Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00319 ATGAAGGCAAAAAGAAGAGAAGTGTACGAAGAGCAAATCCAAAGGTCGAAGTTTAAGAGGGATTTCTGGAAAAGGTATAAGAGGAAGATTTTAATTACAGCTGGAGTTTTAGGAAGCGGGTATTTTCTGTACCGACAATATGATTATTACAGTCGAAGGCTTCATGATATTCAGAAAGAGTTGGATAATGAACGTGAAGCAGATGAGCTCATTAAAGCTCAAATACAAGCTCATTTTGAGAACATTCAAAGAATAGCTGATACAACGACGTTGCCTCATGCTTTACAACATTTACATAATCGGATAGAGGAAGATTTGGATCTTTCACACCTGACAGAGAGATTAATGATGGGGAAGGGCGAGCCAAACACTTTGACATTAGCTGAGAAACTTGATTTATGGGAAAGCCTCAAAATACTAAGCTTCACAAAGATGGTGATATCACTCTGGGCAATAACTTTGTTAAGTTTGTACATTAGAGTTCAAGTCAACATCTTAGGAAGACATATGTACATCGATACTGCCCGTGGTCTTGGTAGCTCCCAGTTGCTTGAGGAGGCTGATCTCATCAATAGAGAAGACCAACAGAAATTTCTGGCCATCTCTGATTTTCTCTGTAATTATGGTCTGAATGCCTTGATTCCTAAACTGCAGGTCGCAGCCGGAGAAGTTCTCAAGAGAAAACAGTTGCGAGATGTCTTTAATACAACCGTACTTCGTGACACTACTACACAAATAATTAAAATTTTCATGAGCACAGGAAGTCCCCATCATTGGTTGGACTACTTGATGCCTGGGGACAATCAATCTAATATTACAGACACGGTCTCCACTGACGACGATGCAGCTGCCCGAAATTTCAACAAGTTTGATCAGCTCATGATGGAGACTAGAGCAGTACTGCTAAGTGCCGAGTTCGGGAATGTCGTCGAGACATCGTTAGAAGTGGGAGTCGATGGATTGATGGATGAAATGGAGGCTTCAGTTGCTGGAGGCAGCAGCAGAACATCAGGAATACCCCTGGCTAGGCTTGTGCCAAGAGTGGCCCAGATGGGGCTATTGCTCCTTGAAGATCCAATAAAAAGTAGATTCATCAAAACGATAAGAGCAATGGCTGAGCTCGATCCATCAAAGAAAGTGGCCGATAGATATTTAAAGCGTGAGGTTCTCGGGGAGGGTACCTATGGTGTTGTATATAAGGCTATTGATACTCAGGTAGATTGCTATGGCAGCCATGGCGGCTGCTTCTTGGGCTATTTGGAGTATTTCTTCGAGTTTTATCACATTGGCTATGTTTCAATGCGGTGGAGTACCTGGTGCTTTTGCCCTAAGAATCAAATTTGTTTTCCTGAATTGTATCTCATGACAGGCCAGACGGTTGCAATCAAGAAAATTCGGCTTGGGAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTCAAAGATCCAAATATAATTGAGTTAATTGATGCATTCCCTCACAAAGGAAATTTGCATCTCGTATTTGAGTTTATGGAGACAGACCTTGAAGCTGTTATACGTGATCGAAACATATTTCTTTCCCCAGCTGACATAAAATCATTCCTTCAGATGACGTTGAAAGGACTTGCTTATTGCCACAAGAAATGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCAAATGGTCAACTGAAACTTGCAGATTTTGGTTTGGCTCGAATATTTGGGAGTCCGGATCGTAGATTTACTCACCAGGTATACTTCTTCTCCCTCTTTTGCATTATTGATAAACGCTGGTGTTTGCCCGATGGTACAGAGCGCCTGAGCTATTGTTTGGCACTAAGCAATATGGCTCTGCAGTTGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTTTTACTTCGTCGACCTTTTCTTCAGGCAAGGTTCAAGTGACATTGACCAATTGGGGAAGATCTTTGCAGCTTTTGGAACACCAACGCCTTCTCAATGGCCTGATATATTATACCTACCTGATTACGTGGAGTTCCAATATGTTCCTGCACCTCCCCTACGATCATTTTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCATATGATCCAACATCTAGAATTACCATTCAACAAGCATTGGAGCATAGATACTTCTCATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAGGCAAGAACCTACGAACTCTCGAGGTTTGGACTTAAATTCAAATGAGGTTCCTACTGTCCCTTCTCCAAGAAAGTCGAGAAGAGTAATGCCAGATCGTGAGGCTTTTGAAGGAAATGCATATAAAGCTGATAGGCTTGATGACCATGGAAAATTGTGGAGTTACTTCCCAAGTGATGACTGCCGGATGGGTTCATCTTTTACCCTCTTATCCCCTCATGCGACTGCTAAATTATACGGGTGTTCCATTATGTAA 2493 41.96 MKAKRREVYEEQIQRSKFKRDFWKRYKRKILITAGVLGSGYFLYRQYDYYSRRLHDIQKELDNEREADELIKAQIQAHFENIQRIADTTTLPHALQHLHNRIEEDLDLSHLTERLMMGKGEPNTLTLAEKLDLWESLKILSFTKMVISLWAITLLSLYIRVQVNILGRHMYIDTARGLGSSQLLEEADLINREDQQKFLAISDFLCNYGLNALIPKLQVAAGEVLKRKQLRDVFNTTVLRDTTTQIIKIFMSTGSPHHWLDYLMPGDNQSNITDTVSTDDDAAARNFNKFDQLMMETRAVLLSAEFGNVVETSLEVGVDGLMDEMEASVAGGSSRTSGIPLARLVPRVAQMGLLLLEDPIKSRFIKTIRAMAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQVDCYGSHGGCFLGYLEYFFEFYHIGYVSMRWSTWCFCPKNQICFPELYLMTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSFLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVYFFSLFCIIDKRWCLPDGTERLSYCLALSNMALQLMFGQQLVFLLNFYFVDLFFRQGSSDIDQLGKIFAAFGTPTPSQWPDILYLPDYVEFQYVPAPPLRSFFPMASDDTLDLLSKMFAYDPTSRITIQQALEHRYFSSAPLPTDPSKLPRPTSRQEPTNSRGLDLNSNEVPTVPSPRKSRRVMPDREAFEGNAYKADRLDDHGKLWSYFPSDDCRMGSSFTLLSPHATAKLYGCSIM 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1447108 1456805 - CmaCh10G003190.1 Cma10g00319 301635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00319 830 MobiDBLite consensus disorder prediction 732 780 - -
Cma10g00319 830 PANTHER CYCLIN-DEPENDENT KINASE D-2 455 593 - -
Cma10g00319 830 PANTHER CYCLIN-DEPENDENT KINASE D-2 379 405 - -
Cma10g00319 830 PANTHER CYCLIN-DEPENDENT KINASE D-2 646 794 - -
Cma10g00319 830 ProSiteProfiles Protein kinase domain profile. 384 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00319 830 MobiDBLite consensus disorder prediction 741 767 - -
Cma10g00319 830 Gene3D Phosphorylase Kinase; domain 1 366 408 - -
Cma10g00319 830 PANTHER CELL DIVISION PROTEIN KINASE 455 593 - -
Cma10g00319 830 Pfam Protein kinase domain 456 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00319 830 SMART serkin_6 384 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00319 830 SUPERFAMILY Protein kinase-like (PK-like) 375 749 IPR011009 -
Cma10g00319 830 Pfam Peroxin-3 22 118 IPR006966 GO:0005779|GO:0007031
Cma10g00319 830 Pfam Peroxin-3 126 335 IPR006966 GO:0005779|GO:0007031
Cma10g00319 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
Cma10g00319 830 Gene3D Transferase(Phosphotransferase) domain 1 515 745 - -
Cma10g00319 830 Gene3D Phosphorylase Kinase; domain 1 453 514 - -
Cma10g00319 830 PANTHER CELL DIVISION PROTEIN KINASE 379 405 - -
Cma10g00319 830 PANTHER CELL DIVISION PROTEIN KINASE 646 794 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00319 Cma11g00298 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00319 Cma-Chr10:1447108 Cma18g00715 Cma-Chr18:6477536 3.44E-44 dispersed
Cma11g00301 Cma-Chr11:1487830 Cma10g00319 Cma-Chr10:1447108 0 transposed
Cma10g00319 Cma-Chr10:1447108 Cma11g00298 Cma-Chr11:1477703 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68828 PF00069 Pkinase 1.30E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00319 K02202 K13336 csv:101216945 645.195