Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00324 | ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGCACTTCGTCTTCTTCTTCTTCTTCTGATCCTACTTCTGATTCTAATCTCAATTATCCTTATCATGATGAGCTCGATCATGTTGTTAATGGTGACCAATTGGTGAGTAGCGATTTGCGCGCCCAATCGACTATTGCTACCAAACGGAAACAAACTCAACTTGGAGGAGAAGGGATTCTTGAGCAATTACCTGAGGAGGAGCACGACGACGACGACCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAGCGGACCAATCACTTCAGAGCTCCGCTTCCTCCTCCTCCTCCTCCTCCTGCTTTAATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAGTTTTTCACAGAGTATGGAGAGGCCAGCAGATATCAGGTTCAAGAAATAATCGGTAAAGGAAGCTATGGGGTAGTCGGTTCTGCCATCGATACACATACTGATGAGAAGGTCGCAATTAAGAAAATTAATGATGTTTTCGAGCACGTTTCTGATGCCACAAGAATTTTAAGAGAAATTAAACTCCTGCGATTGCTCCGTCATCCTGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGATCTTCACCAAGTAATTAAGGCCAACGATGATCTCTCTCCTGAGCACCATCAATTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATACATACAGCAAATGTGTTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCTGACTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTATCGTTTAATGATGCTCCATCTGCTATTTTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCTCCTGAACTTTGTGGTTCTTTTTTCTCGAAATACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGGAAGCCACTGTTTCCTGGGAAAAATGTGGTGCACCAACTGGATCTGATGGTTGATGTGCTTGGCACGCCTTCTGCCGAGTCCATTGCTAAGATTCGAAATGAAAAGGCAAGAAGATACATTAGTAATATGAGGAGAAAGCAGCCTGTTCCTCTCACACAAAAGTTCCCCAATGCCGATCCCTTGGCTCTTCGCTTGCTTAAACGTCTCCTTGCATTTGATCCCAAAGACCGTCCCACAGCTGAAGAGGCATTAGCTGATCCTTATTTTCATGGTTTGGCCAACGTGGATCGCGAACCATCAACACAACCAATTTCAAAACTCGAGTTTGAATTTGAGAGAAGAAAGTTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAAATGCTACAGGAATATCTCCGCAGTGGAGAGCAAACTAGTTTCATGTACCCAAGCGGTGTTGATCGCTTCAAACGCCAGTTTGCACATCTAGAGGAACACTATGGAAAGGGCGAAAGAAGTACTCCACTTCAAAGAAAGCATGCTTCATTGCCCAGAGAAAGGGTTTGTGCACCAAAAGACAAGGTCGAACAACACAATGATTTAGAAGGAAGAAATGGTGCACATGTTGCTACATCTCTTCAGAGTCCCCCAAGGTCGACAGGGGATGGTTCAGAAAATGCAAACGGTTACGAACAAAATGAACCAAACAAGGCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGTTGTTAAACCAAGAAACGACCTAGAGGAGGAACCGATTACGGAGACGAACGACGAGGCAGTTGATGGATTGTCTCAAAAGGGCCAATTTCAGGTTGTTACCTCCTTCACGCAAATGACTGGCGGCGATCAAGACCACGAGCCTGAAAAATGTGGCAACGCCACCAATCACCAACAAAGACCTGCCTCCTTTGATCCTTCGTCTCTTGTTTCTCCCAAGGCTGTGCCGCCCATTTCGGCGGCGCCGGAGACCGATCATGCTCTCCGCCGCCCGCGGGGGCGCCCTGCCGGGTCCAAAAATAAGCCTAAACCCCCAATTATTGTTACTCGAGATAGCGCCAATGCACTTCGAGCTCATGCGATTGAGGTTAGTTCTGGGTGCGATGTCAATGAGAGCCTCTCGAACTTCGCTCGAAGGAAGCAGCGTGGCGTCTGCATTCTTAGTGGGACGCCGTCGGGGATCACTGGACTGACGATTTACTTGGCCGGCGCACAAGGGCAGGTGGTCGGTGGAGTTGTGGTGGGTGCGCTCATTGCTTCCGGTCCAGTCGTGATCATGGCGGCGACGTTCATGAACGCAACGTTCGACCGCCTGCCGTCGGACGACGAAGAAGTGGCAAGCGCTATACAGAGCCAACACTACGGCCAAAATGGACGGAGCCACCATCATGTGGATGTGTCGGATCTGTATGGTGTGCCGCAGAATTTGATCACCAACAGCGCACTTCCGCCGGAATTGTACTCTTGGGCAGCGGCGGGCAGAACCATGTCAAAGACTTGA | 2589 | 46.93 | MGSGTLVDGVRRWFQRRTSSSSSSSDPTSDSNLNYPYHDELDHVVNGDQLVSSDLRAQSTIATKRKQTQLGGEGILEQLPEEEHDDDDLDYSALKLIKVPKRTNHFRAPLPPPPPPPALMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLSPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMVDVLGTPSAESIAKIRNEKARRYISNMRRKQPVPLTQKFPNADPLALRLLKRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRKHASLPRERVCAPKDKVEQHNDLEGRNGAHVATSLQSPPRSTGDGSENANGYEQNEPNKANYSARSLLKSASISASKCIVVKPRNDLEEEPITETNDEAVDGLSQKGQFQVVTSFTQMTGGDQDHEPEKCGNATNHQQRPASFDPSSLVSPKAVPPISAAPETDHALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGTPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVASAIQSQHYGQNGRSHHHVDVSDLYGVPQNLITNSALPPELYSWAAAGRTMSKT | 862 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1489796 | 1496172 | - | CmaCh10G003240.1 | Cma10g00324 | 301640 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00324 | 862 | MobiDBLite | consensus disorder prediction | 512 | 549 | - | - | |
Cma10g00324 | 862 | Gene3D | Transferase(Phosphotransferase) domain 1 | 228 | 456 | - | - | |
Cma10g00324 | 862 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 716 | 809 | - | - | |
Cma10g00324 | 862 | ProSiteProfiles | Protein kinase domain profile. | 142 | 433 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma10g00324 | 862 | MobiDBLite | consensus disorder prediction | 14 | 35 | - | - | |
Cma10g00324 | 862 | SMART | serkin_6 | 142 | 433 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma10g00324 | 862 | MobiDBLite | consensus disorder prediction | 512 | 582 | - | - | |
Cma10g00324 | 862 | Pfam | Protein kinase domain | 142 | 433 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma10g00324 | 862 | SUPERFAMILY | Protein kinase-like (PK-like) | 138 | 438 | IPR011009 | - | |
Cma10g00324 | 862 | Gene3D | Phosphorylase Kinase; domain 1 | 158 | 479 | - | - | |
Cma10g00324 | 862 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 102 | 557 | - | - | |
Cma10g00324 | 862 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Cma10g00324 | 862 | CDD | STKc_TDY_MAPK | 141 | 478 | - | - | |
Cma10g00324 | 862 | ProSitePatterns | MAP kinase signature. | 177 | 280 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Cma10g00324 | 862 | MobiDBLite | consensus disorder prediction | 643 | 709 | - | - | |
Cma10g00324 | 862 | ProSitePatterns | Protein kinases ATP-binding region signature. | 148 | 172 | IPR017441 | GO:0005524 | |
Cma10g00324 | 862 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE 9 | 102 | 557 | - | - | |
Cma10g00324 | 862 | MobiDBLite | consensus disorder prediction | 554 | 582 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00324 | Cma13g00998 | CCT | |
Cma10g00324 | Cma13g00998 | ECH | |
Cma10g00324 | Cma11g00304 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00324 | Cma-Chr10:1489796 | Cma17g00278 | Cma-Chr17:1464912 | 0 | dispersed | |
Cma10g00324 | Cma-Chr10:1489796 | Cma11g00304 | Cma-Chr11:1510304 | 0 | wgd | |
Cma10g00324 | Cma-Chr10:1489796 | Cma13g00998 | Cma-Chr13:7716467 | 0 | wgd | |
Cma10g00324 | Cma-Chr10:1489796 | Cma18g00063 | Cma-Chr18:268209 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68829 | PF00069 | Pkinase | 1.60E-68 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00324 | - | - | cpep:111793155 | 1077.0 |