Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00321 ATGTCTCGCCGCAGCCATGTCGACGGCGGTGACAAGGAGCTTCCCGCCAGCGAGGAAGACGATGAAGATGATCTGGTTGATGATGACATGGAAACCCTCCGAAGAGCGTGCAGGCTTGCTGGAGTTAATCATGAGGATTATGTCAATCCCCAGCTTTCGTTGCCTGCCGCCGGAGATGCTAATCTAGGTTCTGATTCTGATGATGTTGATGATCTCGAACTTCTTCGAAATATTCAGAACCGGTTCTCGATTGCGGCCGATGAGCAGCCGCTGAGTATTCTCCCACCGGTGACCGCGGACGAGGAGGAAGATGATTTCGAGACGCTACGTTCGATTCAGCGGCGCTTTGCGGCGTATGAAAGTGATATTTTGAGCAATAAACCTGATCAATCTTGTGACTTGGATGGGCCTCTAAAGATGGATTCTGACAACACAAATGTTGAAAGATTGACATCCTCAGAAAGGTCATCCATGGTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCTTTGGCATTTATTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTCTTCGTAGTAAGATGATTCACCTTGAGGCTAGAATTGAGGAGAACAAAAAACTCAGAAAACGTTTCAAAGTTCTCAAAGGTTTCCAGGGTTCATGTAGACGAAAAACAACTTGTGCCCTGTCTCAGATGGTAGATCCTCGAGTCCAGTTAATATCAGCTGGAAAACCACAACAGGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGTGTTATGGCCCAGCTGAGAATTCTCATGTTGCTTGCTACAGAATAGCATTGACAAAGTTTCATCCTGTAGATCGAAAAAGATGGTCCAATTTTGAAAGGGAGAACCTAGGCAAGGGAATAAGACAGCAATTCCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGAGATACAAGGATTTTCAGCAGAATCAGATGATCTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTCCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGTTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGATCCCCTAATTAACCGGAATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAAGGATTGAATAACTGGATTGACCTGGCAGTTTCGTTGGGAACAAACAGAACTCCTTTTCAGTGGTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGTGAGTGGACTAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGAGGGAGATTGGCAGGCCGTAGCTTCTACTTTGGAAGGGCGAACTGGTCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGATCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGCCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGCGTGCCGTCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATCAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGTTGCTCTTATCAGCAACTTTGTTGATAGGGAATCAGAGCGGCCTGCTCTTGGTCCTACTGACTTTCGACCTGTACCAAATTCACATTTATTATGTAATACTGATGATCCAGAAACTGCCCCAAAAAGAAATGTGAGGACGAGAAGGATGCCAGTGTCAAGGAATGAAAAGAGTGCTAATGGTGATGCTCCAAAGAAGAGGAAATCAAATAACCAGAGGAATCGAGTTGATGAAACGGCTCAGGTGGATTTTGCAAGTAATACATCTTCTGTCCCAGAGGTTAAATCTACAAAACCTCAAAGAAAACGAACTAGACATGGAGCTTATACCACTAGGAGGAAAGGGGCTCCGAAGATAGGTTGTAATAGTGAGAGATGCGCAGAACAGAATTCGGACACTCGGAACCTTGAGGTGCAGTTAAATTGCAAGGAACCAGCAGAGAGGATCAACAGTGACTGCCCTGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGCTGCAGAGATGCATTCTGAAGGAGTTGTATGCTTTTCAGAACAAGAAGAAAATCAAAACTCTACCGGATCTTCTGGAGTGTCCGTACTGTCAGAAATGACTAATGACATGGACGAATATAACCCTTCTACTCTTCCTGATACAACGTTGCTGGCTAGTATTACTGCGGATGATATTATAGAAACGAAGGGCGTGAACGTTGCAGACAAAGATCTGGATGGCAGTAACAGTTTCTCATTACCACAAAGTTGCTTAGAACTCAGGACAACTGACAGTGAAGGTGTTGACAGCTATTCTGTGGATGAATTCACAGATAAAAGCCATGTGGTTTGCAAGCCCCAAGGCAGAAGGAAGAAAAATAGCAAAAGATCAAATAAGAGCCAGGACTCGTTGGTTTCTTGTCAACAAGCAGAGCTGGAGATGTCTGGGACAAATGAGCTTCATCGTTGTAATCAATTGAAGAAGAGAAAGCATAGCAGTACGAATACGAGTCCATTAGGAACAATGGAAGCCGTTGAAGAGGTTGATGACTGCACTCTCCTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACAACCACACATGGCAAGAAAGTGGATGGCAGTTCAAGCACTTCCCCTGAAGTTGATAATGACGACAATGATCCAACCCTTGCCTTGCTTCTCAAGGAAAAATTGAAGAGAAAAAAGCATTAA 3003 43.42 MSRRSHVDGGDKELPASEEDDEDDLVDDDMETLRRACRLAGVNHEDYVNPQLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEQPLSILPPVTADEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTNVERLTSSERSSMVAFEKGSLPKAALAFIDAIKKNRSQQKFLRSKMIHLEARIEENKKLRKRFKVLKGFQGSCRRKTTCALSQMVDPRVQLISAGKPQQAKDSSKKDKRLSAMCYGPAENSHVACYRIALTKFHPVDRKRWSNFERENLGKGIRQQFQEMVLQISVDQISEIQGFSAESDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRNPWTTSEDKNLLFTIQQKGLNNWIDLAVSLGTNRTPFQWLSRYQRSLNASILKSEWTKDEDDKLRSAVAIFGEGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNQVPLLQEARKIQKVALISNFVDRESERPALGPTDFRPVPNSHLLCNTDDPETAPKRNVRTRRMPVSRNEKSANGDAPKKRKSNNQRNRVDETAQVDFASNTSSVPEVKSTKPQRKRTRHGAYTTRRKGAPKIGCNSERCAEQNSDTRNLEVQLNCKEPAERINSDCPETVDENGMEVFENKAAEMHSEGVVCFSEQEENQNSTGSSGVSVLSEMTNDMDEYNPSTLPDTTLLASITADDIIETKGVNVADKDLDGSNSFSLPQSCLELRTTDSEGVDSYSVDEFTDKSHVVCKPQGRRKKNSKRSNKSQDSLVSCQQAELEMSGTNELHRCNQLKKRKHSSTNTSPLGTMEAVEEVDDCTLLGFLQKRLKRTTTTHGKKVDGSSSTSPEVDNDDNDPTLALLLKEKLKRKKH 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1460648 1471269 - CmaCh10G003210.1 Cma10g00321 301637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00321 1000 SMART sant 540 588 IPR001005 -
Cma10g00321 1000 SMART sant 282 379 IPR001005 -
Cma10g00321 1000 SMART sant 382 432 IPR001005 -
Cma10g00321 1000 SMART sant 435 484 IPR001005 -
Cma10g00321 1000 SMART sant 488 537 IPR001005 -
Cma10g00321 1000 SUPERFAMILY Homeodomain-like 359 426 IPR009057 -
Cma10g00321 1000 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 17 929 - -
Cma10g00321 1000 Pfam Myb-like DNA-binding domain 542 585 IPR001005 -
Cma10g00321 1000 Pfam Myb-like DNA-binding domain 489 535 IPR001005 -
Cma10g00321 1000 Pfam Myb-like DNA-binding domain 436 480 IPR001005 -
Cma10g00321 1000 ProSiteProfiles Myb-like domain profile. 484 535 IPR001005 -
Cma10g00321 1000 SUPERFAMILY Homeodomain-like 415 487 IPR009057 -
Cma10g00321 1000 ProSiteProfiles Myb-like domain profile. 536 586 IPR001005 -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 1 28 - -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 640 675 - -
Cma10g00321 1000 Gene3D - 380 430 - -
Cma10g00321 1000 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 536 590 IPR017930 -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 960 986 - -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 966 981 - -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 614 721 - -
Cma10g00321 1000 CDD SANT 492 533 IPR001005 -
Cma10g00321 1000 Gene3D - 487 540 - -
Cma10g00321 1000 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 488 535 IPR017930 -
Cma10g00321 1000 Gene3D - 543 589 - -
Cma10g00321 1000 ProSiteProfiles Myb-like domain profile. 431 482 IPR001005 -
Cma10g00321 1000 Gene3D - 434 486 - -
Cma10g00321 1000 SUPERFAMILY Homeodomain-like 486 582 IPR009057 -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 676 696 - -
Cma10g00321 1000 ProSiteProfiles Myb-like domain profile. 378 430 IPR001005 -
Cma10g00321 1000 CDD SANT 438 482 IPR001005 -
Cma10g00321 1000 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 431 486 IPR017930 -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 14 28 - -
Cma10g00321 1000 CDD SANT 543 586 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00321 K09422 MYBP; transcription factor MYB, plant - csv:101216287 1470.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00321 Cma11g00302 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00321 Cma-Chr10:1460648 Cma05g00602 Cma-Chr5:3011623 8.11E-12 dispersed
Cma10g00321 Cma-Chr10:1460648 Cma14g00148 Cma-Chr14:613195 2.43E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00972 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.6 0.0e+00 1216.1
Cma10g01018 . 1 853 MYB-Related Transcription Factor Family AT1G09770 76.0 0.0e+00 1199.1
Cma10g00321 CST 165 631 MYB-Related Transcription Factor Family AT3G18100 55.6 8.9e-148 521.5
Cma10g00321 CST 165 631 MYB-Related Transcription Factor Family AT3G18100 55.6 8.9e-148 521.5
Cma11g00972 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.6 0.0e+00 1216.1
Cma10g01018 . 1 853 MYB-Related Transcription Factor Family AT1G09770 76.0 0.0e+00 1199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35709 PF00249 Myb_DNA-binding 9.70E-09 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00321 Cma_Chr10 FPKM 2.942797 3.521 4.337077 5.009915 3.793189 3.374269 3.856975 5.23507 5.144355 5.588844