Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00323 ATGTCTTCACTCCCACGAATCTTTCTTCTCTTCTCTCTTTGTTTCTCTCTTTTTCCTTCTTCCTTCTCTCTCTCCCATCCAGACCCACTAACAATCCGCCCATTTCAGGTGAACCACTCGCCGCCGGCTACTATTCCGGCATTCCCAGAACAGTCCGAAGTTCAGGGCTGCCGCCTGGACCTCCCCGACGACCTCTTCCATGGGATTAAGACAGCTTGCGGTCCCTCAAAAGGGGGTGTCTCCGGGAATCTCCACCGTAGCCGGTGCTGCCCTGTCTTGGCCGCTTGGCTCTACGCTGCTTACTCTGCCACCGCATTGCGGAGGCCCGTTCGAGCCAGCGCCGGTCCAGGTCACACAGCGCCGTCGTATGACCTGCCCCTGCTCCCCGATGACTCCGAAACTTGCGTCAGTAACTTGGATCAGGCTTTGAATCAAAAGGGTATTGAGCTAATGAAGCCTAATGAAACTTGTGATGTGGTTTATTGCTATTGTGGGATCAGATTGCACCCTTTGAGCTGCCCTGAGGCGTTTTCACTGACCCATGATGGGATTCTTGAAGGAGATAGAAATGTGAAGAGATTGGAGAGAAATTGCTTGAGTAGTAGCAATAGCAATGGATTTCCAGGCCTTGGTGGCTGCTCCAAATGCTTGAGTACTCTTTATCAGCTCAACAACAAGGAAGCTTTGAATTCAAGCAAGCCAGAGAACAGGACCATCAAAATGCACCACACGGAGTGTCAGCTGATGGGTCTAACATGGCTGCTTGCCAAGAACCGAACGGCATATATCCGCACCGTTACGTCAGTGCTTCGAGCTAAAATGATGAGCAAAGACGGGTCGGATCCCCGGTCGTGTACTCTCAACAGTGACGGGATGCCTCTGGCTGTCGACTCGGCTGAGATCTCCGGCAGCTCTGTTTCAGTCTCCATTCAGGCACCATTTTCCCAAATTGACTCTCCTTTTCGCCATTTTCAACACCTTCTGTTCTTCTTCTTCTTCTTCATTGCTCTGATCATGGCGACGGCGGAGCTCTGTGAGACTTACGCCTGCGTGCCATCTACCGAGCGAGGCAGAGGAATTTTGATCTCCGGGCACCCCAAAACCAACTCCGTTCTCTACACAAATGGCCGATCCGTCATAATCCTCAATCTCGACAACCCGCTGGAGGTCTCTGTTTATGCTGAGCACGCGTATCCGGCTACGGTTGCTAGGTACTCGCCGAATGGCGAGTGGATCGCGTCCGCTGATGTGTCCGGGACTGTGAGGATTTGGGGCACTCATAGTGGCTTTGTGCTTAAGAAGGAGTTTAAGGTTTTGACTGGGCGGATCGATGATTTGCAATGGTCTCCTGATGGAATGAGGATTGTGGTTTGTGGCGAGGGGAAGGGGAAATCGTTAGTGCGTGCTTTTATGTGGGATTCGGGCACGAACGTCGGCGAGTTTGATGGACATTCTAGGCGGGTTTTAAGCTGTGGATTTAAGCCAACAAGACCCTTTCGCATTGCCACCTGCGGAGAGGATTTCCTAGTGAATTTTTATGAAGGACCGCCATTTAGATTTAAGCTATCTCTCAGGAACCATTCAAATTTTGTCAACTGTGCAAGGTTCTCTCCAGATGGCAGCAAGTTCATTAGTGTAAGCTCTGACAAGAAGGGTATAATATATGATGCGAAGACTGGGGATAAGATGGGAGAACTCTCTCCCGATGATGGGCATAAAGGCAGTATTTATGCTGTCAGCTGGAGTTCGGATGGGAAACAGGTGCTGACTGTCTCTGCCGACAAGACAGCAAAAGTCTGGGTGATATCTGATGATGGTAATGGGAAGTTAGTGAAAACCTTGACTTCTCCTGGCACTGGTGGAATTGATGATATGCTAGTTGGGTGTTTATGGCAGAATCAACATCTTGTCACAGTTTCTCTTGGTGGAACTATTAGCTTGTTTTCAGCTAACGATCTTGAGAAAACCCCTGTCATCTTATCAGGACATATGAAGAATGTTACTTCATTAGTTGTTCTTAAAAGTGACCCTAAAGTTATATTATCTACTAGCTACGATGGGCTGATTATTAAATGGATCCAAGGAATTGGATTCAGTGGCAAGTTGCAAAGAAGAGAAAATTCTCAAATCAAATGTTTTGCAGCTCTTGAAGATGAACTTGTTACATCTGGTTTCGACAACAAGGTATGGAGAGTTTCTATCAAGAATGGTGAGTGTGGGGAAGCAGAAGCTATTGATGTTGGAAGTCAACCAAAGGACTTAACGCTTGCTGCTCTTTCTCCTGAACTTGCCTTGGTTTCAATTGATTCTGGAGTTGTCTTACTGCGTGGCTCAAAAGTAGTGTCAACCGTCAACCTTGGCTTTACCGTGACAGCATCTGTACTTGCGCCTGATGGAAGTGAGGCTATTATAGGTGGGGAAGATGGTAAATTACATATTTATTCTGTTGTTGGCGACTCCCTCGCTGAAGAAGCAACCCTTGAGAGACACAGAGGAGCTGTTAGTGTGATACGCTACTCCCCAGATCTTTCAATGTTTGCATCAGGAGATCTCAACCGAGAAGCTATTGTCTGGGATCGTGCATCCCGAGAGGTGAAACTTAAGAATATGTTGTATCACACTGCTCGGATAAATTGCCTCGCTTGGTCTCCTGATAACACCAAGGTTGCGACTGGTTCATTAGATACATGTATCATCATATATGAGATTGACAAGCCAGCATCCAATCGTCTAACAATAAAGGGAGCTCATTTGGGTGGGGTGTACGGTCTGGCCTTCACAGATGACTATAGCGTGGTGAGCTCTGGTGAGGATGCTTGCGTTCGTGTTTGGAAGATGGTTCCTCAGTGA 2850 47.89 MSSLPRIFLLFSLCFSLFPSSFSLSHPDPLTIRPFQVNHSPPATIPAFPEQSEVQGCRLDLPDDLFHGIKTACGPSKGGVSGNLHRSRCCPVLAAWLYAAYSATALRRPVRASAGPGHTAPSYDLPLLPDDSETCVSNLDQALNQKGIELMKPNETCDVVYCYCGIRLHPLSCPEAFSLTHDGILEGDRNVKRLERNCLSSSNSNGFPGLGGCSKCLSTLYQLNNKEALNSSKPENRTIKMHHTECQLMGLTWLLAKNRTAYIRTVTSVLRAKMMSKDGSDPRSCTLNSDGMPLAVDSAEISGSSVSVSIQAPFSQIDSPFRHFQHLLFFFFFFIALIMATAELCETYACVPSTERGRGILISGHPKTNSVLYTNGRSVIILNLDNPLEVSVYAEHAYPATVARYSPNGEWIASADVSGTVRIWGTHSGFVLKKEFKVLTGRIDDLQWSPDGMRIVVCGEGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCGFKPTRPFRIATCGEDFLVNFYEGPPFRFKLSLRNHSNFVNCARFSPDGSKFISVSSDKKGIIYDAKTGDKMGELSPDDGHKGSIYAVSWSSDGKQVLTVSADKTAKVWVISDDGNGKLVKTLTSPGTGGIDDMLVGCLWQNQHLVTVSLGGTISLFSANDLEKTPVILSGHMKNVTSLVVLKSDPKVILSTSYDGLIIKWIQGIGFSGKLQRRENSQIKCFAALEDELVTSGFDNKVWRVSIKNGECGEAEAIDVGSQPKDLTLAALSPELALVSIDSGVVLLRGSKVVSTVNLGFTVTASVLAPDGSEAIIGGEDGKLHIYSVVGDSLAEEATLERHRGAVSVIRYSPDLSMFASGDLNREAIVWDRASREVKLKNMLYHTARINCLAWSPDNTKVATGSLDTCIIIYEIDKPASNRLTIKGAHLGGVYGLAFTDDYSVVSSGEDACVRVWKMVPQ 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1480125 1488890 - CmaCh10G003230.1 Cma10g00323 301639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00323 949 SMART WD40_4 559 601 IPR001680 GO:0005515
Cma10g00323 949 SMART WD40_4 517 556 IPR001680 GO:0005515
Cma10g00323 949 SMART WD40_4 906 945 IPR001680 GO:0005515
Cma10g00323 949 SMART WD40_4 386 425 IPR001680 GO:0005515
Cma10g00323 949 SMART WD40_4 607 649 IPR001680 GO:0005515
Cma10g00323 949 SMART WD40_4 653 693 IPR001680 GO:0005515
Cma10g00323 949 SMART WD40_4 474 514 IPR001680 GO:0005515
Cma10g00323 949 SMART WD40_4 864 902 IPR001680 GO:0005515
Cma10g00323 949 SMART WD40_4 820 859 IPR001680 GO:0005515
Cma10g00323 949 SMART WD40_4 429 473 IPR001680 GO:0005515
Cma10g00323 949 SMART WD40_4 777 815 IPR001680 GO:0005515
Cma10g00323 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 434 IPR001680 GO:0005515
Cma10g00323 949 SUPERFAMILY WD40 repeat-like 707 946 IPR036322 GO:0005515
Cma10g00323 949 CDD WD40 389 692 - -
Cma10g00323 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 569 600 - -
Cma10g00323 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 827 859 IPR001680 GO:0005515
Cma10g00323 949 Gene3D - 347 945 IPR015943 GO:0005515
Cma10g00323 949 PANTHER ACTIN-INTERACTING PROTEIN 1-1 342 949 - -
Cma10g00323 949 Gene3D - 351 677 IPR015943 GO:0005515
Cma10g00323 949 SUPERFAMILY WD40 repeat-like 374 692 IPR036322 GO:0005515
Cma10g00323 949 Pfam SPARK 55 234 IPR043891 -
Cma10g00323 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 569 600 IPR001680 GO:0005515
Cma10g00323 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 914 949 IPR001680 GO:0005515
Cma10g00323 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 914 949 - -
Cma10g00323 949 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 342 949 - -
Cma10g00323 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 870 911 IPR001680 GO:0005515
Cma10g00323 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 827 859 - -
Cma10g00323 949 Pfam WD domain, G-beta repeat 523 551 IPR001680 GO:0005515
Cma10g00323 949 Pfam WD domain, G-beta repeat 873 901 IPR001680 GO:0005515
Cma10g00323 949 Pfam WD domain, G-beta repeat 570 600 IPR001680 GO:0005515
Cma10g00323 949 Pfam WD domain, G-beta repeat 915 945 IPR001680 GO:0005515
Cma10g00323 949 Pfam WD domain, G-beta repeat 403 424 IPR001680 GO:0005515
Cma10g00323 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 524 565 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00323 K24736 WDR1, AIP1; WD repeat-containing protein 1 (actin-interacting protein 1) - csv:101218837 1169.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00323 Cma11g00303 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00323 Cma-Chr10:1480125 Cma11g01852 Cma-Chr11:12336443 1.40E-66 dispersed
Cma10g00323 Cma-Chr10:1480125 Cma11g00303 Cma-Chr11:1497323 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g232 . Blo16g00117 . . . Bpe13g00373 Bma06g00062 . . . Cma10g00323 Cma11g00303 Car10g00303 Car11g00277 Sed08g0392 . Cpe04g01380 Bhi02g00125 Tan09g1839 Cmetu02g0822 . Hepe09g0377 . . Cla06g01431 Cam06g1585 Cec06g1645 Cco06g1637 Clacu06g1546 Cmu06g1501 Cre06g2310 Cone2ag0753 . . . . . . . . . Bda11g01783 . . . . . . Cmo10g00346 Cmo11g00306 . . . . . . . . . . . . . . . . . . . . Lsi06g01298 Csa01g00422 Chy02g02322 Cme02g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006924 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00323 Cma_Chr10 FPKM 32.757057 34.512722 22.057295 23.904913 21.142363 19.966995 21.827948 21.78047 20.275276 22.776379