Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00332 ATGTCTGCTCCAAAGTTCATGTATTTCGGCACTGCAATCTCCCGAACTACATCCAGAGCTCTATCGCCACTCCTCTTCCCTAGAAGACTCCCGCCGAAGCTCATATCTTTCATCAAGTGCAGTTCTTCTACAGGGCTTGATTCCGCCAGCAGTGGCGGCGCTGATGCTTCTCAATCCTACTCCGGCCTCACTCACCACCCCTGGCCTGAATGGGTTTCCTTCGTCGACGGTCTGAGGACCAAGGGTTACTTGGTCGAACCTACTGTAGAAGATGGAAACGGAGATGGGAGCGGCGGTGATGCAACTACGACATCTGTGAATGATTACAACGACATGAATGTGTTGAAGGATGCTTGCCTCAACTTTGCGCGCGAACGCTACGATATTTTCAAGTCATTGTCCACAGATGATATTCAAACCCTTGTGAAGGATGGATGTCCCAATCTCTTCCGGAAAGTTGTTAATTCAGCTAAGAGATTGAGGGCTTACGTGCAACTAGACGAAGGGGACGTTTGTAGTACTTGCAATCTTCGAGGCTCCTGTGGTCGAGCTTATGTTATTTTAAAGGAAACAGAAGCAACTGCAAGAACTGTGGATATAGCACGATTATTGTTGACCTATGCATTGGAGCCAGTTGTTTTGTCTGGAGGGGACAAACCTCCCGGTAGAGAGCATGTTGAAGTCTCTGCGAGAAAATTGCTTTCTGAGCTATTGGAACTGAGTGAAAAACCCATTGATGCATCAGCAGTGAAGGCGGATACGAAATCTACCCGAAGAAAAGAAAAACCATCAAAATTTACAGATGATGCTTTATCTCAAGATGTTGAGATGAAGAGAGGAGATTGGATGTGTACGAAATGCAACTTCTTGAATTTTTCGAGAAACAGAAAATGTTTGAAATGTAACGAAGATGGTCCTAAAAGAGTTCATGCAGATGATATTGAAATGAAAAATGGAGATTGGATCTGTCCAGAGTGCAAGTTTATGAATTTCTCAAGAAACGTTAACTGCTTAAAGTGCAAAACCGAGGGGCCGAAGAAGATTGATGTCGGCGAAATTGAAATGAAGAAGGGAGATTGGGTCTGTCCGAAATGTACATTCATGAACTTTGCCAGTAACAAGAAATGTTTGCGTTGCCGAGAACATCGCCCGAAGAGGGAAATGAATCCAGGAGAATGGGAATGCCCCTCATGTGACTTTTTGAATTATAGACGAAACATGGTCTGCCGGAAGTGTGATGGTGAGCGGCCTAAACGAGGAGCAAGTGACGAGTATGAGGAGCAGCTATGGGAGTCACCCAGGGGAAGATGA 1311 45.31 MSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISFIKCSSSTGLDSASSGGADASQSYSGLTHHPWPEWVSFVDGLRTKGYLVEPTVEDGNGDGSGGDATTTSVNDYNDMNVLKDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGSCGRAYVILKETEATARTVDIARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLELSEKPIDASAVKADTKSTRRKEKPSKFTDDALSQDVEMKRGDWMCTKCNFLNFSRNRKCLKCNEDGPKRVHADDIEMKNGDWICPECKFMNFSRNVNCLKCKTEGPKKIDVGEIEMKKGDWVCPKCTFMNFASNKKCLRCREHRPKREMNPGEWECPSCDFLNYRRNMVCRKCDGERPKRGASDEYEEQLWESPRGR 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1528782 1532115 + CmaCh10G003320.1 Cma10g00332 301648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00332 436 PANTHER ZINC FINGER PROTEIN 43 343 - -
Cma10g00332 436 PANTHER ZINC FINGER PROTEIN 341 431 - -
Cma10g00332 436 ProSiteProfiles Zinc finger RanBP2 type profile. 389 418 IPR001876 -
Cma10g00332 436 SUPERFAMILY Ran binding protein zinc finger-like 352 385 IPR036443 -
Cma10g00332 436 ProSitePatterns Zinc finger RanBP2-type signature. 282 301 IPR001876 -
Cma10g00332 436 SUPERFAMILY Ran binding protein zinc finger-like 386 418 IPR036443 -
Cma10g00332 436 PANTHER ASPARAGINE-RICH PROTEIN 341 431 - -
Cma10g00332 436 PANTHER ASPARAGINE-RICH PROTEIN 43 343 - -
Cma10g00332 436 ProSiteProfiles Zinc finger RanBP2 type profile. 278 307 IPR001876 -
Cma10g00332 436 SMART zf_4 391 415 IPR001876 -
Cma10g00332 436 SMART zf_4 358 382 IPR001876 -
Cma10g00332 436 SMART zf_4 319 343 IPR001876 -
Cma10g00332 436 SMART zf_4 280 304 IPR001876 -
Cma10g00332 436 MobiDBLite consensus disorder prediction 414 436 - -
Cma10g00332 436 ProSitePatterns Zinc finger RanBP2-type signature. 360 379 IPR001876 -
Cma10g00332 436 ProSitePatterns Zinc finger RanBP2-type signature. 393 412 IPR001876 -
Cma10g00332 436 SUPERFAMILY Ran binding protein zinc finger-like 311 345 IPR036443 -
Cma10g00332 436 ProSiteProfiles Zinc finger RanBP2 type profile. 356 385 IPR001876 -
Cma10g00332 436 ProSiteProfiles Zinc finger RanBP2 type profile. 317 346 IPR001876 -
Cma10g00332 436 Pfam Zn-finger in Ran binding protein and others 391 417 IPR001876 -
Cma10g00332 436 Pfam Zn-finger in Ran binding protein and others 279 301 IPR001876 -
Cma10g00332 436 Pfam Zn-finger in Ran binding protein and others 356 383 IPR001876 -
Cma10g00332 436 Pfam Zn-finger in Ran binding protein and others 317 345 IPR001876 -
Cma10g00332 436 Gene3D - 309 347 - -
Cma10g00332 436 Gene3D - 386 419 - -
Cma10g00332 436 Gene3D - 270 308 - -
Cma10g00332 436 Gene3D - 349 385 - -
Cma10g00332 436 SUPERFAMILY Ran binding protein zinc finger-like 274 306 IPR036443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00332 - - - cpep:111779556 818.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00332 Cma11g00317 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01114 Cma-Chr5:8766781 Cma10g00332 Cma-Chr10:1528782 2.62E-54 dispersed
Cma06g00068 Cma-Chr6:376918 Cma10g00332 Cma-Chr10:1528782 1.93E-25 dispersed
Cma10g00332 Cma-Chr10:1528782 Cma15g00977 Cma-Chr15:5496744 1.79E-72 dispersed
Cma10g00332 Cma-Chr10:1528782 Cma11g00317 Cma-Chr11:1577574 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00332 Cma_Chr10 FPKM 6.670025 7.741595 9.583739 10.378655 23.519327 19.380205 24.819994 17.588001 17.211798 18.155018