Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00316 ATGAGCAGAAGCCAATTCTTCAGTTTCTACACAGGCCAAGGTGATTGCCAACGCCCTCAAAAGCTGCGGCAGCCTTCAAGACCTCCTCCTCTGTTTGTGGGAGCGATGGCGAAAGATTCGAGCTCGTCCTTGAACTCGCCTCTTCTTCACATTTCTGAAGATGGGTTGAATTCAAATGATAAGAACAATAGAAGGAAACAACAAGTAGCTGAGGAAGTAAAGAAGCAGCTATGGCTAGCAGGGCCTTTGATATTGGTCAGTCTTTTACAATATTGTTTGCAGATGATTTCCGTCATGTTTGTGGGTCATCTTGGCGAGTTGCCTCTCTCTGGTGCTTCCATGGCGACCTCTTTTGCAACAGTGACTGGTTTCAGCTTATTGATGGGGATGGCAAGTGCTTTAGATACATTTTGTGGCCAATCTAATGGAGCTAAGCAATATCATATGCTGGGTATTCATATGCAGCGAGCAATGTTTGTTCTTTTGATTGTGAGTATACCTCTTGCTATTGTTTGGGCTAACACAGGAGAGATTTTGAAAGCACTTGGCCAAGATGCTGAGATTTCAAGAGAAGCTGGGAAATATGCTATTTCCATGATTCCAAGCCTTTTTGCATATGGTTTACTTCAATGTTTGAACAGATTCTTACAGACCCAGAACGTTGTTTTTCCTATGGTGATGTGTTCTGGAATAGCAGCTTTGCTTCACATACCCATTTGTTGGATCTTGATATTCAAAGTTGGGCTTGAAATTCGAGGAGCTGCTATTGCTAACTCCATCTCTTATTGGCTTAATGTGTTGATGTTGATACTTTATGTTAAGTTTTCTTCTTCATGTTCGAAGTCTTGGACTGGGTTTTCAGTGCAGGCTTTTCAGAACATCCCTTATTTCCTTAAGCTTGCAATTCCTTCAGCTTGCATGGTTTGCACGCGAGTCTCAAATGAACTAGGAGCTGGCCATGCGGGAGCAGCCAAGCTAGCTGGATGTGTAGTAGTGACAATGGCCACCATTGAGGGGCTACTGCTTGGAACTACCTTGATTCTTATACGTAATGTTTGGGGGTATGCTTATAGCAACGAACCAGAAGTGATTGAATACGTAGCCAGCATGCTTCCTATAGTTGCAGTTTCCAGTTTCCTCGATGGACTTCAATGCGTGCTTTCAGGCATTGCTAGAGGTTGTGGTTGGCAGAAGATTGGTGCCTTTGTCAATCTTGGATCATATTATATTGTGGGAATTCCATCTGCAGTTTTGCTTGCTTTTCTTTTGCACATTGGTGGACGGGTAAACAGCGTTGTTAATTCCGAGCTAAATTATACGAACCAAATACCTTTATTAGTTCAAAAGTTTCTTGGCCTTTTATAA 1365 42.56 MSRSQFFSFYTGQGDCQRPQKLRQPSRPPPLFVGAMAKDSSSSLNSPLLHISEDGLNSNDKNNRRKQQVAEEVKKQLWLAGPLILVSLLQYCLQMISVMFVGHLGELPLSGASMATSFATVTGFSLLMGMASALDTFCGQSNGAKQYHMLGIHMQRAMFVLLIVSIPLAIVWANTGEILKALGQDAEISREAGKYAISMIPSLFAYGLLQCLNRFLQTQNVVFPMVMCSGIAALLHIPICWILIFKVGLEIRGAAIANSISYWLNVLMLILYVKFSSSCSKSWTGFSVQAFQNIPYFLKLAIPSACMVCTRVSNELGAGHAGAAKLAGCVVVTMATIEGLLLGTTLILIRNVWGYAYSNEPEVIEYVASMLPIVAVSSFLDGLQCVLSGIARGCGWQKIGAFVNLGSYYIVGIPSAVLLAFLLHIGGRVNSVVNSELNYTNQIPLLVQKFLGLL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1436992 1440984 + CmaCh10G003160.1 Cma10g00316 301632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00316 454 MobiDBLite consensus disorder prediction 1 20 - -
Cma10g00316 454 MobiDBLite consensus disorder prediction 1 31 - -
Cma10g00316 454 PANTHER PROTEIN DETOXIFICATION 308 432 - -
Cma10g00316 454 PANTHER PROTEIN DETOXIFICATION 58 309 - -
Cma10g00316 454 Pfam MatE 82 242 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma10g00316 454 Pfam MatE 308 417 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma10g00316 454 TIGRFAM matE: MATE efflux family protein 82 310 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma10g00316 454 PANTHER MULTIDRUG RESISTANCE PROTEIN 308 432 - -
Cma10g00316 454 CDD MATE_eukaryotic 72 428 IPR045069 GO:0042910|GO:1990961
Cma10g00316 454 PANTHER MULTIDRUG RESISTANCE PROTEIN 58 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00316 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101205241 650.203
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00316 Cma11g00297 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00316 Cma-Chr10:1436992 Cma11g00297 Cma-Chr11:1473820 0 dispersed
Cma10g00316 Cma-Chr10:1436992 Cma10g00318 Cma-Chr10:1445748 4.03E-38 proximal
Cma10g00316 Cma-Chr10:1436992 Cma10g00317 Cma-Chr10:1445211 3.29E-29 tandem
Cma11g00068 Cma-Chr11:338172 Cma10g00316 Cma-Chr10:1436992 1.44E-32 transposed
Cma10g00316 Cma-Chr10:1436992 Cma11g00296 Cma-Chr11:1469380 0 wgd
Cma10g00316 Cma-Chr10:1436992 Cma18g00986 Cma-Chr18:8314258 1.64E-114 wgd
Cma10g00316 Cma-Chr10:1436992 Cma04g01475 Cma-Chr4:7510568 4.00E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g255 . . . . . . . . . . Cma10g00316 Cma11g00297 . . . . . Bhi02g00115 . . . Hepe09g0239 . . Cla06g01437 Cam06g1592 Cec06g1652 Cco06g1644 Clacu06g1553 Cmu06g1508 Cre06g2318 . . . . . . . . . . . . Bpe07g01043 . . . . Cmo10g00340 Cmo11g00302 . . . . . . . . . . . . . . . . . . . . . Csa01g00419 Chy02g02327 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00316 Cma_Chr10 FPKM 3.572161 4.235343 43.120415 40.413731 12.005808 12.170364 11.536257 29.161856 29.163794 33.657715