Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00324 ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGCACTTCGTCTTCTTCTTCTTCTTCTGATCCTACTTCTGATTCTAATCTCAATTATCCTTATCATGATGAGCTCGATCATGTTGTTAATGGTGACCAATTGGTGAGTAGCGATTTGCGCGCCCAATCGACTATTGCTACCAAACGGAAACAAACTCAACTTGGAGGAGAAGGGATTCTTGAGCAATTACCTGAGGAGGAGCACGACGACGACGACCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAGCGGACCAATCACTTCAGAGCTCCGCTTCCTCCTCCTCCTCCTCCTCCTGCTTTAATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAGTTTTTCACAGAGTATGGAGAGGCCAGCAGATATCAGGTTCAAGAAATAATCGGTAAAGGAAGCTATGGGGTAGTCGGTTCTGCCATCGATACACATACTGATGAGAAGGTCGCAATTAAGAAAATTAATGATGTTTTCGAGCACGTTTCTGATGCCACAAGAATTTTAAGAGAAATTAAACTCCTGCGATTGCTCCGTCATCCTGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGATCTTCACCAAGTAATTAAGGCCAACGATGATCTCTCTCCTGAGCACCATCAATTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATACATACAGCAAATGTGTTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCTGACTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTATCGTTTAATGATGCTCCATCTGCTATTTTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCTCCTGAACTTTGTGGTTCTTTTTTCTCGAAATACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGGAAGCCACTGTTTCCTGGGAAAAATGTGGTGCACCAACTGGATCTGATGGTTGATGTGCTTGGCACGCCTTCTGCCGAGTCCATTGCTAAGATTCGAAATGAAAAGGCAAGAAGATACATTAGTAATATGAGGAGAAAGCAGCCTGTTCCTCTCACACAAAAGTTCCCCAATGCCGATCCCTTGGCTCTTCGCTTGCTTAAACGTCTCCTTGCATTTGATCCCAAAGACCGTCCCACAGCTGAAGAGGCATTAGCTGATCCTTATTTTCATGGTTTGGCCAACGTGGATCGCGAACCATCAACACAACCAATTTCAAAACTCGAGTTTGAATTTGAGAGAAGAAAGTTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAAATGCTACAGGAATATCTCCGCAGTGGAGAGCAAACTAGTTTCATGTACCCAAGCGGTGTTGATCGCTTCAAACGCCAGTTTGCACATCTAGAGGAACACTATGGAAAGGGCGAAAGAAGTACTCCACTTCAAAGAAAGCATGCTTCATTGCCCAGAGAAAGGGTTTGTGCACCAAAAGACAAGGTCGAACAACACAATGATTTAGAAGGAAGAAATGGTGCACATGTTGCTACATCTCTTCAGAGTCCCCCAAGGTCGACAGGGGATGGTTCAGAAAATGCAAACGGTTACGAACAAAATGAACCAAACAAGGCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGTTGTTAAACCAAGAAACGACCTAGAGGAGGAACCGATTACGGAGACGAACGACGAGGCAGTTGATGGATTGTCTCAAAAGGGCCAATTTCAGGTTGTTACCTCCTTCACGCAAATGACTGGCGGCGATCAAGACCACGAGCCTGAAAAATGTGGCAACGCCACCAATCACCAACAAAGACCTGCCTCCTTTGATCCTTCGTCTCTTGTTTCTCCCAAGGCTGTGCCGCCCATTTCGGCGGCGCCGGAGACCGATCATGCTCTCCGCCGCCCGCGGGGGCGCCCTGCCGGGTCCAAAAATAAGCCTAAACCCCCAATTATTGTTACTCGAGATAGCGCCAATGCACTTCGAGCTCATGCGATTGAGGTTAGTTCTGGGTGCGATGTCAATGAGAGCCTCTCGAACTTCGCTCGAAGGAAGCAGCGTGGCGTCTGCATTCTTAGTGGGACGCCGTCGGGGATCACTGGACTGACGATTTACTTGGCCGGCGCACAAGGGCAGGTGGTCGGTGGAGTTGTGGTGGGTGCGCTCATTGCTTCCGGTCCAGTCGTGATCATGGCGGCGACGTTCATGAACGCAACGTTCGACCGCCTGCCGTCGGACGACGAAGAAGTGGCAAGCGCTATACAGAGCCAACACTACGGCCAAAATGGACGGAGCCACCATCATGTGGATGTGTCGGATCTGTATGGTGTGCCGCAGAATTTGATCACCAACAGCGCACTTCCGCCGGAATTGTACTCTTGGGCAGCGGCGGGCAGAACCATGTCAAAGACTTGA 2589 46.93 MGSGTLVDGVRRWFQRRTSSSSSSSDPTSDSNLNYPYHDELDHVVNGDQLVSSDLRAQSTIATKRKQTQLGGEGILEQLPEEEHDDDDLDYSALKLIKVPKRTNHFRAPLPPPPPPPALMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLSPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMVDVLGTPSAESIAKIRNEKARRYISNMRRKQPVPLTQKFPNADPLALRLLKRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRKHASLPRERVCAPKDKVEQHNDLEGRNGAHVATSLQSPPRSTGDGSENANGYEQNEPNKANYSARSLLKSASISASKCIVVKPRNDLEEEPITETNDEAVDGLSQKGQFQVVTSFTQMTGGDQDHEPEKCGNATNHQQRPASFDPSSLVSPKAVPPISAAPETDHALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGTPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVASAIQSQHYGQNGRSHHHVDVSDLYGVPQNLITNSALPPELYSWAAAGRTMSKT 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1489796 1496172 - CmaCh10G003240.1 Cma10g00324 301640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00324 862 MobiDBLite consensus disorder prediction 512 549 - -
Cma10g00324 862 Gene3D Transferase(Phosphotransferase) domain 1 228 456 - -
Cma10g00324 862 SUPERFAMILY AF0104/ALDC/Ptd012-like 716 809 - -
Cma10g00324 862 ProSiteProfiles Protein kinase domain profile. 142 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00324 862 MobiDBLite consensus disorder prediction 14 35 - -
Cma10g00324 862 SMART serkin_6 142 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00324 862 MobiDBLite consensus disorder prediction 512 582 - -
Cma10g00324 862 Pfam Protein kinase domain 142 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00324 862 SUPERFAMILY Protein kinase-like (PK-like) 138 438 IPR011009 -
Cma10g00324 862 Gene3D Phosphorylase Kinase; domain 1 158 479 - -
Cma10g00324 862 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 102 557 - -
Cma10g00324 862 MobiDBLite consensus disorder prediction 1 38 - -
Cma10g00324 862 CDD STKc_TDY_MAPK 141 478 - -
Cma10g00324 862 ProSitePatterns MAP kinase signature. 177 280 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma10g00324 862 MobiDBLite consensus disorder prediction 643 709 - -
Cma10g00324 862 ProSitePatterns Protein kinases ATP-binding region signature. 148 172 IPR017441 GO:0005524
Cma10g00324 862 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 102 557 - -
Cma10g00324 862 MobiDBLite consensus disorder prediction 554 582 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00324 Cma13g00998 CCT
Cma10g00324 Cma13g00998 ECH
Cma10g00324 Cma11g00304 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00324 Cma-Chr10:1489796 Cma17g00278 Cma-Chr17:1464912 0 dispersed
Cma10g00324 Cma-Chr10:1489796 Cma11g00304 Cma-Chr11:1510304 0 wgd
Cma10g00324 Cma-Chr10:1489796 Cma13g00998 Cma-Chr13:7716467 0 wgd
Cma10g00324 Cma-Chr10:1489796 Cma18g00063 Cma-Chr18:268209 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68829 PF00069 Pkinase 1.60E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00324 - - cpep:111793155 1077.0