Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00345 ATGGAGAGACAGCAAGAACTTACAAGGTTTATGGAGGAAAATAGTGCTGCAGAAGTCATGTTTACACTACGATCTACTCCTGCCCTCTTCTTCCTCCCTCCCTGCGTCCTTCTCCAACCCTTTTGTTACCCTCTTTTCTTTCAATGCCCCATCAAAATTGCATTCTTTCTTCAACCCCATCCCCACCAACACAACCTTCTCCACAATTGCCAAACCACCGTTTTTTATTCCAGGGCGTGCACGCTGCCGCCGCTGCGTGCATTTCCATTAAATTATAGGCTTATGGCCTGCCCATCTCTGCCGCCGGCCACCATCCCCTCCGTCATTCTCATTGTGATCTCATTGGAGCTGATTGTGTGTTGGGGCGCTCACACGGATGCAGAAGCGCTCCTCAAGTTCAAAAGCTCTCTTGAAATAAGCAATGATGCGTTGGGTGATTGGGGCCTGGAGTCCTCCCCTTGCTCCGAGAACAAGGCGAATTGGGTGGGTATTATTTGCCACAAGGGCCATGTTTGGGGATTGAAGCTCGAGAACATGGGGCTGAAGGGCAGCATTGACATGGAGTCCCTCGAAGGGGTCCCCTTTTTAAGGATTATTAGCCTTAAGAACAATCATTTTGAGGGCTCTTTGCCAGATGTCAAGAGAGTTGGGGCATTGAAATCTCTGTTTTTGTCTGGAAACCAATTATCAGGCAACATTCCTGGGGATTCGTTTTCCAACATGATGTCTTTGAAGAAGGTTCATTTGGCACACAACCAGTTTGAGGGTCAGATTCCTTGGTCCTTGGTCGAGTTGCCTCGCTTATTGGAGTTGAGGCTGGAAGGAAACAAGTTTTCTGCCCAAATTCCTAATTTCCAGCAGAAGGCATTCAAGTCCTTTAATATCTCCCATAACGATCAACTTCATGGCCCAATCCCACAAGCCCTCTCCCACATGGATCCATCCTCCTTTTCAGGCATTGAAGGCTTATGTGGACCGCCACTTAATAAACCGTGCAATACCGCAAATATGCCATCAATCGCGAGCATCATCATGGTTTCAATAGCTCTGACACAAGCTTTGCTTGCCATCGGTGCAGGAATAGTAATCCTTAGCCGTCGGAACCAATCATCTTCTTGTGAAGAGGTTCCAGCCAACGTCAAATCTCCAGGTGCTAGAGCGTTAGATCCAGGAGTTGGGGCAAAGTCACCGGACCGTGCCTCCAGTCATGGATCGGGGAGACGGGTGGCCGAGGGTGCTAAGTTATCATTTGTAAGAGAGGACTTGGAGAAGTTTGATTTATCAGACTTGCTTAAAGCCTCTGCACAGATCCTAGGAAGTGGGTGCTTCGGTTCTTCTTACAAGGCAGCCATGACCGGCGGACCTGTGGTAGTTGTAAAGAGGTTTAAGCAAATGAACAATGTGGATAAAGATGAATTCCAAGAACATATGAAGAGAATTGGAAGATTGAAACACCCCAACTTGCTTCCTCTCGTAGCCTACTTCTACAAAAAGGAAGAAAAGCTTCTCATAACAAACTTTGTTGAGAAGGGTAGCTTGGTTATTCAACTTCATGGGCAAAAAGCCGAGGGTCAACCAGCCCTCGATTGGTCTGCAAGGTTGAAGATCATCAAGGGCATTGCAAAGGGTCTTCGCTATCTCTACAGTGAGCTTCCAAGTCTCATAACCCCACACGGCCATCTCAAGTCCTCAAATGTGCTTCTCAATGCCAACTATGAGCCCCTTCTTTCGGACTATGGCCTGATCCCAGTTATCAACCAAGAGCACGCCCAAGATCTAATGGTGGCCTACAGATCCCCGGAGTACAACCAACAAGGTCGCATCACAAAGAAAACAGATGTGTGGAGCTTTGGGCTGTTGATCCTAGAGATTCTAACAGGGAAACTCGTAGCCAACTTTCTGCATCAGGGCAAGGGTGGGGACGAGGAAGATTTGGCAAGTTGGGTCAAATCCATTACTGCGACAGAATGGAATAGCCAAGTATTTGATAAGAACATGGGGCCAACCAAGAGCAGCGAGGGTGAAATGATGAAGCTTCTGAGGATTGCATTAGCATGTTGCGAGAGCGACTTTGAAAAGAGGCTGGATTTGAGAGAGGTTGTGGAGAAGATTGAGGAGTTGAAAGAAAAAGATGGGGATGAAGATTTCTATTCTTCATACGCCAGTGAATCTGATATTAGATCTTCAAGAGGGTTATCTGATGAACTCAATTTTACCATGTGA 2223 47.05 MERQQELTRFMEENSAAEVMFTLRSTPALFFLPPCVLLQPFCYPLFFQCPIKIAFFLQPHPHQHNLLHNCQTTVFYSRACTLPPLRAFPLNYRLMACPSLPPATIPSVILIVISLELIVCWGAHTDAEALLKFKSSLEISNDALGDWGLESSPCSENKANWVGIICHKGHVWGLKLENMGLKGSIDMESLEGVPFLRIISLKNNHFEGSLPDVKRVGALKSLFLSGNQLSGNIPGDSFSNMMSLKKVHLAHNQFEGQIPWSLVELPRLLELRLEGNKFSAQIPNFQQKAFKSFNISHNDQLHGPIPQALSHMDPSSFSGIEGLCGPPLNKPCNTANMPSIASIIMVSIALTQALLAIGAGIVILSRRNQSSSCEEVPANVKSPGARALDPGVGAKSPDRASSHGSGRRVAEGAKLSFVREDLEKFDLSDLLKASAQILGSGCFGSSYKAAMTGGPVVVVKRFKQMNNVDKDEFQEHMKRIGRLKHPNLLPLVAYFYKKEEKLLITNFVEKGSLVIQLHGQKAEGQPALDWSARLKIIKGIAKGLRYLYSELPSLITPHGHLKSSNVLLNANYEPLLSDYGLIPVINQEHAQDLMVAYRSPEYNQQGRITKKTDVWSFGLLILEILTGKLVANFLHQGKGGDEEDLASWVKSITATEWNSQVFDKNMGPTKSSEGEMMKLLRIALACCESDFEKRLDLREVVEKIEELKEKDGDEDFYSSYASESDIRSSRGLSDELNFTM 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1598790 1603363 - CmaCh10G003450.1 Cma10g00345 301661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00345 740 Gene3D Ribonuclease Inhibitor 123 334 IPR032675 -
Cma10g00345 740 Pfam Leucine rich repeat 219 278 IPR001611 GO:0005515
Cma10g00345 740 MobiDBLite consensus disorder prediction 721 740 - -
Cma10g00345 740 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 107 718 - -
Cma10g00345 740 Pfam Leucine rich repeat N-terminal domain 124 166 IPR013210 -
Cma10g00345 740 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 107 718 - -
Cma10g00345 740 ProSiteProfiles Protein kinase domain profile. 432 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00345 740 Gene3D Transferase(Phosphotransferase) domain 1 508 726 - -
Cma10g00345 740 MobiDBLite consensus disorder prediction 375 407 - -
Cma10g00345 740 SUPERFAMILY L domain-like 123 312 - -
Cma10g00345 740 Pfam Protein tyrosine and serine/threonine kinase 436 704 IPR001245 GO:0004672|GO:0006468
Cma10g00345 740 Gene3D Phosphorylase Kinase; domain 1 399 507 - -
Cma10g00345 740 SUPERFAMILY Protein kinase-like (PK-like) 436 706 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00345 Cma-Chr10:1598790 Cma14g01180 Cma-Chr14:9442176 0 dispersed
Cma10g00345 Cma-Chr10:1598790 Cma11g00327 Cma-Chr11:1639465 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68831 PF07714 PK_Tyr_Ser-Thr 7.50E-31 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00345 - - csv:101213261 998.808