Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00334 ATGGGGAATTCTGCGTCTTGTGCGCCTTCAATGGCCTCCAATGGTGCCGCGAAGGTCTTATCCTTAGACGGAAAATTGCAGAGCTACACGAAGCGAGTGCAGGCCGCGGAACTAATGATCGAGCATTCCGGCAAATTCCTCTGCGATTCCGCTGATCTCAGCGTCGGCCACCGGATTCAAGGCCTTTTGCCAGACGAAGATCTCGAGTGCCGGCGATTGTACTTTCTACTTCCGATGGATCTCCTCTACTCCGTGCTAACGCTCGAAGAAATGAGATCTCTGACTTACACCGCCACAAAGGCTCTGAAACATGGGAATTCGAGTGGATTTGGAAGGATCTTCCCTGTTTTGATCACTGATCTCTGTATTTCTCTGTCGGATGTGAATCGATTGAAATCGGCGGACGGCGATCGAGAGAATCGAAGTTCGAAACCTGTGCAGAGATTGATGTCGAAACAGAGATCGTGGAAGCCCGCGCTCGAAACCATTGCTGAAACTTCGGCCCAATTTGTTCTCGTTCTCGCAGATCAACGTGCTGATTTCTGGTATCTCAATTTTCAACTGCTTGGAGATTCACAGTCTTCAGCTGAGAGCAGCTCAACTCTCTCATCAATGGTGTTCGTTGGGTTTATTGGTTTGGATGATCTGAGCTTCGAATTAGCTACTTCACTAATCCGTGGCGGTTACAGAGTCAAAGCTTATGAGATAAATCAGGCCTTGACAGATAAATTCTCGAAGTTAGGGGGAATAAGCTGTGCCAGTACTATAGAGGCAGGGGAAGATGTTGCAGCATTGCTTGTATTGAACAGTCATTTCAATCTGATAAATGATTTATCTTTTTCTGATGCTATCCCAGGGTTGCATAAGGATGTTGTTGTTGTTCTTGTCCGTTCAACTATACTGGAGAAGGATGTCCACAACTCGAAAAAGCTTTTTACAGTTAATTTTGAGATACCTAATCTTGTTGAAGCATATGTCTTTAAGGGTGTTTCTGAAGCTCTGGACGGTCAACTCATGATGATAACTTCGGGTAGGGCAGCTGCACTTTCTAGAGCTCGACCCTTTCTATCAGCTATGTGTGGAAAGCTTTTCATTTTTGAAGGTGAAGTTGATGCTGGAAGTAAAACAAATATGGTAATTGAGCTCCTTAAAGGAATTCATTTTGTGGCTTCGCTGGAAGCTATTTCCCTGGGTATTAAAGCCGGAATTCACCCCTGGATAATCTACGACATTATTTCAAATGCTGCTGGGAATTCATGGTTTTTCAAGAATCATGTTCCCAACTTGTTAAAGGGCAATATTAGACCTGAGTTTTTGAGAAATTTGGTTCAAAATTTGGGGATTGTCATGGATAAGGCCAAGTCGCATACTTTTCCTCTTCCGCTCCTGGCAAGTGCTCATCAGCAACTTATGCTTGGTTCTTCTCACGGCGATAGAGATGAAGACGGTTTGTTAGAACAGGTATGGAAAGGTGCATATGGAGTAAATATTTCAGACGCGGCAAATACGGAAATATACAGCCCTGAGCAACTAGCAAATGAAATAATTTCGAAATCAAGCTCTGTTATTCGAGTGGGTTTCATTGGTCTTGGTGCAATGGGATTTGGCATGGCAACTCAACTTATCAGATCAAATTTTTGTGTGATTGGTTATGATGTGTTTAAACCAACCTTGACTAAATTCTCTGATGCCGGTGGTTTGATTGGAATCTCGCCTGCAGAAGCTAGTAAAGATGTTGAAGTGCTTGTTATTATGGTGACAAATGAAGCACAAGTGGAGAGCGTTCTGTATGGAGAAGCTGGGGCTATCTCTGCACTTCCATATGGAGCTTCGATTATTCTGTCATCTACAGTTTCTCCTGGATATGTGAGCCAACTAGAACAACGCTTGGGAAATGAGGGCAAGAATTTTAAATTGGTTGATGCTCCTGTTTCTGGTGGTGTTCAAAGGGCCTCAAACGGAACCCTTACGATAATGGCTTCTGGGACAAATGAAGCACTTAGGAGCGCTGGTTTAGTCCTCTCAGCCTTGAGTGAGAAGCTTTATGTTATTAAAGGAGTTTGCGGGGCAGGAAGCGGCGTGAAAATGGTAAATCAATTGCTTGCTGGAGTTCATATAGCATCGGGTGCAGAGGCAATGGCATTTGGTGCTCGACTTGGTCTCAATACTAGAATTTTATTTGACGTCATCCTAAATAGTCAGGGAACATCCTGGATGTTTGAAAACCGAGTTCCACATATGCTGGATGATGATTATACACCATACTCCGCACTTGACATCTTTGTGAAGGACCTGGGCATTGTTTCTCGGGAATGTGCATCTCATAAAGTTCCTCTGCACTTATCCGTGGCGGCACATCAATTGTTTCTGGCAGGTTCTGCTGCGGGCTGGGGTCGTCAAGATGATGCTGGAGTAGTGAAGGTTTATGAGACGCTTACAGGTGTTAAGGTTAAAGGAAAACCTCCCACTCTTAAGAAAGAAGCTTTGTTGGGATCTCTTCCTCCTGAATGGCCGCAAGATGTAATTGCTGATATTCAACAACTAAATGAAAGAAATTCAAAAATTTTGGTTGTGCTGGATGATGATCCAACGGGAACTCAAACTGTTCATGATATTGATGTTTTAACTGAATGGACCCTTGATTCACTTATTGAACAGTTTCGTAAAAAACCCAAATGCTTTTTTATCTTGACCAACTCAAGGTCACTGAGTTCTGAAAAGGCTGGGGCATTAGTTGAACAAATCTGCATTAACTTACGTGCTGCATCCGAGTGTGTCAAGCATAGCGACTACACTGTAGTTTTGAGAGGTGACTCAACCTTACGAGGTCATTTTCCCGAGGAAGCCGATGCTGCTATTTCAGTCTTAGGTGTAGTGGATGCATGGATCATTTGTCCATTCTTTTTCCAAGGAGGCCGTTATACTGTTGACGATATACACTATGTTGCGGATTCTGATGTGCTTATCCCTGCGGGGGACACTGAGTTTGCAAAAGATGCTACTTTTGGTTATAAATCTTCAAATCTTCGTGAGTGGGTTGAAGAGAAAACAGCTGGACGCATACAAGCTGACACTGTTACGTCTATTTCTATTCAACTTTTAAGAAAGGGTGGCCCAGATACTGTTTGCAAGCACCTATGCAGCTTAGAGAAGGGAATGACATGCATAGTTAATGCCGCTAGTGAAAGGGATATGGCCGTTTTTGCTGCTGGAATGATCAAGGCAGAAATAAAGGGCAAGAGTTTCTTGTGTCGAACTGCTGCCAGTTTCGTATCAGCCAGGATTGGAATAACTCCAATAGCTCCTCTTTTGCCGAAGGATGTTGGAATTGAGAAAGAGAGAATGGGTGGTCTTATAATTGTGGGTTCATATGTTCCAAAAACTACAAAACAGGTTCAAGAGCTGAAGTTGCGATGTAGCCCATTTTTAAGATGTATCGAGGTTTCTGCTGCCAAACTTTCCATGAGTTCAGAGGAAGAGAGGGAGGAGGAAATCAGAAAAGCAGCTATATTTGCAGATATTTATCTCAGGGCTCACAAAGATACTCTAATTATGACTAGTCGAGAACTTATCACGGGAAAAAGTCCCTTGGAGAGTTTAGAAATCAATGTCAAAGTAAGTGCAGCACTAGTGGAAATAGTTCAGCGGATAAATACAAAACCTCGCTACATCCTTGCAAAGGGTGGAATTACCTCATCAGATATTGCTACGAAGGCTCTTGGAACAAAATGTGCTAAGATAATTGGACAAGCCCTTTCTGGAGTTCCCTTGTGGCAACTAGGCCATGAAAGTAGACATCCTGGAGTTCCATACATTGTTTTTCCAGGTAATGTTGGCAACAGTGAAGCACTAGCAGAAGTAGTCAGTTCTTGGGCCCTTCCTGCCAGACTTTCCTCTTCAAAAGAGATTCTTCTTAATGCAGAACGAGGTGGTTATGCAGTGGGAGCGTTCAATGTCTATAATTTGGAAGGAGTTCAGGCTGTTGTTGCTGCTGCTGAAGAACAACAGAGTCCTGCCATATTACAGATCCATCCAGGTGCCTTAAAGCAAGGAGGGCTCTCTTTGGTTTCGTGCTGTATTGCTGCTGCTGAACGAGCCAGTGTACCAATCTCTGTTCACTTTGATCACGGAAATTCGATGGAAGATCTGTTAGAAGCGATTGAATTGGGATTTGATTCAGTAATGGCAGATGGTTCACATCTTCCATTTAAGGAAAATATTGCCTACACAAAGTTCATTTCTTCCTTGGCTCGATCAAAAGACATGCTAGTGGAAGCTGAACTTGGTAGATTATCAGGAACAGAAGATGACTTGACTGTCGAAGATTATGAAGCAAGGCTGACCGATGTATCCCAGGCTCAACAGTTTATTGAGGAGACTGGTATAGATGCTCTAGCAGTGTGTATCGGTAATGTCCATGGCAAATATCCAGCAAGTGGCCCGAATCTCAGACTCAATCTGCTCAAGGATTTGCATGCTCTGAGCTCAAGAAAAGGGGTCTTCCTGGTGCTGCACGGAGCTTCCGGTTTGCCTGAGAACCTCATAAAGGCTTGCATCGAGAACGGAGTGAGAAAGTTCAACGTAAACACCGAGGTTCGGAAGGCATACTTGGATTCACTGAATAGCCCCAGCAAAGATTTAGTCCATGTGATGGAATCAGCCAAAGAATCCATGAAAGCTGTGATTGCAGAGAAGATTCATCTATTTGGTTCTGCAGGAAAAGCATTATGA 4731 43.56 MGNSASCAPSMASNGAAKVLSLDGKLQSYTKRVQAAELMIEHSGKFLCDSADLSVGHRIQGLLPDEDLECRRLYFLLPMDLLYSVLTLEEMRSLTYTATKALKHGNSSGFGRIFPVLITDLCISLSDVNRLKSADGDRENRSSKPVQRLMSKQRSWKPALETIAETSAQFVLVLADQRADFWYLNFQLLGDSQSSAESSSTLSSMVFVGFIGLDDLSFELATSLIRGGYRVKAYEINQALTDKFSKLGGISCASTIEAGEDVAALLVLNSHFNLINDLSFSDAIPGLHKDVVVVLVRSTILEKDVHNSKKLFTVNFEIPNLVEAYVFKGVSEALDGQLMMITSGRAAALSRARPFLSAMCGKLFIFEGEVDAGSKTNMVIELLKGIHFVASLEAISLGIKAGIHPWIIYDIISNAAGNSWFFKNHVPNLLKGNIRPEFLRNLVQNLGIVMDKAKSHTFPLPLLASAHQQLMLGSSHGDRDEDGLLEQVWKGAYGVNISDAANTEIYSPEQLANEIISKSSSVIRVGFIGLGAMGFGMATQLIRSNFCVIGYDVFKPTLTKFSDAGGLIGISPAEASKDVEVLVIMVTNEAQVESVLYGEAGAISALPYGASIILSSTVSPGYVSQLEQRLGNEGKNFKLVDAPVSGGVQRASNGTLTIMASGTNEALRSAGLVLSALSEKLYVIKGVCGAGSGVKMVNQLLAGVHIASGAEAMAFGARLGLNTRILFDVILNSQGTSWMFENRVPHMLDDDYTPYSALDIFVKDLGIVSRECASHKVPLHLSVAAHQLFLAGSAAGWGRQDDAGVVKVYETLTGVKVKGKPPTLKKEALLGSLPPEWPQDVIADIQQLNERNSKILVVLDDDPTGTQTVHDIDVLTEWTLDSLIEQFRKKPKCFFILTNSRSLSSEKAGALVEQICINLRAASECVKHSDYTVVLRGDSTLRGHFPEEADAAISVLGVVDAWIICPFFFQGGRYTVDDIHYVADSDVLIPAGDTEFAKDATFGYKSSNLREWVEEKTAGRIQADTVTSISIQLLRKGGPDTVCKHLCSLEKGMTCIVNAASERDMAVFAAGMIKAEIKGKSFLCRTAASFVSARIGITPIAPLLPKDVGIEKERMGGLIIVGSYVPKTTKQVQELKLRCSPFLRCIEVSAAKLSMSSEEEREEEIRKAAIFADIYLRAHKDTLIMTSRELITGKSPLESLEINVKVSAALVEIVQRINTKPRYILAKGGITSSDIATKALGTKCAKIIGQALSGVPLWQLGHESRHPGVPYIVFPGNVGNSEALAEVVSSWALPARLSSSKEILLNAERGGYAVGAFNVYNLEGVQAVVAAAEEQQSPAILQIHPGALKQGGLSLVSCCIAAAERASVPISVHFDHGNSMEDLLEAIELGFDSVMADGSHLPFKENIAYTKFISSLARSKDMLVEAELGRLSGTEDDLTVEDYEARLTDVSQAQQFIEETGIDALAVCIGNVHGKYPASGPNLRLNLLKDLHALSSRKGVFLVLHGASGLPENLIKACIENGVRKFNVNTEVRKAYLDSLNSPSKDLVHVMESAKESMKAVIAEKIHLFGSAGKAL 1576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1533339 1552948 - CmaCh10G003340.1 Cma10g00334 301650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00334 1576 Gene3D - 372 489 IPR013328 GO:0016491
Cma10g00334 1576 SUPERFAMILY YgbK-like 856 1288 - -
Cma10g00334 1576 Pfam Nucleotide-binding C-terminal domain 1118 1284 IPR031475 -
Cma10g00334 1576 TIGRFAM cbbA: ketose-bisphosphate aldolase 1298 1575 IPR000771 GO:0005975|GO:0008270|GO:0016832
Cma10g00334 1576 Pfam Fructose-bisphosphate aldolase class-II 1300 1574 IPR000771 GO:0005975|GO:0008270|GO:0016832
Cma10g00334 1576 SUPERFAMILY Aldolase 1299 1575 - -
Cma10g00334 1576 Gene3D - 518 685 - -
Cma10g00334 1576 Gene3D - 206 367 - -
Cma10g00334 1576 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 524 682 IPR036291 -
Cma10g00334 1576 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 204 476 - -
Cma10g00334 1576 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 481 1497 - -
Cma10g00334 1576 PANTHER ALDOLASE-RELATED 204 476 - -
Cma10g00334 1576 PANTHER ALDOLASE-RELATED 481 1497 - -
Cma10g00334 1576 Pfam Sugar-binding N-terminal domain 856 1093 IPR010737 -
Cma10g00334 1576 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 208 364 IPR006115 GO:0050661
Cma10g00334 1576 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 524 682 IPR006115 GO:0050661
Cma10g00334 1576 Gene3D - 855 1094 IPR037051 -
Cma10g00334 1576 Gene3D Aldolase class I 1293 1576 IPR013785 -
Cma10g00334 1576 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 372 482 IPR008927 -
Cma10g00334 1576 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 372 482 IPR029154 GO:0051287
Cma10g00334 1576 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 689 809 IPR029154 GO:0051287
Cma10g00334 1576 Pfam PADRE domain 1 165 IPR025322 -
Cma10g00334 1576 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 689 816 IPR008927 -
Cma10g00334 1576 Gene3D - 686 818 IPR013328 GO:0016491
Cma10g00334 1576 CDD TBP_aldolase_IIB 1301 1573 IPR000771 GO:0005975|GO:0008270|GO:0016832
Cma10g00334 1576 Gene3D - 1108 1290 IPR042213 -
Cma10g00334 1576 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 208 367 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00334 - - - bhj:120070914 2420.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00334 Cma11g00319 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00057 Cma-Chr1:234996 Cma10g00334 Cma-Chr10:1533339 3.56E-20 dispersed
Cma10g00334 Cma-Chr10:1533339 Cma13g00486 Cma-Chr13:5225216 6.10E-11 dispersed
Cma15g00954 Cma-Chr15:5122421 Cma10g00334 Cma-Chr10:1533339 9.23E-13 dispersed
Cma20g01151 Cma-Chr20:9106962 Cma10g00334 Cma-Chr10:1533339 1.60E-09 dispersed
Cma10g00334 Cma-Chr10:1533339 Cma11g00319 Cma-Chr11:1583965 6.39E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g178 . . . . . . . . . . Cma10g00334 Cma11g00319 Car10g00317 Car11g00294 Sed08g0412 . . Bhi02g00164 Tan09g1806 Cmetu05g0436 . Hepe09g0401 . . Cla06g01410 Cam06g1563 Cec06g1623 Cco06g1615 Clacu06g1525 Cmu06g1479 Cre06g2288 . . . . . . . . . . . . . . . . . Cmo10g00362 Cmo11g00324 . . . . . . . . . . . . . . . . . . . . Lsi06g01269 Csa01g00446 Chy02g02298 Cme02g01669
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009138 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00334 Cma_Chr10 FPKM 19.681488 19.335554 7.238361 7.196479 6.847926 7.308247 7.200921 11.994555 10.876145 12.355594