Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00321 | ATGTCTCGCCGCAGCCATGTCGACGGCGGTGACAAGGAGCTTCCCGCCAGCGAGGAAGACGATGAAGATGATCTGGTTGATGATGACATGGAAACCCTCCGAAGAGCGTGCAGGCTTGCTGGAGTTAATCATGAGGATTATGTCAATCCCCAGCTTTCGTTGCCTGCCGCCGGAGATGCTAATCTAGGTTCTGATTCTGATGATGTTGATGATCTCGAACTTCTTCGAAATATTCAGAACCGGTTCTCGATTGCGGCCGATGAGCAGCCGCTGAGTATTCTCCCACCGGTGACCGCGGACGAGGAGGAAGATGATTTCGAGACGCTACGTTCGATTCAGCGGCGCTTTGCGGCGTATGAAAGTGATATTTTGAGCAATAAACCTGATCAATCTTGTGACTTGGATGGGCCTCTAAAGATGGATTCTGACAACACAAATGTTGAAAGATTGACATCCTCAGAAAGGTCATCCATGGTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCTTTGGCATTTATTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTCTTCGTAGTAAGATGATTCACCTTGAGGCTAGAATTGAGGAGAACAAAAAACTCAGAAAACGTTTCAAAGTTCTCAAAGGTTTCCAGGGTTCATGTAGACGAAAAACAACTTGTGCCCTGTCTCAGATGGTAGATCCTCGAGTCCAGTTAATATCAGCTGGAAAACCACAACAGGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGTGTTATGGCCCAGCTGAGAATTCTCATGTTGCTTGCTACAGAATAGCATTGACAAAGTTTCATCCTGTAGATCGAAAAAGATGGTCCAATTTTGAAAGGGAGAACCTAGGCAAGGGAATAAGACAGCAATTCCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGAGATACAAGGATTTTCAGCAGAATCAGATGATCTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTCCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGTTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGATCCCCTAATTAACCGGAATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAAGGATTGAATAACTGGATTGACCTGGCAGTTTCGTTGGGAACAAACAGAACTCCTTTTCAGTGGTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGTGAGTGGACTAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGAGGGAGATTGGCAGGCCGTAGCTTCTACTTTGGAAGGGCGAACTGGTCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGATCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGCCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGCGTGCCGTCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATCAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGTTGCTCTTATCAGCAACTTTGTTGATAGGGAATCAGAGCGGCCTGCTCTTGGTCCTACTGACTTTCGACCTGTACCAAATTCACATTTATTATGTAATACTGATGATCCAGAAACTGCCCCAAAAAGAAATGTGAGGACGAGAAGGATGCCAGTGTCAAGGAATGAAAAGAGTGCTAATGGTGATGCTCCAAAGAAGAGGAAATCAAATAACCAGAGGAATCGAGTTGATGAAACGGCTCAGGTGGATTTTGCAAGTAATACATCTTCTGTCCCAGAGGTTAAATCTACAAAACCTCAAAGAAAACGAACTAGACATGGAGCTTATACCACTAGGAGGAAAGGGGCTCCGAAGATAGGTTGTAATAGTGAGAGATGCGCAGAACAGAATTCGGACACTCGGAACCTTGAGGTGCAGTTAAATTGCAAGGAACCAGCAGAGAGGATCAACAGTGACTGCCCTGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGCTGCAGAGATGCATTCTGAAGGAGTTGTATGCTTTTCAGAACAAGAAGAAAATCAAAACTCTACCGGATCTTCTGGAGTGTCCGTACTGTCAGAAATGACTAATGACATGGACGAATATAACCCTTCTACTCTTCCTGATACAACGTTGCTGGCTAGTATTACTGCGGATGATATTATAGAAACGAAGGGCGTGAACGTTGCAGACAAAGATCTGGATGGCAGTAACAGTTTCTCATTACCACAAAGTTGCTTAGAACTCAGGACAACTGACAGTGAAGGTGTTGACAGCTATTCTGTGGATGAATTCACAGATAAAAGCCATGTGGTTTGCAAGCCCCAAGGCAGAAGGAAGAAAAATAGCAAAAGATCAAATAAGAGCCAGGACTCGTTGGTTTCTTGTCAACAAGCAGAGCTGGAGATGTCTGGGACAAATGAGCTTCATCGTTGTAATCAATTGAAGAAGAGAAAGCATAGCAGTACGAATACGAGTCCATTAGGAACAATGGAAGCCGTTGAAGAGGTTGATGACTGCACTCTCCTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACAACCACACATGGCAAGAAAGTGGATGGCAGTTCAAGCACTTCCCCTGAAGTTGATAATGACGACAATGATCCAACCCTTGCCTTGCTTCTCAAGGAAAAATTGAAGAGAAAAAAGCATTAA | 3003 | 43.42 | MSRRSHVDGGDKELPASEEDDEDDLVDDDMETLRRACRLAGVNHEDYVNPQLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEQPLSILPPVTADEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTNVERLTSSERSSMVAFEKGSLPKAALAFIDAIKKNRSQQKFLRSKMIHLEARIEENKKLRKRFKVLKGFQGSCRRKTTCALSQMVDPRVQLISAGKPQQAKDSSKKDKRLSAMCYGPAENSHVACYRIALTKFHPVDRKRWSNFERENLGKGIRQQFQEMVLQISVDQISEIQGFSAESDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRNPWTTSEDKNLLFTIQQKGLNNWIDLAVSLGTNRTPFQWLSRYQRSLNASILKSEWTKDEDDKLRSAVAIFGEGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNQVPLLQEARKIQKVALISNFVDRESERPALGPTDFRPVPNSHLLCNTDDPETAPKRNVRTRRMPVSRNEKSANGDAPKKRKSNNQRNRVDETAQVDFASNTSSVPEVKSTKPQRKRTRHGAYTTRRKGAPKIGCNSERCAEQNSDTRNLEVQLNCKEPAERINSDCPETVDENGMEVFENKAAEMHSEGVVCFSEQEENQNSTGSSGVSVLSEMTNDMDEYNPSTLPDTTLLASITADDIIETKGVNVADKDLDGSNSFSLPQSCLELRTTDSEGVDSYSVDEFTDKSHVVCKPQGRRKKNSKRSNKSQDSLVSCQQAELEMSGTNELHRCNQLKKRKHSSTNTSPLGTMEAVEEVDDCTLLGFLQKRLKRTTTTHGKKVDGSSSTSPEVDNDDNDPTLALLLKEKLKRKKH | 1000 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1460648 | 1471269 | - | CmaCh10G003210.1 | Cma10g00321 | 301637 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00321 | 1000 | SMART | sant | 540 | 588 | IPR001005 | - | |
Cma10g00321 | 1000 | SMART | sant | 282 | 379 | IPR001005 | - | |
Cma10g00321 | 1000 | SMART | sant | 382 | 432 | IPR001005 | - | |
Cma10g00321 | 1000 | SMART | sant | 435 | 484 | IPR001005 | - | |
Cma10g00321 | 1000 | SMART | sant | 488 | 537 | IPR001005 | - | |
Cma10g00321 | 1000 | SUPERFAMILY | Homeodomain-like | 359 | 426 | IPR009057 | - | |
Cma10g00321 | 1000 | PANTHER | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 | 17 | 929 | - | - | |
Cma10g00321 | 1000 | Pfam | Myb-like DNA-binding domain | 542 | 585 | IPR001005 | - | |
Cma10g00321 | 1000 | Pfam | Myb-like DNA-binding domain | 489 | 535 | IPR001005 | - | |
Cma10g00321 | 1000 | Pfam | Myb-like DNA-binding domain | 436 | 480 | IPR001005 | - | |
Cma10g00321 | 1000 | ProSiteProfiles | Myb-like domain profile. | 484 | 535 | IPR001005 | - | |
Cma10g00321 | 1000 | SUPERFAMILY | Homeodomain-like | 415 | 487 | IPR009057 | - | |
Cma10g00321 | 1000 | ProSiteProfiles | Myb-like domain profile. | 536 | 586 | IPR001005 | - | |
Cma10g00321 | 1000 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cma10g00321 | 1000 | MobiDBLite | consensus disorder prediction | 640 | 675 | - | - | |
Cma10g00321 | 1000 | Gene3D | - | 380 | 430 | - | - | |
Cma10g00321 | 1000 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 536 | 590 | IPR017930 | - | |
Cma10g00321 | 1000 | MobiDBLite | consensus disorder prediction | 960 | 986 | - | - | |
Cma10g00321 | 1000 | MobiDBLite | consensus disorder prediction | 966 | 981 | - | - | |
Cma10g00321 | 1000 | MobiDBLite | consensus disorder prediction | 614 | 721 | - | - | |
Cma10g00321 | 1000 | CDD | SANT | 492 | 533 | IPR001005 | - | |
Cma10g00321 | 1000 | Gene3D | - | 487 | 540 | - | - | |
Cma10g00321 | 1000 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 488 | 535 | IPR017930 | - | |
Cma10g00321 | 1000 | Gene3D | - | 543 | 589 | - | - | |
Cma10g00321 | 1000 | ProSiteProfiles | Myb-like domain profile. | 431 | 482 | IPR001005 | - | |
Cma10g00321 | 1000 | Gene3D | - | 434 | 486 | - | - | |
Cma10g00321 | 1000 | SUPERFAMILY | Homeodomain-like | 486 | 582 | IPR009057 | - | |
Cma10g00321 | 1000 | MobiDBLite | consensus disorder prediction | 676 | 696 | - | - | |
Cma10g00321 | 1000 | ProSiteProfiles | Myb-like domain profile. | 378 | 430 | IPR001005 | - | |
Cma10g00321 | 1000 | CDD | SANT | 438 | 482 | IPR001005 | - | |
Cma10g00321 | 1000 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 431 | 486 | IPR017930 | - | |
Cma10g00321 | 1000 | MobiDBLite | consensus disorder prediction | 14 | 28 | - | - | |
Cma10g00321 | 1000 | CDD | SANT | 543 | 586 | IPR001005 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00321 | Cma11g00302 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00321 | Cma-Chr10:1460648 | Cma05g00602 | Cma-Chr5:3011623 | 8.11E-12 | dispersed | |
Cma10g00321 | Cma-Chr10:1460648 | Cma14g00148 | Cma-Chr14:613195 | 2.43E-12 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35709 | PF00249 | Myb_DNA-binding | 9.70E-09 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00321 | K09422 | - | csv:101216287 | 1470.68 |