAAACCTGAAGATGGAGTTAGGAAAATAGTCCTAGCTACGAACATGGCAGAGACTAGTATCACCATCAATGACGTGGTTTTTGTTGTTGACTGTGGAAAAGCAAAGGAGACATCCTATGATGCTTTAAATAACACTCCTTGTTTGCTTCCATCCTGGATCTCCAAGGCTGCTGCTCGACAAAGAAGAGGTAGGGCTGGTCGTGTTCAACCTGGTGAATGTTACCATCTCTATCCCAGATGCGTGTATGATGCTTTTGCTGATTATCAACTGCCAGAACTTTTAAGGACCCCGTTACAGTCTTTGTGTTTGCAAATCAAGAGTCTGCAACTTGGAAGTATATCAGAGTTCCTATCAAATGCATTGCAGCCGCCAGAGCCTTTATCAGTTCAAAATGCCATAGACTATTTGAAGACAATTGGAGCTCTAGATGAGAAAGAAAATCTGACAGTTCTTGGGCAACACTTATCAGTTCTTCCAGTTGAGCCTAAACTGGGAAAAATGCTTATATTAGGAGCTATTTTCAACTGTCTTGATCCCATTATGACTATTGTTGCTGGTCTTAGTGTTAGAGATCCTTTCCTTATGCCATACGATAAAAAGGATTTAGCCGAGTCAGCAAAAGCACAGTTTGCTGCACGTGATTGCAGTGATCATCTTGCCTTAGTTCGAGCTTATGAGGGTTGGAGAGATGCCGAAAGACAGCAATCTGGTTATGAGTACTGTTGGAGAAACTTTCTCTCCATGCAAACTCTCAGAGCCATCGACTCTCTGAGGAAGCAGTTCTTCTTTTTGCTGAAGGACGCTGGTCTAGTTGATTTTGATGCAGAAAAATGCAACAACTTGAAGCCCGATGGGCACTTAATCCGTGCAGTCATCTGTGCTGGTTTGTTTCCTGGAATTTGCTCTGTTGTGAACAAAGAGAAATCAGTAGCTTTGAAGACAATGGAAGATGGTCAGGTTATGCTATACTTGAACTCGGTTAATGCTGGCTATTCAAAAATCCCCTACCCATGGCTGGTGTTTAATGAAAAGGTGAAAGTCAACTCAGTCTTTCTTCGGGATTCTACCGGGGTTTCTGACTCTATCCTTCTTTTATTTGGAGGACATGTTTCGAGAGGAGGACTTGATGGTCACCTCAAAATGCTGGATGGTTATTTGGAGTTTTTCATGAAACCTGCATTGGCCGAGACTTATTTGAGTCTTAAAACGGAGCTTGATGAGCTTGTTCATCAAAAGCTTTTGAATCCAAAGTTAGATATGCAGCCACACAATGAACTACTATCAGCAATAAGGTTGTTGGTATCGGAGGATCGCTGTGAGGGTAGGTTTGTCTTTGGTCGTCACGTGCCTGTACCATCAAAAAAAGCGATGAACGACGGTTCACCTCGACAGAAAAATGGCGATGGAGCTGGGGGCGATAATTCCAAGAGTCAGCTTCAGACCGTACTCCTGAGAGCTGGACATGATGCACCAACTTACAAAACCAAGCAACTAAAAAACAACCAATTCCGATCCACTGTTATCTTCAACGGATTGAACTTCGTTGGCCAACCATGTGGCAGCAAGAAACTTGCAGAAAAAGATGCAGCTGCTGAGGCTCTACTATGGCTACAAGGCGAGACACAGTCGTCTTCCCAAGCTATCGATCATGCTTCCTTACTTCTTAAAAGGAGCAAAAGGAAAAACGATAGAACATCTCGTAGTGCCAAATGGAGTTAA 3636 43.18 MPYSTFFNAYIRTSMSLSLRTTSSAPFCTASTRFRPWFPHLFTRNLSMGFVNLQCRPGSVTGIRCTSQSKWIEVALREKQQEHVRGFKQRNLAFPFLQHQSCSNYGRFAYDDVSSDDSDVEFGSPHGQMHSSTLDNVDEWKWKLTMLLRNNDELEVVSREKKDRRDFDQLSALATRMGLHSRQYAKVVVFSKYPLPNYRPDLDDKRPQREVVLPFGVQTEVEGHLRLYQSSHHSVTRGRFSNSYLPKSGIAENCANNYGVFEHQEPSTTQSLVMEKILRRKSLQMRNQQQDWQESLEGQKMMEFRKSLPAFKARETLLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGVKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFCSYFGGAPTMHIPGFTYPVRAHFLENILEMTGYRLTPYNQIDDYGQEKAWKMQKQAQALKKRKTQIASSVEDAFEASNFLAYSPRTQESLSCWNPDSIGFNLIEHVLSYIVKGERAGAILVFMTGWDDINSLKDQLQSHPLLGDPSRVLILACHGSMTSSEQKLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSNALQPPEPLSVQNAIDYLKTIGALDEKENLTVLGQHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPYDKKDLAESAKAQFAARDCSDHLALVRAYEGWRDAERQQSGYEYCWRNFLSMQTLRAIDSLRKQFFFLLKDAGLVDFDAEKCNNLKPDGHLIRAVICAGLFPGICSVVNKEKSVALKTMEDGQVMLYLNSVNAGYSKIPYPWLVFNEKVKVNSVFLRDSTGVSDSILLLFGGHVSRGGLDGHLKMLDGYLEFFMKPALAETYLSLKTELDELVHQKLLNPKLDMQPHNELLSAIRLLVSEDRCEGRFVFGRHVPVPSKKAMNDGSPRQKNGDGAGGDNSKSQLQTVLLRAGHDAPTYKTKQLKNNQFRSTVIFNGLNFVGQPCGSKKLAEKDAAAEALLWLQGETQSSSQAIDHASLLLKRSKRKNDRTSRSAKWS 1211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1428868 1436832 + CmaCh10G003150.1 Cma10g00315 301631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00315 1211 Gene3D - 750 855 - -
Cma10g00315 1211 Pfam Double-stranded RNA binding motif 1114 1176 IPR014720 -
Cma10g00315 1211 SMART DRBM_3 1114 1177 IPR014720 -
Cma10g00315 1211 SMART ha2_5 770 861 IPR007502 GO:0004386
Cma10g00315 1211 MobiDBLite consensus disorder prediction 1092 1115 - -
Cma10g00315 1211 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 927 1009 IPR011709 -
Cma10g00315 1211 Gene3D - 565 726 IPR027417 -
Cma10g00315 1211 Pfam Helicase conserved C-terminal domain 575 707 IPR001650 -
Cma10g00315 1211 SUPERFAMILY dsRNA-binding domain-like 1108 1178 - -
Cma10g00315 1211 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 95 1123 - -
Cma10g00315 1211 Pfam Helicase associated domain (HA2) 771 849 IPR007502 GO:0004386
Cma10g00315 1211 SMART ultradead3 306 499 IPR014001 -
Cma10g00315 1211 SMART helicmild6 602 708 IPR001650 -
Cma10g00315 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 884 IPR027417 -
Cma10g00315 1211 Gene3D - 258 486 IPR027417 -
Cma10g00315 1211 MobiDBLite consensus disorder prediction 1180 1211 - -
Cma10g00315 1211 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 574 748 IPR001650 -
Cma10g00315 1211 PANTHER ATP-DEPENDENT RNA HELICASE 95 1123 - -
Cma10g00315 1211 MobiDBLite consensus disorder prediction 1192 1211 - -
Cma10g00315 1211 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 318 485 IPR014001 -
Cma10g00315 1211 CDD SF2_C_RHA 554 716 - -
Cma10g00315 1211 Pfam DEAD/DEAH box helicase 316 468 IPR011545 GO:0003676|GO:0005524
Cma10g00315 1211 Gene3D - 1101 1182 - -
Cma10g00315 1211 CDD DEXHc_RHA-like 324 484 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00315 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101211075 2108.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00315 Cma-Chr10:1428868 Cma16g00392 Cma-Chr16:1923627 2.56E-166 dispersed
Cma04g01461 Cma-Chr4:7429473 Cma10g00315 Cma-Chr10:1428868 0 transposed
Cma14g00364 Cma-Chr14:1599598 Cma10g00315 Cma-Chr10:1428868 0 transposed
Cma10g00315 Cma-Chr10:1428868 Cma18g00989 Cma-Chr18:8336165 3.04E-97 wgd
Cma10g00315 Cma-Chr10:1428868 Cma04g01482 Cma-Chr4:7533692 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00315 Cma_Chr10 FPKM 4.873099 4.200579 7.187081 7.923072 9.241179 9.200413 8.942752 10.266221 8.992306 8.753142