Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00321 ATGTCTCGCCGCAGCCATGTCGACGGCGGTGACAAGGAGCTTCCCGCCAGCGAGGAAGACGATGAAGATGATCTGGTTGATGATGACATGGAAACCCTCCGAAGAGCGTGCAGGCTTGCTGGAGTTAATCATGAGGATTATGTCAATCCCCAGCTTTCGTTGCCTGCCGCCGGAGATGCTAATCTAGGTTCTGATTCTGATGATGTTGATGATCTCGAACTTCTTCGAAATATTCAGAACCGGTTCTCGATTGCGGCCGATGAGCAGCCGCTGAGTATTCTCCCACCGGTGACCGCGGACGAGGAGGAAGATGATTTCGAGACGCTACGTTCGATTCAGCGGCGCTTTGCGGCGTATGAAAGTGATATTTTGAGCAATAAACCTGATCAATCTTGTGACTTGGATGGGCCTCTAAAGATGGATTCTGACAACACAAATGTTGAAAGATTGACATCCTCAGAAAGGTCATCCATGGTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCTTTGGCATTTATTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTCTTCGTAGTAAGATGATTCACCTTGAGGCTAGAATTGAGGAGAACAAAAAACTCAGAAAACGTTTCAAAGTTCTCAAAGGTTTCCAGGGTTCATGTAGACGAAAAACAACTTGTGCCCTGTCTCAGATGGTAGATCCTCGAGTCCAGTTAATATCAGCTGGAAAACCACAACAGGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGTGTTATGGCCCAGCTGAGAATTCTCATGTTGCTTGCTACAGAATAGCATTGACAAAGTTTCATCCTGTAGATCGAAAAAGATGGTCCAATTTTGAAAGGGAGAACCTAGGCAAGGGAATAAGACAGCAATTCCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGAGATACAAGGATTTTCAGCAGAATCAGATGATCTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTCCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGTTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGATCCCCTAATTAACCGGAATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAAGGATTGAATAACTGGATTGACCTGGCAGTTTCGTTGGGAACAAACAGAACTCCTTTTCAGTGGTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGTGAGTGGACTAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGAGGGAGATTGGCAGGCCGTAGCTTCTACTTTGGAAGGGCGAACTGGTCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGATCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGCCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGCGTGCCGTCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATCAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGTTGCTCTTATCAGCAACTTTGTTGATAGGGAATCAGAGCGGCCTGCTCTTGGTCCTACTGACTTTCGACCTGTACCAAATTCACATTTATTATGTAATACTGATGATCCAGAAACTGCCCCAAAAAGAAATGTGAGGACGAGAAGGATGCCAGTGTCAAGGAATGAAAAGAGTGCTAATGGTGATGCTCCAAAGAAGAGGAAATCAAATAACCAGAGGAATCGAGTTGATGAAACGGCTCAGGTGGATTTTGCAAGTAATACATCTTCTGTCCCAGAGGTTAAATCTACAAAACCTCAAAGAAAACGAACTAGACATGGAGCTTATACCACTAGGAGGAAAGGGGCTCCGAAGATAGGTTGTAATAGTGAGAGATGCGCAGAACAGAATTCGGACACTCGGAACCTTGAGGTGCAGTTAAATTGCAAGGAACCAGCAGAGAGGATCAACAGTGACTGCCCTGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGCTGCAGAGATGCATTCTGAAGGAGTTGTATGCTTTTCAGAACAAGAAGAAAATCAAAACTCTACCGGATCTTCTGGAGTGTCCGTACTGTCAGAAATGACTAATGACATGGACGAATATAACCCTTCTACTCTTCCTGATACAACGTTGCTGGCTAGTATTACTGCGGATGATATTATAGAAACGAAGGGCGTGAACGTTGCAGACAAAGATCTGGATGGCAGTAACAGTTTCTCATTACCACAAAGTTGCTTAGAACTCAGGACAACTGACAGTGAAGGTGTTGACAGCTATTCTGTGGATGAATTCACAGATAAAAGCCATGTGGTTTGCAAGCCCCAAGGCAGAAGGAAGAAAAATAGCAAAAGATCAAATAAGAGCCAGGACTCGTTGGTTTCTTGTCAACAAGCAGAGCTGGAGATGTCTGGGACAAATGAGCTTCATCGTTGTAATCAATTGAAGAAGAGAAAGCATAGCAGTACGAATACGAGTCCATTAGGAACAATGGAAGCCGTTGAAGAGGTTGATGACTGCACTCTCCTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACAACCACACATGGCAAGAAAGTGGATGGCAGTTCAAGCACTTCCCCTGAAGTTGATAATGACGACAATGATCCAACCCTTGCCTTGCTTCTCAAGGAAAAATTGAAGAGAAAAAAGCATTAA 3003 43.42 MSRRSHVDGGDKELPASEEDDEDDLVDDDMETLRRACRLAGVNHEDYVNPQLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEQPLSILPPVTADEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTNVERLTSSERSSMVAFEKGSLPKAALAFIDAIKKNRSQQKFLRSKMIHLEARIEENKKLRKRFKVLKGFQGSCRRKTTCALSQMVDPRVQLISAGKPQQAKDSSKKDKRLSAMCYGPAENSHVACYRIALTKFHPVDRKRWSNFERENLGKGIRQQFQEMVLQISVDQISEIQGFSAESDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRNPWTTSEDKNLLFTIQQKGLNNWIDLAVSLGTNRTPFQWLSRYQRSLNASILKSEWTKDEDDKLRSAVAIFGEGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNQVPLLQEARKIQKVALISNFVDRESERPALGPTDFRPVPNSHLLCNTDDPETAPKRNVRTRRMPVSRNEKSANGDAPKKRKSNNQRNRVDETAQVDFASNTSSVPEVKSTKPQRKRTRHGAYTTRRKGAPKIGCNSERCAEQNSDTRNLEVQLNCKEPAERINSDCPETVDENGMEVFENKAAEMHSEGVVCFSEQEENQNSTGSSGVSVLSEMTNDMDEYNPSTLPDTTLLASITADDIIETKGVNVADKDLDGSNSFSLPQSCLELRTTDSEGVDSYSVDEFTDKSHVVCKPQGRRKKNSKRSNKSQDSLVSCQQAELEMSGTNELHRCNQLKKRKHSSTNTSPLGTMEAVEEVDDCTLLGFLQKRLKRTTTTHGKKVDGSSSTSPEVDNDDNDPTLALLLKEKLKRKKH 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1460648 1471269 - CmaCh10G003210.1 Cma10g00321 301637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00321 1000 SMART sant 540 588 IPR001005 -
Cma10g00321 1000 SMART sant 282 379 IPR001005 -
Cma10g00321 1000 SMART sant 382 432 IPR001005 -
Cma10g00321 1000 SMART sant 435 484 IPR001005 -
Cma10g00321 1000 SMART sant 488 537 IPR001005 -
Cma10g00321 1000 SUPERFAMILY Homeodomain-like 359 426 IPR009057 -
Cma10g00321 1000 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 17 929 - -
Cma10g00321 1000 Pfam Myb-like DNA-binding domain 542 585 IPR001005 -
Cma10g00321 1000 Pfam Myb-like DNA-binding domain 489 535 IPR001005 -
Cma10g00321 1000 Pfam Myb-like DNA-binding domain 436 480 IPR001005 -
Cma10g00321 1000 ProSiteProfiles Myb-like domain profile. 484 535 IPR001005 -
Cma10g00321 1000 SUPERFAMILY Homeodomain-like 415 487 IPR009057 -
Cma10g00321 1000 ProSiteProfiles Myb-like domain profile. 536 586 IPR001005 -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 1 28 - -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 640 675 - -
Cma10g00321 1000 Gene3D - 380 430 - -
Cma10g00321 1000 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 536 590 IPR017930 -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 960 986 - -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 966 981 - -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 614 721 - -
Cma10g00321 1000 CDD SANT 492 533 IPR001005 -
Cma10g00321 1000 Gene3D - 487 540 - -
Cma10g00321 1000 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 488 535 IPR017930 -
Cma10g00321 1000 Gene3D - 543 589 - -
Cma10g00321 1000 ProSiteProfiles Myb-like domain profile. 431 482 IPR001005 -
Cma10g00321 1000 Gene3D - 434 486 - -
Cma10g00321 1000 SUPERFAMILY Homeodomain-like 486 582 IPR009057 -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 676 696 - -
Cma10g00321 1000 ProSiteProfiles Myb-like domain profile. 378 430 IPR001005 -
Cma10g00321 1000 CDD SANT 438 482 IPR001005 -
Cma10g00321 1000 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 431 486 IPR017930 -
Cma10g00321 1000 MobiDBLite consensus disorder prediction 14 28 - -
Cma10g00321 1000 CDD SANT 543 586 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00321 Cma11g00302 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00321 Cma-Chr10:1460648 Cma05g00602 Cma-Chr5:3011623 8.11E-12 dispersed
Cma10g00321 Cma-Chr10:1460648 Cma14g00148 Cma-Chr14:613195 2.43E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35709 PF00249 Myb_DNA-binding 9.70E-09 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00321 K09422 - csv:101216287 1470.68