Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00325 ATGGCTAATTGGATCTCCTCCAAGCTTAAAGCGGCCGAGAGCATTCTCCAGCAGATCGATCAGCAAGCGGCGGAGTCCCTTAAAAAGGGCGAAAGGCCTCCAGCCGTGGATAATTTGGAAGCCATTGGAAAAACGGGAGATATTTTACCTTTGAAGGATCAGCTGAAGAAGAAGAAGAACCAAGTAGATAACGATTATCATGGCAAATTGCGCAGTGATCTAAGTCTAAATGTAAGCAGAAACCAGGATAATGTAATTTCTGCCGCACCAAAACCCTCACCGACGTCAAAACCATCTACACTAACGGACAGTGACTGGACCGAACTGCTCGGTATACCTAATCAACCTTCAACTTCGACTGCATCCCGCAGTAATGGATCACCTACAGTTCGTGGTGCAAAGAGAGACGTTCGCAGACCAAGTAATGCAGGTTCTAATATGTCGGTGCTGGATTTCAAGAAAACTCAGAACAACACTAAGAGCAATAGGTCCGTTGGGGAAAGAAAGAAATTAACCAGGAAGACAAGTGATGTGGAAGAATCTAATATTTCAGTTTCATTGGGGTCAAATTCAAGAGTTGATCTAAAAAATGACAAAAACATTATGCATTCTGAAGGTCGAGAATTGGACAAGAAAGATGCTGGAGGCAATATTGTAGTTGAAGCGAAAAGTGTGGAAAAAAATGAAATTGGTGGGAATTTTGATTCCAAGGGTTTTTCTTCAGAGGATTCTGCGCTGACAATAAGAAATAGTCAATCCTCAGAAACAGTGCCTGATACGGATCAAGCTAAGAGGATATCTGATATGAATACCATTGTGACAAATGCTCAAAGTCATCAAGAAAGTGGTTTTACTGGGAAGCATAAATCAGATGAAGTTTCTCGTAGTTCTATATCTGATGGTGTAAGAAAAGAGTGGACGGGCTCTTCAACTAGTGGTGGAAGTTCTGGTTTAGATTCGGACTCAGATTCAGCTTCCGATGCTGAAATTGAACGTGAGAGGGAAGAAATAAAAAGGAGGAGGCAGAAAATTCTGGCTGAGAAAGCTGCAGCCAAGGCCATGGAGGCTATCAAAGAACATGAAGACTTGGTTGCTAGACTGGAAGGTGAGAAGCAGAGCCTAGAAAAAATACTGGAAGATCGAGCAAGAAAGCAAGCAGAAGAGGCTTCAGAGCTGCAGACGTCTATGATGGAAATGATGGAGGCAGTTGAGCTTGAGAAGCAGAAGCACAATGAAACCCGCAGAGAAGCCCTTGCAAAAATGGTCAAGCTTGAGACTGAAAATGCCGATCTTGCAAAAACCCTTGCTTCTGTACAATGGAATCTTGAGTTAGAGATGACTTGTTCTGCAATTTCATGTTTAATAGCCATGTCTACCTTCTTGTTTGTACTTTATAGCATTTCTGGTAATCGGGTTGCAGGACTTCGACAGCAGATTGAATTGAAAGAAACGTGTCATGAAGAACTGAGGAGAAGGATCGCAAGCTCTCAGGAAGCTGGAACATCAACAAAGCCATTGGCTTTTAAAGGAATTGAATTTGAATTGGAGATTCTTGAGGCAGAGCACTCTCTCATCACTGATAAAGTCCTTCAATTGCAGGAGAAGGGGAAAAAGTTGGAAGAAAGCATCGAGTTGGTGAGAAAAGAGATGGAGGAACCAACTGAAGTTGAAGTTGAACTCAAGAGAAGGCTTGGCCAGATGACTGACCATCTAATTCAGAAGCAAGTTCAGGTGGAGGCACTGTCTTCAGAGAAAGCCACTCTTCTCTTCAGAATTGAGGCCGTGACGAGGCAATTAGAAGAAAGCAAGTCAATGGTGAATACGAACAACATTTCGAGCACCTCTTGGAGGGACTTGGAGTCTGGAAAATGGAAACTTTCAGGTTCAAAACTGAAACCAATGTTAGAGGACAAGATCCACTCCGGCAAGAAACACCTAGGATCCTTGATCCAGCAGCTGGATGCAATATACGCAGCAGGCATGGTGTTTATAAGGAGAAATCCTGCAGCTAAATTGTGA 2019 42.99 MANWISSKLKAAESILQQIDQQAAESLKKGERPPAVDNLEAIGKTGDILPLKDQLKKKKNQVDNDYHGKLRSDLSLNVSRNQDNVISAAPKPSPTSKPSTLTDSDWTELLGIPNQPSTSTASRSNGSPTVRGAKRDVRRPSNAGSNMSVLDFKKTQNNTKSNRSVGERKKLTRKTSDVEESNISVSLGSNSRVDLKNDKNIMHSEGRELDKKDAGGNIVVEAKSVEKNEIGGNFDSKGFSSEDSALTIRNSQSSETVPDTDQAKRISDMNTIVTNAQSHQESGFTGKHKSDEVSRSSISDGVRKEWTGSSTSGGSSGLDSDSDSASDAEIEREREEIKRRRQKILAEKAAAKAMEAIKEHEDLVARLEGEKQSLEKILEDRARKQAEEASELQTSMMEMMEAVELEKQKHNETRREALAKMVKLETENADLAKTLASVQWNLELEMTCSAISCLIAMSTFLFVLYSISGNRVAGLRQQIELKETCHEELRRRIASSQEAGTSTKPLAFKGIEFELEILEAEHSLITDKVLQLQEKGKKLEESIELVRKEMEEPTEVEVELKRRLGQMTDHLIQKQVQVEALSSEKATLLFRIEAVTRQLEESKSMVNTNNISSTSWRDLESGKWKLSGSKLKPMLEDKIHSGKKHLGSLIQQLDAIYAAGMVFIRRNPAAKL 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1496311 1503870 - CmaCh10G003250.1 Cma10g00325 301641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00325 672 Pfam Golgin subfamily A member 5 487 672 IPR019177 GO:0007030
Cma10g00325 672 Coils Coil 396 434 - -
Cma10g00325 672 Coils Coil 9 29 - -
Cma10g00325 672 MobiDBLite consensus disorder prediction 85 183 - -
Cma10g00325 672 MobiDBLite consensus disorder prediction 277 337 - -
Cma10g00325 672 MobiDBLite consensus disorder prediction 300 323 - -
Cma10g00325 672 PANTHER GOLGIN SUBFAMILY A MEMBER 5 1 672 - -
Cma10g00325 672 Coils Coil 515 549 - -
Cma10g00325 672 Coils Coil 327 387 - -
Cma10g00325 672 MobiDBLite consensus disorder prediction 284 299 - -
Cma10g00325 672 MobiDBLite consensus disorder prediction 85 129 - -
Cma10g00325 672 MobiDBLite consensus disorder prediction 163 177 - -
Cma10g00325 672 PANTHER GOLGIN-84 1 672 IPR019177 GO:0007030
Cma10g00325 672 MobiDBLite consensus disorder prediction 59 78 - -
Cma10g00325 672 MobiDBLite consensus disorder prediction 141 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00325 - - - cpep:111793342 959.903
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00325 Cma11g00306 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00325 Cma-Chr10:1496311 Cma11g00306 Cma-Chr11:1520886 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g218 . . . . . . . . . . Cma10g00325 Cma11g00306 Car10g00307 . Sed08g0399 . Cpe04g01375 Bhi02g00130 Tan09g1831 Cmetu05g0278 . . . . Cla06g01426 Cam06g1580 Cec06g1640 Cco06g1632 Clacu06g1541 Cmu06g1496 Cre06g2305 . . . . . . . . . . . . . . . . . Cmo10g00350 Cmo11g00312 . . . . . . . . . . . . . . . . . . . . Lsi06g01293 Csa01g00427 Chy02g02317 Cme02g01690
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005982 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00325 Cma_Chr10 FPKM 4.249771 5.800704 4.804586 5.362041 5.893681 4.698217 6.386366 9.560593 10.163296 9.422511